data_5ORJ # _model_server_result.job_id PEozmTMG3ha5QJOL4Mxabg _model_server_result.datetime_utc '2024-11-24 16:51:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5orj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":407}' # _entry.id 5ORJ # _exptl.entry_id 5ORJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ORJ _cell.length_a 64.79 _cell.length_b 68.597 _cell.length_c 333.66 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ORJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 184 B ASN 161 1_555 C MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 A OD2 ASP 198 B ASP 175 1_555 C MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 C MG MG . B MG 401 1_555 E O2A ADP . B ADP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 C MG MG . B MG 401 1_555 E O2B ADP . B ADP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 D MG MG . B MG 402 1_555 E O1A ADP . B ADP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc6 B OD1 ASN 184 A ASN 161 1_555 I MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc7 B OD2 ASP 198 A ASP 175 1_555 I MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc8 G MG MG . A MG 401 1_555 J O2A ADP . A ADP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc9 G MG MG . A MG 401 1_555 O O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc10 I MG MG . A MG 403 1_555 J O1B ADP . A ADP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc11 I MG MG . A MG 403 1_555 J O1A ADP . A ADP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 230 n n C1 C6 IHP sing 231 n n C1 O11 IHP sing 232 n n C1 H1 IHP sing 233 n n C2 C3 IHP sing 234 n n C2 O12 IHP sing 235 n n C2 H2 IHP sing 236 n n C3 C4 IHP sing 237 n n C3 O13 IHP sing 238 n n C3 H3 IHP sing 239 n n C4 C5 IHP sing 240 n n C4 O14 IHP sing 241 n n C4 H4 IHP sing 242 n n C5 C6 IHP sing 243 n n C5 O15 IHP sing 244 n n C5 H5 IHP sing 245 n n C6 O16 IHP sing 246 n n C6 H6 IHP sing 247 n n O11 P1 IHP sing 248 n n P1 O21 IHP doub 249 n n P1 O31 IHP sing 250 n n P1 O41 IHP sing 251 n n O31 H31 IHP sing 252 n n O41 H41 IHP sing 253 n n O12 P2 IHP sing 254 n n P2 O22 IHP doub 255 n n P2 O32 IHP sing 256 n n P2 O42 IHP sing 257 n n O32 H32 IHP sing 258 n n O42 H42 IHP sing 259 n n O13 P3 IHP sing 260 n n P3 O23 IHP doub 261 n n P3 O33 IHP sing 262 n n P3 O43 IHP sing 263 n n O33 H33 IHP sing 264 n n O43 H43 IHP sing 265 n n O14 P4 IHP sing 266 n n P4 O24 IHP doub 267 n n P4 O34 IHP sing 268 n n P4 O44 IHP sing 269 n n O34 H34 IHP sing 270 n n O44 H44 IHP sing 271 n n O15 P5 IHP sing 272 n n P5 O25 IHP doub 273 n n P5 O35 IHP sing 274 n n P5 O45 IHP sing 275 n n O35 H35 IHP sing 276 n n O45 H45 IHP sing 277 n n O16 P6 IHP sing 278 n n P6 O26 IHP doub 279 n n P6 O36 IHP sing 280 n n P6 O46 IHP sing 281 n n O36 H36 IHP sing 282 n n O46 H46 IHP sing 283 n n # _atom_sites.entry_id 5ORJ _atom_sites.fract_transf_matrix[1][1] 0.015434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014578 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG B 1 401 4 MG MG . D 2 MG B 1 402 5 MG MG . E 3 ADP B 1 403 2 ADP ADP . F 4 A4Q B 1 404 2 A4Q L07 . G 2 MG A 1 401 1 MG MG . H 2 MG A 1 402 2 MG MG . I 2 MG A 1 403 3 MG MG . J 3 ADP A 1 404 1 ADP ADP . K 4 A4Q A 1 405 1 A4Q L07 . L 4 A4Q A 1 406 3 A4Q L07 . M 5 IHP A 1 407 1 IHP I6P . N 6 HOH B 1 501 73 HOH HOH . N 6 HOH B 2 502 85 HOH HOH . N 6 HOH B 3 503 45 HOH HOH . N 6 HOH B 4 504 158 HOH HOH . N 6 HOH B 5 505 52 HOH HOH . N 6 HOH B 6 506 32 HOH HOH . N 6 HOH B 7 507 76 HOH HOH . N 6 HOH B 8 508 163 HOH HOH . N 6 HOH B 9 509 112 HOH HOH . N 6 HOH B 10 510 62 HOH HOH . N 6 HOH B 11 511 113 HOH HOH . N 6 HOH B 12 512 31 HOH HOH . N 6 HOH B 13 513 96 HOH HOH . N 6 HOH B 14 514 100 HOH HOH . N 6 HOH B 15 515 156 HOH HOH . N 6 HOH B 16 516 101 HOH HOH . N 6 HOH B 17 517 24 HOH HOH . N 6 HOH B 18 518 121 HOH HOH . N 6 HOH B 19 519 122 HOH HOH . N 6 HOH B 20 520 169 HOH HOH . N 6 HOH B 21 521 157 HOH HOH . N 6 HOH B 22 522 109 HOH HOH . N 6 HOH B 23 523 48 HOH HOH . N 6 HOH B 24 524 132 HOH HOH . N 6 HOH B 25 525 150 HOH HOH . N 6 HOH B 26 526 138 HOH HOH . N 6 HOH B 27 527 75 HOH HOH . N 6 HOH B 28 528 68 HOH HOH . N 6 HOH B 29 529 47 HOH HOH . N 6 HOH B 30 530 95 HOH HOH . N 6 HOH B 31 531 143 HOH HOH . N 6 HOH B 32 532 131 HOH HOH . N 6 HOH B 33 533 144 HOH HOH . O 6 HOH A 1 501 16 HOH HOH . O 6 HOH A 2 502 124 HOH HOH . O 6 HOH A 3 503 50 HOH HOH . O 6 HOH A 4 504 108 HOH HOH . O 6 HOH A 5 505 111 HOH HOH . O 6 HOH A 6 506 105 HOH HOH . O 6 HOH A 7 507 34 HOH HOH . O 6 HOH A 8 508 18 HOH HOH . O 6 HOH A 9 509 5 HOH HOH . O 6 HOH A 10 510 70 HOH HOH . O 6 HOH A 11 511 118 HOH HOH . O 6 HOH A 12 512 35 HOH HOH . O 6 HOH A 13 513 33 HOH HOH . O 6 HOH A 14 514 74 HOH HOH . O 6 HOH A 15 515 30 HOH HOH . O 6 HOH A 16 516 57 HOH HOH . O 6 HOH A 17 517 7 HOH HOH . O 6 HOH A 18 518 175 HOH HOH . O 6 HOH A 19 519 102 HOH HOH . O 6 HOH A 20 520 117 HOH HOH . O 6 HOH A 21 521 14 HOH HOH . O 6 HOH A 22 522 173 HOH HOH . O 6 HOH A 23 523 152 HOH HOH . O 6 HOH A 24 524 81 HOH HOH . O 6 HOH A 25 525 10 HOH HOH . O 6 HOH A 26 526 141 HOH HOH . O 6 HOH A 27 527 147 HOH HOH . O 6 HOH A 28 528 27 HOH HOH . O 6 HOH A 29 529 9 HOH HOH . O 6 HOH A 30 530 36 HOH HOH . O 6 HOH A 31 531 103 HOH HOH . O 6 HOH A 32 532 12 HOH HOH . O 6 HOH A 33 533 21 HOH HOH . O 6 HOH A 34 534 149 HOH HOH . O 6 HOH A 35 535 171 HOH HOH . O 6 HOH A 36 536 84 HOH HOH . O 6 HOH A 37 537 165 HOH HOH . O 6 HOH A 38 538 97 HOH HOH . O 6 HOH A 39 539 69 HOH HOH . O 6 HOH A 40 540 28 HOH HOH . O 6 HOH A 41 541 4 HOH HOH . O 6 HOH A 42 542 66 HOH HOH . O 6 HOH A 43 543 17 HOH HOH . O 6 HOH A 44 544 140 HOH HOH . O 6 HOH A 45 545 116 HOH HOH . O 6 HOH A 46 546 106 HOH HOH . O 6 HOH A 47 547 126 HOH HOH . O 6 HOH A 48 548 164 HOH HOH . O 6 HOH A 49 549 88 HOH HOH . O 6 HOH A 50 550 119 HOH HOH . O 6 HOH A 51 551 115 HOH HOH . O 6 HOH A 52 552 25 HOH HOH . O 6 HOH A 53 553 49 HOH HOH . O 6 HOH A 54 554 13 HOH HOH . O 6 HOH A 55 555 168 HOH HOH . O 6 HOH A 56 556 29 HOH HOH . O 6 HOH A 57 557 53 HOH HOH . O 6 HOH A 58 558 65 HOH HOH . O 6 HOH A 59 559 146 HOH HOH . O 6 HOH A 60 560 125 HOH HOH . O 6 HOH A 61 561 155 HOH HOH . O 6 HOH A 62 562 92 HOH HOH . O 6 HOH A 63 563 133 HOH HOH . O 6 HOH A 64 564 159 HOH HOH . O 6 HOH A 65 565 3 HOH HOH . O 6 HOH A 66 566 114 HOH HOH . O 6 HOH A 67 567 120 HOH HOH . O 6 HOH A 68 568 51 HOH HOH . O 6 HOH A 69 569 166 HOH HOH . O 6 HOH A 70 570 104 HOH HOH . O 6 HOH A 71 571 39 HOH HOH . O 6 HOH A 72 572 43 HOH HOH . O 6 HOH A 73 573 78 HOH HOH . O 6 HOH A 74 574 153 HOH HOH . O 6 HOH A 75 575 123 HOH HOH . O 6 HOH A 76 576 56 HOH HOH . O 6 HOH A 77 577 54 HOH HOH . O 6 HOH A 78 578 23 HOH HOH . O 6 HOH A 79 579 176 HOH HOH . O 6 HOH A 80 580 41 HOH HOH . O 6 HOH A 81 581 142 HOH HOH . O 6 HOH A 82 582 64 HOH HOH . O 6 HOH A 83 583 72 HOH HOH . O 6 HOH A 84 584 161 HOH HOH . O 6 HOH A 85 585 82 HOH HOH . O 6 HOH A 86 586 42 HOH HOH . O 6 HOH A 87 587 20 HOH HOH . O 6 HOH A 88 588 86 HOH HOH . O 6 HOH A 89 589 135 HOH HOH . O 6 HOH A 90 590 107 HOH HOH . O 6 HOH A 91 591 79 HOH HOH . O 6 HOH A 92 592 170 HOH HOH . O 6 HOH A 93 593 162 HOH HOH . O 6 HOH A 94 594 167 HOH HOH . O 6 HOH A 95 595 80 HOH HOH . O 6 HOH A 96 596 151 HOH HOH . O 6 HOH A 97 597 37 HOH HOH . O 6 HOH A 98 598 139 HOH HOH . O 6 HOH A 99 599 71 HOH HOH . O 6 HOH A 100 600 145 HOH HOH . O 6 HOH A 101 601 77 HOH HOH . O 6 HOH A 102 602 99 HOH HOH . O 6 HOH A 103 603 19 HOH HOH . O 6 HOH A 104 604 174 HOH HOH . O 6 HOH A 105 605 160 HOH HOH . O 6 HOH A 106 606 128 HOH HOH . O 6 HOH A 107 607 63 HOH HOH . O 6 HOH A 108 608 89 HOH HOH . O 6 HOH A 109 609 127 HOH HOH . O 6 HOH A 110 610 137 HOH HOH . O 6 HOH A 111 611 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . M 5 10.318 136.49 333.663 1 199.73 ? C1 IHP 407 A 1 HETATM 2 C C2 IHP . . . M 5 10.37 137.983 333.903 1 199.45 ? C2 IHP 407 A 1 HETATM 3 C C3 IHP . . . M 5 9.101 138.792 333.649 1 199.58 ? C3 IHP 407 A 1 HETATM 4 C C4 IHP . . . M 5 7.89 137.925 333.928 1 200.36 ? C4 IHP 407 A 1 HETATM 5 C C5 IHP . . . M 5 8.054 136.533 333.329 1 200.53 ? C5 IHP 407 A 1 HETATM 6 C C6 IHP . . . M 5 9.065 135.885 334.217 1 200.29 ? C6 IHP 407 A 1 HETATM 7 O O11 IHP . . . M 5 11.424 136.023 334.383 1 199.42 ? O11 IHP 407 A 1 HETATM 8 P P1 IHP . . . M 5 12.5 135.115 333.7 1 198.93 ? P1 IHP 407 A 1 HETATM 9 O O21 IHP . . . M 5 13.422 136.092 333.092 1 198.79 ? O21 IHP 407 A 1 HETATM 10 O O31 IHP . . . M 5 11.68 134.303 332.774 1 199.1 ? O31 IHP 407 A 1 HETATM 11 O O41 IHP . . . M 5 13.067 134.362 334.847 1 198.86 ? O41 IHP 407 A 1 HETATM 12 O O12 IHP . . . M 5 11.419 138.361 333.048 1 199 ? O12 IHP 407 A 1 HETATM 13 P P2 IHP . . . M 5 12.523 139.307 333.614 1 198.14 ? P2 IHP 407 A 1 HETATM 14 O O22 IHP . . . M 5 13.035 140.012 332.412 1 198.05 ? O22 IHP 407 A 1 HETATM 15 O O32 IHP . . . M 5 11.732 140.154 334.536 1 198.26 ? O32 IHP 407 A 1 HETATM 16 O O42 IHP . . . M 5 13.473 138.363 334.229 1 197.84 ? O42 IHP 407 A 1 HETATM 17 O O13 IHP . . . M 5 9.066 139.277 332.312 1 199 ? O13 IHP 407 A 1 HETATM 18 P P3 IHP . . . M 5 8.728 140.767 331.819 1 198.22 ? P3 IHP 407 A 1 HETATM 19 O O23 IHP . . . M 5 9.247 141.748 332.804 1 197.55 ? O23 IHP 407 A 1 HETATM 20 O O33 IHP . . . M 5 9.434 140.909 330.518 1 198.19 ? O33 IHP 407 A 1 HETATM 21 O O43 IHP . . . M 5 7.242 140.731 331.711 1 198.3 ? O43 IHP 407 A 1 HETATM 22 O O14 IHP . . . M 5 6.77 138.612 333.429 1 200.91 ? O14 IHP 407 A 1 HETATM 23 P P4 IHP . . . M 5 5.322 137.971 333.63 1 201.06 ? P4 IHP 407 A 1 HETATM 24 O O24 IHP . . . M 5 5.471 137.113 334.854 1 201.04 ? O24 IHP 407 A 1 HETATM 25 O O34 IHP . . . M 5 4.436 139.171 333.769 1 201.31 ? O34 IHP 407 A 1 HETATM 26 O O44 IHP . . . M 5 5.111 137.238 332.338 1 200.83 ? O44 IHP 407 A 1 HETATM 27 O O15 IHP . . . M 5 6.904 135.706 333.284 1 200.77 ? O15 IHP 407 A 1 HETATM 28 P P5 IHP . . . M 5 6.653 134.687 332.056 1 200.84 ? P5 IHP 407 A 1 HETATM 29 O O25 IHP . . . M 5 7.454 135.197 330.897 1 200.64 ? O25 IHP 407 A 1 HETATM 30 O O35 IHP . . . M 5 7.098 133.387 332.657 1 200.78 ? O35 IHP 407 A 1 HETATM 31 O O45 IHP . . . M 5 5.199 134.757 331.741 1 201.01 ? O45 IHP 407 A 1 HETATM 32 O O16 IHP . . . M 5 9.069 134.469 334.139 1 200.8 ? O16 IHP 407 A 1 HETATM 33 P P6 IHP . . . M 5 8.742 133.602 335.447 1 201.28 ? P6 IHP 407 A 1 HETATM 34 O O26 IHP . . . M 5 8.668 132.169 335.038 1 201.25 ? O26 IHP 407 A 1 HETATM 35 O O36 IHP . . . M 5 9.885 133.807 336.364 1 201.18 ? O36 IHP 407 A 1 HETATM 36 O O46 IHP . . . M 5 7.462 134.223 335.905 1 201.52 ? O46 IHP 407 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #