data_5OR9 # _model_server_result.job_id IBbFjEv8J9eXiq4Jw5xHxQ _model_server_result.datetime_utc '2025-01-06 17:42:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5or9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2002}' # _entry.id 5OR9 # _exptl.entry_id 5OR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OR9 _cell.length_a 81.444 _cell.length_b 96.646 _cell.length_c 57.584 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5OR9 _atom_sites.fract_transf_matrix[1][1] 0.012278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JR5 A 1 2001 1 JR5 JR5 . C 3 EDO A 1 2002 1 EDO EDO . D 4 HOH A 1 2101 80 HOH HOH . D 4 HOH A 2 2102 23 HOH HOH . D 4 HOH A 3 2103 16 HOH HOH . D 4 HOH A 4 2104 15 HOH HOH . D 4 HOH A 5 2105 8 HOH HOH . D 4 HOH A 6 2106 7 HOH HOH . D 4 HOH A 7 2107 34 HOH HOH . D 4 HOH A 8 2108 25 HOH HOH . D 4 HOH A 9 2109 11 HOH HOH . D 4 HOH A 10 2110 1 HOH HOH . D 4 HOH A 11 2111 81 HOH HOH . D 4 HOH A 12 2112 43 HOH HOH . D 4 HOH A 13 2113 28 HOH HOH . D 4 HOH A 14 2114 12 HOH HOH . D 4 HOH A 15 2115 91 HOH HOH . D 4 HOH A 16 2116 17 HOH HOH . D 4 HOH A 17 2117 60 HOH HOH . D 4 HOH A 18 2118 13 HOH HOH . D 4 HOH A 19 2119 14 HOH HOH . D 4 HOH A 20 2120 54 HOH HOH . D 4 HOH A 21 2121 79 HOH HOH . D 4 HOH A 22 2122 47 HOH HOH . D 4 HOH A 23 2123 48 HOH HOH . D 4 HOH A 24 2124 88 HOH HOH . D 4 HOH A 25 2125 22 HOH HOH . D 4 HOH A 26 2126 6 HOH HOH . D 4 HOH A 27 2127 36 HOH HOH . D 4 HOH A 28 2128 42 HOH HOH . D 4 HOH A 29 2129 71 HOH HOH . D 4 HOH A 30 2130 72 HOH HOH . D 4 HOH A 31 2131 41 HOH HOH . D 4 HOH A 32 2132 18 HOH HOH . D 4 HOH A 33 2133 55 HOH HOH . D 4 HOH A 34 2134 45 HOH HOH . D 4 HOH A 35 2135 29 HOH HOH . D 4 HOH A 36 2136 24 HOH HOH . D 4 HOH A 37 2137 44 HOH HOH . D 4 HOH A 38 2138 31 HOH HOH . D 4 HOH A 39 2139 56 HOH HOH . D 4 HOH A 40 2140 19 HOH HOH . D 4 HOH A 41 2141 9 HOH HOH . D 4 HOH A 42 2142 21 HOH HOH . D 4 HOH A 43 2143 4 HOH HOH . D 4 HOH A 44 2144 76 HOH HOH . D 4 HOH A 45 2145 33 HOH HOH . D 4 HOH A 46 2146 3 HOH HOH . D 4 HOH A 47 2147 77 HOH HOH . D 4 HOH A 48 2148 35 HOH HOH . D 4 HOH A 49 2149 46 HOH HOH . D 4 HOH A 50 2150 27 HOH HOH . D 4 HOH A 51 2151 92 HOH HOH . D 4 HOH A 52 2152 84 HOH HOH . D 4 HOH A 53 2153 30 HOH HOH . D 4 HOH A 54 2154 20 HOH HOH . D 4 HOH A 55 2155 5 HOH HOH . D 4 HOH A 56 2156 51 HOH HOH . D 4 HOH A 57 2157 49 HOH HOH . D 4 HOH A 58 2158 61 HOH HOH . D 4 HOH A 59 2159 26 HOH HOH . D 4 HOH A 60 2160 67 HOH HOH . D 4 HOH A 61 2161 53 HOH HOH . D 4 HOH A 62 2162 57 HOH HOH . D 4 HOH A 63 2163 87 HOH HOH . D 4 HOH A 64 2164 64 HOH HOH . D 4 HOH A 65 2165 73 HOH HOH . D 4 HOH A 66 2166 2 HOH HOH . D 4 HOH A 67 2167 89 HOH HOH . D 4 HOH A 68 2168 63 HOH HOH . D 4 HOH A 69 2169 83 HOH HOH . D 4 HOH A 70 2170 58 HOH HOH . D 4 HOH A 71 2171 93 HOH HOH . D 4 HOH A 72 2172 62 HOH HOH . D 4 HOH A 73 2173 74 HOH HOH . D 4 HOH A 74 2174 52 HOH HOH . D 4 HOH A 75 2175 10 HOH HOH . D 4 HOH A 76 2176 68 HOH HOH . D 4 HOH A 77 2177 65 HOH HOH . D 4 HOH A 78 2178 78 HOH HOH . D 4 HOH A 79 2179 70 HOH HOH . D 4 HOH A 80 2180 50 HOH HOH . D 4 HOH A 81 2181 90 HOH HOH . D 4 HOH A 82 2182 39 HOH HOH . D 4 HOH A 83 2183 40 HOH HOH . D 4 HOH A 84 2184 59 HOH HOH . D 4 HOH A 85 2185 69 HOH HOH . D 4 HOH A 86 2186 75 HOH HOH . D 4 HOH A 87 2187 82 HOH HOH . D 4 HOH A 88 2188 37 HOH HOH . D 4 HOH A 89 2189 38 HOH HOH . D 4 HOH A 90 2190 66 HOH HOH . D 4 HOH A 91 2191 86 HOH HOH . D 4 HOH A 92 2192 85 HOH HOH . D 4 HOH A 93 2193 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 28.341 -2.114 -6.862 1 64.57 ? C1 EDO 2002 A 1 HETATM 2 O O1 EDO . . . C 3 27.582 -1.561 -7.942 1 73.96 ? O1 EDO 2002 A 1 HETATM 3 C C2 EDO . . . C 3 29.512 -1.189 -6.565 1 61.13 ? C2 EDO 2002 A 1 HETATM 4 O O2 EDO . . . C 3 30.639 -1.976 -6.17 1 62.86 ? O2 EDO 2002 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #