data_5ORB # _model_server_result.job_id tHaUU3q8M0MxTLymctXc6g _model_server_result.datetime_utc '2024-11-22 19:05:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5orb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 5ORB # _exptl.entry_id 5ORB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 317.406 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-methoxyphenyl)sulfanyl-~{N}-(2-methyl-5,6-dihydro-4~{H}-cyclopenta[c]pyrazol-3-yl)ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ORB _cell.length_a 80.906 _cell.length_b 96.788 _cell.length_c 57.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ORB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H19 N3 O2 S' _chem_comp.formula_weight 317.406 _chem_comp.id JR6 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-methoxyphenyl)sulfanyl-~{N}-(2-methyl-5,6-dihydro-4~{H}-cyclopenta[c]pyrazol-3-yl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 C09 JR6 doub 182 n n C08 C09 JR6 sing 183 n n C08 S07 JR6 sing 184 n n C09 N11 JR6 sing 185 n n C21 C22 JR6 doub 186 n y C21 C06 JR6 sing 187 n y C22 C03 JR6 sing 188 n y S07 C06 JR6 sing 189 n n N11 C12 JR6 sing 190 n n C06 C05 JR6 doub 191 n y C01 O02 JR6 sing 192 n n C12 C13 JR6 doub 193 n y C12 N19 JR6 sing 194 n y C20 N19 JR6 sing 195 n n C14 C13 JR6 sing 196 n n C14 C15 JR6 sing 197 n n C13 C17 JR6 sing 198 n y N19 N18 JR6 sing 199 n y C03 O02 JR6 sing 200 n n C03 C04 JR6 doub 201 n y C17 N18 JR6 doub 202 n y C17 C16 JR6 sing 203 n n C16 C15 JR6 sing 204 n n C05 C04 JR6 sing 205 n y C01 H1 JR6 sing 206 n n C01 H2 JR6 sing 207 n n C01 H3 JR6 sing 208 n n C04 H4 JR6 sing 209 n n C05 H5 JR6 sing 210 n n C08 H6 JR6 sing 211 n n C08 H7 JR6 sing 212 n n C14 H8 JR6 sing 213 n n C14 H9 JR6 sing 214 n n C15 H10 JR6 sing 215 n n C15 H11 JR6 sing 216 n n C16 H12 JR6 sing 217 n n C16 H13 JR6 sing 218 n n C20 H14 JR6 sing 219 n n C20 H15 JR6 sing 220 n n C20 H16 JR6 sing 221 n n C21 H17 JR6 sing 222 n n C22 H18 JR6 sing 223 n n N11 H19 JR6 sing 224 n n # _atom_sites.entry_id 5ORB _atom_sites.fract_transf_matrix[1][1] 0.01236 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JR6 A 1 2001 1 JR6 JR6 . C 3 EDO A 1 2002 1 EDO EDO . D 4 HOH A 1 2101 12 HOH HOH . D 4 HOH A 2 2102 6 HOH HOH . D 4 HOH A 3 2103 24 HOH HOH . D 4 HOH A 4 2104 68 HOH HOH . D 4 HOH A 5 2105 51 HOH HOH . D 4 HOH A 6 2106 7 HOH HOH . D 4 HOH A 7 2107 16 HOH HOH . D 4 HOH A 8 2108 13 HOH HOH . D 4 HOH A 9 2109 85 HOH HOH . D 4 HOH A 10 2110 20 HOH HOH . D 4 HOH A 11 2111 10 HOH HOH . D 4 HOH A 12 2112 19 HOH HOH . D 4 HOH A 13 2113 98 HOH HOH . D 4 HOH A 14 2114 66 HOH HOH . D 4 HOH A 15 2115 3 HOH HOH . D 4 HOH A 16 2116 2 HOH HOH . D 4 HOH A 17 2117 45 HOH HOH . D 4 HOH A 18 2118 11 HOH HOH . D 4 HOH A 19 2119 31 HOH HOH . D 4 HOH A 20 2120 28 HOH HOH . D 4 HOH A 21 2121 30 HOH HOH . D 4 HOH A 22 2122 79 HOH HOH . D 4 HOH A 23 2123 62 HOH HOH . D 4 HOH A 24 2124 56 HOH HOH . D 4 HOH A 25 2125 53 HOH HOH . D 4 HOH A 26 2126 84 HOH HOH . D 4 HOH A 27 2127 80 HOH HOH . D 4 HOH A 28 2128 34 HOH HOH . D 4 HOH A 29 2129 82 HOH HOH . D 4 HOH A 30 2130 5 HOH HOH . D 4 HOH A 31 2131 26 HOH HOH . D 4 HOH A 32 2132 40 HOH HOH . D 4 HOH A 33 2133 33 HOH HOH . D 4 HOH A 34 2134 8 HOH HOH . D 4 HOH A 35 2135 9 HOH HOH . D 4 HOH A 36 2136 49 HOH HOH . D 4 HOH A 37 2137 39 HOH HOH . D 4 HOH A 38 2138 99 HOH HOH . D 4 HOH A 39 2139 14 HOH HOH . D 4 HOH A 40 2140 15 HOH HOH . D 4 HOH A 41 2141 60 HOH HOH . D 4 HOH A 42 2142 41 HOH HOH . D 4 HOH A 43 2143 38 HOH HOH . D 4 HOH A 44 2144 1 HOH HOH . D 4 HOH A 45 2145 17 HOH HOH . D 4 HOH A 46 2146 73 HOH HOH . D 4 HOH A 47 2147 90 HOH HOH . D 4 HOH A 48 2148 57 HOH HOH . D 4 HOH A 49 2149 4 HOH HOH . D 4 HOH A 50 2150 59 HOH HOH . D 4 HOH A 51 2151 36 HOH HOH . D 4 HOH A 52 2152 89 HOH HOH . D 4 HOH A 53 2153 32 HOH HOH . D 4 HOH A 54 2154 21 HOH HOH . D 4 HOH A 55 2155 37 HOH HOH . D 4 HOH A 56 2156 61 HOH HOH . D 4 HOH A 57 2157 97 HOH HOH . D 4 HOH A 58 2158 46 HOH HOH . D 4 HOH A 59 2159 52 HOH HOH . D 4 HOH A 60 2160 43 HOH HOH . D 4 HOH A 61 2161 50 HOH HOH . D 4 HOH A 62 2162 44 HOH HOH . D 4 HOH A 63 2163 65 HOH HOH . D 4 HOH A 64 2164 83 HOH HOH . D 4 HOH A 65 2165 71 HOH HOH . D 4 HOH A 66 2166 23 HOH HOH . D 4 HOH A 67 2167 67 HOH HOH . D 4 HOH A 68 2168 25 HOH HOH . D 4 HOH A 69 2169 87 HOH HOH . D 4 HOH A 70 2170 76 HOH HOH . D 4 HOH A 71 2171 64 HOH HOH . D 4 HOH A 72 2172 63 HOH HOH . D 4 HOH A 73 2173 42 HOH HOH . D 4 HOH A 74 2174 35 HOH HOH . D 4 HOH A 75 2175 100 HOH HOH . D 4 HOH A 76 2176 29 HOH HOH . D 4 HOH A 77 2177 96 HOH HOH . D 4 HOH A 78 2178 91 HOH HOH . D 4 HOH A 79 2179 88 HOH HOH . D 4 HOH A 80 2180 75 HOH HOH . D 4 HOH A 81 2181 95 HOH HOH . D 4 HOH A 82 2182 93 HOH HOH . D 4 HOH A 83 2183 81 HOH HOH . D 4 HOH A 84 2184 72 HOH HOH . D 4 HOH A 85 2185 94 HOH HOH . D 4 HOH A 86 2186 70 HOH HOH . D 4 HOH A 87 2187 22 HOH HOH . D 4 HOH A 88 2188 18 HOH HOH . D 4 HOH A 89 2189 55 HOH HOH . D 4 HOH A 90 2190 74 HOH HOH . D 4 HOH A 91 2191 48 HOH HOH . D 4 HOH A 92 2192 69 HOH HOH . D 4 HOH A 93 2193 92 HOH HOH . D 4 HOH A 94 2194 54 HOH HOH . D 4 HOH A 95 2195 86 HOH HOH . D 4 HOH A 96 2196 58 HOH HOH . D 4 HOH A 97 2197 78 HOH HOH . D 4 HOH A 98 2198 27 HOH HOH . D 4 HOH A 99 2199 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 JR6 . . . B 2 -35.305 -7.26 0.303 1 92.77 ? C01 JR6 2001 A 1 HETATM 2 C C03 JR6 . . . B 2 -33.309 -8.389 0.879 1 88.68 ? C03 JR6 2001 A 1 HETATM 3 C C04 JR6 . . . B 2 -32.456 -8.868 1.866 1 83.79 ? C04 JR6 2001 A 1 HETATM 4 C C05 JR6 . . . B 2 -31.567 -9.889 1.577 1 80.94 ? C05 JR6 2001 A 1 HETATM 5 C C06 JR6 . . . B 2 -31.531 -10.435 0.301 1 81.15 ? C06 JR6 2001 A 1 HETATM 6 C C08 JR6 . . . B 2 -29.352 -11.341 -1.526 1 67.62 ? C08 JR6 2001 A 1 HETATM 7 C C09 JR6 . . . B 2 -28.332 -10.292 -1.093 1 58.39 ? C09 JR6 2001 A 1 HETATM 8 C C12 JR6 . . . B 2 -26.445 -9.574 0.459 1 42.58 ? C12 JR6 2001 A 1 HETATM 9 C C13 JR6 . . . B 2 -26.697 -8.226 0.695 1 35.47 ? C13 JR6 2001 A 1 HETATM 10 C C14 JR6 . . . B 2 -27.803 -7.162 0.669 1 26.56 ? C14 JR6 2001 A 1 HETATM 11 C C15 JR6 . . . B 2 -27.259 -5.965 1.408 1 32.66 ? C15 JR6 2001 A 1 HETATM 12 C C16 JR6 . . . B 2 -25.746 -6.139 1.378 1 32.27 ? C16 JR6 2001 A 1 HETATM 13 C C17 JR6 . . . B 2 -25.497 -7.643 1.102 1 38.62 ? C17 JR6 2001 A 1 HETATM 14 C C20 JR6 . . . B 2 -24.48 -11.061 0.596 1 38.46 ? C20 JR6 2001 A 1 HETATM 15 C C21 JR6 . . . B 2 -32.381 -9.959 -0.683 1 80.99 ? C21 JR6 2001 A 1 HETATM 16 C C22 JR6 . . . B 2 -33.268 -8.936 -0.394 1 85.05 ? C22 JR6 2001 A 1 HETATM 17 N N11 JR6 . . . B 2 -27.425 -10.562 0.015 1 52.48 ? N11 JR6 2001 A 1 HETATM 18 N N18 JR6 . . . B 2 -24.549 -8.614 1.118 1 39.74 ? N18 JR6 2001 A 1 HETATM 19 N N19 JR6 . . . B 2 -25.16 -9.781 0.714 1 36.75 ? N19 JR6 2001 A 1 HETATM 20 O O02 JR6 . . . B 2 -34.206 -7.355 1.17 1 93.3 ? O02 JR6 2001 A 1 HETATM 21 O O10 JR6 . . . B 2 -28.291 -9.26 -1.664 1 55.84 ? O10 JR6 2001 A 1 HETATM 22 S S07 JR6 . . . B 2 -30.366 -11.775 -0.083 1 79.47 ? S07 JR6 2001 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #