data_5OQW # _model_server_result.job_id wxkdK_PSV7GN3OHuv-Qw-Q _model_server_result.datetime_utc '2024-12-08 06:33:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oqw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5OQW # _exptl.entry_id 5OQW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OQW _cell.length_a 99.38 _cell.length_b 99.38 _cell.length_c 106.733 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OQW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PHE 45 A PHE 272 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc2 A O PHE 45 A PHE 272 1_555 D NA NA . A NA 402 8_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc3 A SG CYS 73 A CYS 300 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 A SG CYS 76 A CYS 303 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc5 A NE2 HIS 93 A HIS 320 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc6 A SG CYS 100 A CYS 327 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc7 D NA NA . A NA 402 1_555 H O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc8 D NA NA . A NA 402 1_555 H O HOH . A HOH 579 8_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc9 B SG CYS 73 B CYS 300 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc10 B SG CYS 76 B CYS 303 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc11 B NE2 HIS 93 B HIS 320 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc12 B SG CYS 100 B CYS 327 1_555 F ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OQW _atom_sites.fract_transf_matrix[1][1] 0.010062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 500 ZN ZN . D 3 NA A 1 402 1 NA NA . E 4 A4E A 1 403 1 A4E L01 . F 2 ZN B 1 401 500 ZN ZN . G 4 A4E B 1 402 1 A4E L02 . H 5 HOH A 1 501 159 HOH HOH . H 5 HOH A 2 502 13 HOH HOH . H 5 HOH A 3 503 83 HOH HOH . H 5 HOH A 4 504 148 HOH HOH . H 5 HOH A 5 505 125 HOH HOH . H 5 HOH A 6 506 203 HOH HOH . H 5 HOH A 7 507 223 HOH HOH . H 5 HOH A 8 508 56 HOH HOH . H 5 HOH A 9 509 220 HOH HOH . H 5 HOH A 10 510 17 HOH HOH . H 5 HOH A 11 511 38 HOH HOH . H 5 HOH A 12 512 114 HOH HOH . H 5 HOH A 13 513 205 HOH HOH . H 5 HOH A 14 514 62 HOH HOH . H 5 HOH A 15 515 29 HOH HOH . H 5 HOH A 16 516 131 HOH HOH . H 5 HOH A 17 517 27 HOH HOH . H 5 HOH A 18 518 2 HOH HOH . H 5 HOH A 19 519 7 HOH HOH . H 5 HOH A 20 520 89 HOH HOH . H 5 HOH A 21 521 39 HOH HOH . H 5 HOH A 22 522 135 HOH HOH . H 5 HOH A 23 523 116 HOH HOH . H 5 HOH A 24 524 212 HOH HOH . H 5 HOH A 25 525 76 HOH HOH . H 5 HOH A 26 526 22 HOH HOH . H 5 HOH A 27 527 193 HOH HOH . H 5 HOH A 28 528 144 HOH HOH . H 5 HOH A 29 529 80 HOH HOH . H 5 HOH A 30 530 94 HOH HOH . H 5 HOH A 31 531 216 HOH HOH . H 5 HOH A 32 532 142 HOH HOH . H 5 HOH A 33 533 117 HOH HOH . H 5 HOH A 34 534 92 HOH HOH . H 5 HOH A 35 535 132 HOH HOH . H 5 HOH A 36 536 218 HOH HOH . H 5 HOH A 37 537 15 HOH HOH . H 5 HOH A 38 538 209 HOH HOH . H 5 HOH A 39 539 164 HOH HOH . H 5 HOH A 40 540 43 HOH HOH . H 5 HOH A 41 541 40 HOH HOH . H 5 HOH A 42 542 3 HOH HOH . H 5 HOH A 43 543 95 HOH HOH . H 5 HOH A 44 544 23 HOH HOH . H 5 HOH A 45 545 208 HOH HOH . H 5 HOH A 46 546 120 HOH HOH . H 5 HOH A 47 547 74 HOH HOH . H 5 HOH A 48 548 130 HOH HOH . H 5 HOH A 49 549 55 HOH HOH . H 5 HOH A 50 550 19 HOH HOH . H 5 HOH A 51 551 175 HOH HOH . H 5 HOH A 52 552 136 HOH HOH . H 5 HOH A 53 553 28 HOH HOH . H 5 HOH A 54 554 165 HOH HOH . H 5 HOH A 55 555 107 HOH HOH . H 5 HOH A 56 556 14 HOH HOH . H 5 HOH A 57 557 82 HOH HOH . H 5 HOH A 58 558 26 HOH HOH . H 5 HOH A 59 559 194 HOH HOH . H 5 HOH A 60 560 147 HOH HOH . H 5 HOH A 61 561 97 HOH HOH . H 5 HOH A 62 562 154 HOH HOH . H 5 HOH A 63 563 73 HOH HOH . H 5 HOH A 64 564 204 HOH HOH . H 5 HOH A 65 565 61 HOH HOH . H 5 HOH A 66 566 124 HOH HOH . H 5 HOH A 67 567 8 HOH HOH . H 5 HOH A 68 568 81 HOH HOH . H 5 HOH A 69 569 45 HOH HOH . H 5 HOH A 70 570 182 HOH HOH . H 5 HOH A 71 571 64 HOH HOH . H 5 HOH A 72 572 183 HOH HOH . H 5 HOH A 73 573 35 HOH HOH . H 5 HOH A 74 574 58 HOH HOH . H 5 HOH A 75 575 198 HOH HOH . H 5 HOH A 76 576 34 HOH HOH . H 5 HOH A 77 577 129 HOH HOH . H 5 HOH A 78 578 10 HOH HOH . H 5 HOH A 79 579 184 HOH HOH . H 5 HOH A 80 580 121 HOH HOH . H 5 HOH A 81 581 152 HOH HOH . H 5 HOH A 82 582 79 HOH HOH . H 5 HOH A 83 583 141 HOH HOH . H 5 HOH A 84 584 185 HOH HOH . H 5 HOH A 85 585 162 HOH HOH . H 5 HOH A 86 586 11 HOH HOH . H 5 HOH A 87 587 20 HOH HOH . H 5 HOH A 88 588 70 HOH HOH . H 5 HOH A 89 589 126 HOH HOH . H 5 HOH A 90 590 128 HOH HOH . H 5 HOH A 91 591 197 HOH HOH . H 5 HOH A 92 592 172 HOH HOH . H 5 HOH A 93 593 179 HOH HOH . H 5 HOH A 94 594 153 HOH HOH . H 5 HOH A 95 595 217 HOH HOH . H 5 HOH A 96 596 160 HOH HOH . H 5 HOH A 97 597 166 HOH HOH . H 5 HOH A 98 598 72 HOH HOH . H 5 HOH A 99 599 85 HOH HOH . H 5 HOH A 100 600 156 HOH HOH . H 5 HOH A 101 601 196 HOH HOH . H 5 HOH A 102 602 163 HOH HOH . H 5 HOH A 103 603 207 HOH HOH . H 5 HOH A 104 604 215 HOH HOH . H 5 HOH A 105 605 168 HOH HOH . H 5 HOH A 106 606 134 HOH HOH . H 5 HOH A 107 607 158 HOH HOH . H 5 HOH A 108 608 191 HOH HOH . H 5 HOH A 109 609 213 HOH HOH . H 5 HOH A 110 610 57 HOH HOH . H 5 HOH A 111 611 140 HOH HOH . H 5 HOH A 112 612 63 HOH HOH . H 5 HOH A 113 613 174 HOH HOH . H 5 HOH A 114 614 54 HOH HOH . I 5 HOH B 1 501 105 HOH HOH . I 5 HOH B 2 502 188 HOH HOH . I 5 HOH B 3 503 167 HOH HOH . I 5 HOH B 4 504 1 HOH HOH . I 5 HOH B 5 505 171 HOH HOH . I 5 HOH B 6 506 173 HOH HOH . I 5 HOH B 7 507 67 HOH HOH . I 5 HOH B 8 508 93 HOH HOH . I 5 HOH B 9 509 96 HOH HOH . I 5 HOH B 10 510 44 HOH HOH . I 5 HOH B 11 511 151 HOH HOH . I 5 HOH B 12 512 133 HOH HOH . I 5 HOH B 13 513 60 HOH HOH . I 5 HOH B 14 514 186 HOH HOH . I 5 HOH B 15 515 201 HOH HOH . I 5 HOH B 16 516 221 HOH HOH . I 5 HOH B 17 517 195 HOH HOH . I 5 HOH B 18 518 127 HOH HOH . I 5 HOH B 19 519 52 HOH HOH . I 5 HOH B 20 520 69 HOH HOH . I 5 HOH B 21 521 206 HOH HOH . I 5 HOH B 22 522 48 HOH HOH . I 5 HOH B 23 523 211 HOH HOH . I 5 HOH B 24 524 16 HOH HOH . I 5 HOH B 25 525 189 HOH HOH . I 5 HOH B 26 526 30 HOH HOH . I 5 HOH B 27 527 137 HOH HOH . I 5 HOH B 28 528 210 HOH HOH . I 5 HOH B 29 529 145 HOH HOH . I 5 HOH B 30 530 65 HOH HOH . I 5 HOH B 31 531 104 HOH HOH . I 5 HOH B 32 532 110 HOH HOH . I 5 HOH B 33 533 36 HOH HOH . I 5 HOH B 34 534 192 HOH HOH . I 5 HOH B 35 535 155 HOH HOH . I 5 HOH B 36 536 102 HOH HOH . I 5 HOH B 37 537 33 HOH HOH . I 5 HOH B 38 538 88 HOH HOH . I 5 HOH B 39 539 53 HOH HOH . I 5 HOH B 40 540 87 HOH HOH . I 5 HOH B 41 541 5 HOH HOH . I 5 HOH B 42 542 99 HOH HOH . I 5 HOH B 43 543 112 HOH HOH . I 5 HOH B 44 544 21 HOH HOH . I 5 HOH B 45 545 111 HOH HOH . I 5 HOH B 46 546 41 HOH HOH . I 5 HOH B 47 547 12 HOH HOH . I 5 HOH B 48 548 50 HOH HOH . I 5 HOH B 49 549 71 HOH HOH . I 5 HOH B 50 550 190 HOH HOH . I 5 HOH B 51 551 180 HOH HOH . I 5 HOH B 52 552 25 HOH HOH . I 5 HOH B 53 553 51 HOH HOH . I 5 HOH B 54 554 86 HOH HOH . I 5 HOH B 55 555 100 HOH HOH . I 5 HOH B 56 556 32 HOH HOH . I 5 HOH B 57 557 78 HOH HOH . I 5 HOH B 58 558 6 HOH HOH . I 5 HOH B 59 559 122 HOH HOH . I 5 HOH B 60 560 98 HOH HOH . I 5 HOH B 61 561 187 HOH HOH . I 5 HOH B 62 562 103 HOH HOH . I 5 HOH B 63 563 113 HOH HOH . I 5 HOH B 64 564 31 HOH HOH . I 5 HOH B 65 565 18 HOH HOH . I 5 HOH B 66 566 219 HOH HOH . I 5 HOH B 67 567 59 HOH HOH . I 5 HOH B 68 568 37 HOH HOH . I 5 HOH B 69 569 49 HOH HOH . I 5 HOH B 70 570 181 HOH HOH . I 5 HOH B 71 571 9 HOH HOH . I 5 HOH B 72 572 150 HOH HOH . I 5 HOH B 73 573 46 HOH HOH . I 5 HOH B 74 574 4 HOH HOH . I 5 HOH B 75 575 109 HOH HOH . I 5 HOH B 76 576 146 HOH HOH . I 5 HOH B 77 577 42 HOH HOH . I 5 HOH B 78 578 214 HOH HOH . I 5 HOH B 79 579 138 HOH HOH . I 5 HOH B 80 580 170 HOH HOH . I 5 HOH B 81 581 222 HOH HOH . I 5 HOH B 82 582 176 HOH HOH . I 5 HOH B 83 583 123 HOH HOH . I 5 HOH B 84 584 77 HOH HOH . I 5 HOH B 85 585 66 HOH HOH . I 5 HOH B 86 586 106 HOH HOH . I 5 HOH B 87 587 68 HOH HOH . I 5 HOH B 88 588 24 HOH HOH . I 5 HOH B 89 589 115 HOH HOH . I 5 HOH B 90 590 47 HOH HOH . I 5 HOH B 91 591 177 HOH HOH . I 5 HOH B 92 592 200 HOH HOH . I 5 HOH B 93 593 224 HOH HOH . I 5 HOH B 94 594 119 HOH HOH . I 5 HOH B 95 595 199 HOH HOH . I 5 HOH B 96 596 139 HOH HOH . I 5 HOH B 97 597 91 HOH HOH . I 5 HOH B 98 598 157 HOH HOH . I 5 HOH B 99 599 84 HOH HOH . I 5 HOH B 100 600 101 HOH HOH . I 5 HOH B 101 601 161 HOH HOH . I 5 HOH B 102 602 169 HOH HOH . I 5 HOH B 103 603 143 HOH HOH . I 5 HOH B 104 604 178 HOH HOH . I 5 HOH B 105 605 202 HOH HOH . I 5 HOH B 106 606 108 HOH HOH . I 5 HOH B 107 607 75 HOH HOH . I 5 HOH B 108 608 149 HOH HOH . I 5 HOH B 109 609 90 HOH HOH . I 5 HOH B 110 610 118 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 19.775 _atom_site.Cartn_y -19.242 _atom_site.Cartn_z -25.705 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 80.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #