data_5ORL # _model_server_result.job_id T-5qagk9Qba5bH5ZQm86kg _model_server_result.datetime_utc '2024-10-21 23:15:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5orl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5ORL # _exptl.entry_id 5ORL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ORL _cell.length_a 81.62 _cell.length_b 81.62 _cell.length_c 175.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ORL _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 121 A CYS 247 1_555 H S08 A4W . A A4W 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc3 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? covale ? covale2 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? metalc ? metalc4 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc6 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc7 C MG MG . A MG 402 1_555 I O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc8 C MG MG . A MG 402 1_555 I O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 D MG MG . A MG 403 1_555 I O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 D MG MG . A MG 403 1_555 I O HOH . A HOH 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc11 D MG MG . A MG 403 1_555 I O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc12 D MG MG . A MG 403 1_555 I O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ORL _atom_sites.fract_transf_matrix[1][1] 0.012252 _atom_sites.fract_transf_matrix[1][2] 0.007074 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 CL A 1 404 1 CL CL . F 4 CL A 1 405 2 CL CL . G 4 CL A 1 406 3 CL CL . H 5 A4W A 1 407 1 A4W LIG . I 6 HOH A 1 501 130 HOH HOH . I 6 HOH A 2 502 25 HOH HOH . I 6 HOH A 3 503 148 HOH HOH . I 6 HOH A 4 504 211 HOH HOH . I 6 HOH A 5 505 72 HOH HOH . I 6 HOH A 6 506 8 HOH HOH . I 6 HOH A 7 507 155 HOH HOH . I 6 HOH A 8 508 215 HOH HOH . I 6 HOH A 9 509 150 HOH HOH . I 6 HOH A 10 510 90 HOH HOH . I 6 HOH A 11 511 60 HOH HOH . I 6 HOH A 12 512 184 HOH HOH . I 6 HOH A 13 513 29 HOH HOH . I 6 HOH A 14 514 93 HOH HOH . I 6 HOH A 15 515 49 HOH HOH . I 6 HOH A 16 516 172 HOH HOH . I 6 HOH A 17 517 121 HOH HOH . I 6 HOH A 18 518 201 HOH HOH . I 6 HOH A 19 519 79 HOH HOH . I 6 HOH A 20 520 24 HOH HOH . I 6 HOH A 21 521 127 HOH HOH . I 6 HOH A 22 522 106 HOH HOH . I 6 HOH A 23 523 166 HOH HOH . I 6 HOH A 24 524 85 HOH HOH . I 6 HOH A 25 525 210 HOH HOH . I 6 HOH A 26 526 146 HOH HOH . I 6 HOH A 27 527 62 HOH HOH . I 6 HOH A 28 528 167 HOH HOH . I 6 HOH A 29 529 97 HOH HOH . I 6 HOH A 30 530 17 HOH HOH . I 6 HOH A 31 531 41 HOH HOH . I 6 HOH A 32 532 56 HOH HOH . I 6 HOH A 33 533 69 HOH HOH . I 6 HOH A 34 534 84 HOH HOH . I 6 HOH A 35 535 6 HOH HOH . I 6 HOH A 36 536 111 HOH HOH . I 6 HOH A 37 537 139 HOH HOH . I 6 HOH A 38 538 144 HOH HOH . I 6 HOH A 39 539 3 HOH HOH . I 6 HOH A 40 540 136 HOH HOH . I 6 HOH A 41 541 48 HOH HOH . I 6 HOH A 42 542 115 HOH HOH . I 6 HOH A 43 543 161 HOH HOH . I 6 HOH A 44 544 43 HOH HOH . I 6 HOH A 45 545 89 HOH HOH . I 6 HOH A 46 546 19 HOH HOH . I 6 HOH A 47 547 31 HOH HOH . I 6 HOH A 48 548 2 HOH HOH . I 6 HOH A 49 549 44 HOH HOH . I 6 HOH A 50 550 33 HOH HOH . I 6 HOH A 51 551 50 HOH HOH . I 6 HOH A 52 552 91 HOH HOH . I 6 HOH A 53 553 13 HOH HOH . I 6 HOH A 54 554 18 HOH HOH . I 6 HOH A 55 555 110 HOH HOH . I 6 HOH A 56 556 14 HOH HOH . I 6 HOH A 57 557 174 HOH HOH . I 6 HOH A 58 558 12 HOH HOH . I 6 HOH A 59 559 73 HOH HOH . I 6 HOH A 60 560 16 HOH HOH . I 6 HOH A 61 561 200 HOH HOH . I 6 HOH A 62 562 124 HOH HOH . I 6 HOH A 63 563 112 HOH HOH . I 6 HOH A 64 564 129 HOH HOH . I 6 HOH A 65 565 81 HOH HOH . I 6 HOH A 66 566 181 HOH HOH . I 6 HOH A 67 567 34 HOH HOH . I 6 HOH A 68 568 32 HOH HOH . I 6 HOH A 69 569 137 HOH HOH . I 6 HOH A 70 570 27 HOH HOH . I 6 HOH A 71 571 132 HOH HOH . I 6 HOH A 72 572 1 HOH HOH . I 6 HOH A 73 573 212 HOH HOH . I 6 HOH A 74 574 39 HOH HOH . I 6 HOH A 75 575 96 HOH HOH . I 6 HOH A 76 576 66 HOH HOH . I 6 HOH A 77 577 159 HOH HOH . I 6 HOH A 78 578 88 HOH HOH . I 6 HOH A 79 579 133 HOH HOH . I 6 HOH A 80 580 171 HOH HOH . I 6 HOH A 81 581 11 HOH HOH . I 6 HOH A 82 582 70 HOH HOH . I 6 HOH A 83 583 177 HOH HOH . I 6 HOH A 84 584 61 HOH HOH . I 6 HOH A 85 585 76 HOH HOH . I 6 HOH A 86 586 64 HOH HOH . I 6 HOH A 87 587 37 HOH HOH . I 6 HOH A 88 588 47 HOH HOH . I 6 HOH A 89 589 28 HOH HOH . I 6 HOH A 90 590 45 HOH HOH . I 6 HOH A 91 591 78 HOH HOH . I 6 HOH A 92 592 80 HOH HOH . I 6 HOH A 93 593 205 HOH HOH . I 6 HOH A 94 594 116 HOH HOH . I 6 HOH A 95 595 113 HOH HOH . I 6 HOH A 96 596 5 HOH HOH . I 6 HOH A 97 597 151 HOH HOH . I 6 HOH A 98 598 23 HOH HOH . I 6 HOH A 99 599 175 HOH HOH . I 6 HOH A 100 600 10 HOH HOH . I 6 HOH A 101 601 109 HOH HOH . I 6 HOH A 102 602 15 HOH HOH . I 6 HOH A 103 603 40 HOH HOH . I 6 HOH A 104 604 7 HOH HOH . I 6 HOH A 105 605 35 HOH HOH . I 6 HOH A 106 606 179 HOH HOH . I 6 HOH A 107 607 77 HOH HOH . I 6 HOH A 108 608 135 HOH HOH . I 6 HOH A 109 609 165 HOH HOH . I 6 HOH A 110 610 42 HOH HOH . I 6 HOH A 111 611 131 HOH HOH . I 6 HOH A 112 612 160 HOH HOH . I 6 HOH A 113 613 125 HOH HOH . I 6 HOH A 114 614 21 HOH HOH . I 6 HOH A 115 615 216 HOH HOH . I 6 HOH A 116 616 95 HOH HOH . I 6 HOH A 117 617 154 HOH HOH . I 6 HOH A 118 618 173 HOH HOH . I 6 HOH A 119 619 183 HOH HOH . I 6 HOH A 120 620 68 HOH HOH . I 6 HOH A 121 621 196 HOH HOH . I 6 HOH A 122 622 199 HOH HOH . I 6 HOH A 123 623 168 HOH HOH . I 6 HOH A 124 624 103 HOH HOH . I 6 HOH A 125 625 36 HOH HOH . I 6 HOH A 126 626 193 HOH HOH . I 6 HOH A 127 627 59 HOH HOH . I 6 HOH A 128 628 204 HOH HOH . I 6 HOH A 129 629 140 HOH HOH . I 6 HOH A 130 630 9 HOH HOH . I 6 HOH A 131 631 147 HOH HOH . I 6 HOH A 132 632 156 HOH HOH . I 6 HOH A 133 633 214 HOH HOH . I 6 HOH A 134 634 143 HOH HOH . I 6 HOH A 135 635 100 HOH HOH . I 6 HOH A 136 636 158 HOH HOH . I 6 HOH A 137 637 63 HOH HOH . I 6 HOH A 138 638 54 HOH HOH . I 6 HOH A 139 639 94 HOH HOH . I 6 HOH A 140 640 122 HOH HOH . I 6 HOH A 141 641 169 HOH HOH . I 6 HOH A 142 642 26 HOH HOH . I 6 HOH A 143 643 20 HOH HOH . I 6 HOH A 144 644 74 HOH HOH . I 6 HOH A 145 645 55 HOH HOH . I 6 HOH A 146 646 118 HOH HOH . I 6 HOH A 147 647 123 HOH HOH . I 6 HOH A 148 648 30 HOH HOH . I 6 HOH A 149 649 52 HOH HOH . I 6 HOH A 150 650 194 HOH HOH . I 6 HOH A 151 651 53 HOH HOH . I 6 HOH A 152 652 191 HOH HOH . I 6 HOH A 153 653 206 HOH HOH . I 6 HOH A 154 654 164 HOH HOH . I 6 HOH A 155 655 75 HOH HOH . I 6 HOH A 156 656 188 HOH HOH . I 6 HOH A 157 657 186 HOH HOH . I 6 HOH A 158 658 57 HOH HOH . I 6 HOH A 159 659 4 HOH HOH . I 6 HOH A 160 660 71 HOH HOH . I 6 HOH A 161 661 202 HOH HOH . I 6 HOH A 162 662 163 HOH HOH . I 6 HOH A 163 663 138 HOH HOH . I 6 HOH A 164 664 104 HOH HOH . I 6 HOH A 165 665 145 HOH HOH . I 6 HOH A 166 666 218 HOH HOH . I 6 HOH A 167 667 65 HOH HOH . I 6 HOH A 168 668 207 HOH HOH . I 6 HOH A 169 669 176 HOH HOH . I 6 HOH A 170 670 170 HOH HOH . I 6 HOH A 171 671 142 HOH HOH . I 6 HOH A 172 672 190 HOH HOH . I 6 HOH A 173 673 38 HOH HOH . I 6 HOH A 174 674 108 HOH HOH . I 6 HOH A 175 675 98 HOH HOH . I 6 HOH A 176 676 51 HOH HOH . I 6 HOH A 177 677 187 HOH HOH . I 6 HOH A 178 678 217 HOH HOH . I 6 HOH A 179 679 102 HOH HOH . I 6 HOH A 180 680 198 HOH HOH . I 6 HOH A 181 681 134 HOH HOH . I 6 HOH A 182 682 83 HOH HOH . I 6 HOH A 183 683 157 HOH HOH . I 6 HOH A 184 684 87 HOH HOH . I 6 HOH A 185 685 126 HOH HOH . I 6 HOH A 186 686 203 HOH HOH . I 6 HOH A 187 687 141 HOH HOH . I 6 HOH A 188 688 22 HOH HOH . I 6 HOH A 189 689 120 HOH HOH . I 6 HOH A 190 690 192 HOH HOH . I 6 HOH A 191 691 149 HOH HOH . I 6 HOH A 192 692 101 HOH HOH . I 6 HOH A 193 693 195 HOH HOH . I 6 HOH A 194 694 153 HOH HOH . I 6 HOH A 195 695 99 HOH HOH . I 6 HOH A 196 696 117 HOH HOH . I 6 HOH A 197 697 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -12.279 23.62 -6.66 1 32.9 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . B 2 -12.902 23.243 -8.038 1 29.18 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . B 2 -11.73 22.376 -5.974 1 29.67 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . B 2 -13.122 24.516 -5.757 1 27.36 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . B 2 -10.727 26.012 -7.51 1 26.41 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . B 2 -10.533 26.102 -9.034 1 27.72 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . B 2 -11.877 26.803 -6.958 1 25.52 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . B 2 -10.894 24.479 -7.023 1 27.15 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . B 2 -9.282 26.45 -6.857 1 26.33 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . B 2 -9.195 26.348 -5.414 1 25.95 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . B 2 -8.435 27.563 -4.845 1 25.73 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . B 2 -7.167 27.774 -5.478 1 26.02 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . B 2 -9.162 28.875 -5.093 1 26.44 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . B 2 -10.266 29.058 -4.181 1 25.88 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . B 2 -8.032 29.907 -4.993 1 29.17 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . B 2 -7.686 30.069 -3.608 1 26.36 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . B 2 -6.846 29.186 -5.626 1 29.2 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . B 2 -6.786 29.415 -7.099 1 27.75 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . B 2 -7.528 28.711 -8.007 1 24.9 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . B 2 -7.27 29.11 -9.29 1 25.37 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . B 2 -6.344 30.088 -9.184 1 26.28 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . B 2 -5.641 30.958 -10.143 1 25.9 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . B 2 -5.877 30.812 -11.461 1 25.5 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . B 2 -4.753 31.872 -9.661 1 25.01 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . B 2 -4.501 31.988 -8.341 1 29.6 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . B 2 -5.122 31.253 -7.373 1 27.14 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . B 2 -6.031 30.291 -7.757 1 24.82 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #