data_5ORN # _model_server_result.job_id 9ZIqA0zz3O75b06LV96Hdg _model_server_result.datetime_utc '2024-11-06 22:33:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5orn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5ORN # _exptl.entry_id 5ORN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ORN _cell.length_a 82.38 _cell.length_b 82.38 _cell.length_c 175.99 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ORN _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc3 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc6 C MG MG . A MG 402 1_555 F O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc7 C MG MG . A MG 402 1_555 F O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc8 D MG MG . A MG 403 1_555 F O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ORN _atom_sites.fract_transf_matrix[1][1] 0.012139 _atom_sites.fract_transf_matrix[1][2] 0.007008 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 A5E A 1 404 1 A5E FRG . F 5 HOH A 1 501 15 HOH HOH . F 5 HOH A 2 502 37 HOH HOH . F 5 HOH A 3 503 6 HOH HOH . F 5 HOH A 4 504 49 HOH HOH . F 5 HOH A 5 505 28 HOH HOH . F 5 HOH A 6 506 40 HOH HOH . F 5 HOH A 7 507 59 HOH HOH . F 5 HOH A 8 508 53 HOH HOH . F 5 HOH A 9 509 38 HOH HOH . F 5 HOH A 10 510 31 HOH HOH . F 5 HOH A 11 511 50 HOH HOH . F 5 HOH A 12 512 9 HOH HOH . F 5 HOH A 13 513 20 HOH HOH . F 5 HOH A 14 514 5 HOH HOH . F 5 HOH A 15 515 35 HOH HOH . F 5 HOH A 16 516 12 HOH HOH . F 5 HOH A 17 517 25 HOH HOH . F 5 HOH A 18 518 27 HOH HOH . F 5 HOH A 19 519 24 HOH HOH . F 5 HOH A 20 520 21 HOH HOH . F 5 HOH A 21 521 16 HOH HOH . F 5 HOH A 22 522 13 HOH HOH . F 5 HOH A 23 523 29 HOH HOH . F 5 HOH A 24 524 23 HOH HOH . F 5 HOH A 25 525 18 HOH HOH . F 5 HOH A 26 526 17 HOH HOH . F 5 HOH A 27 527 8 HOH HOH . F 5 HOH A 28 528 4 HOH HOH . F 5 HOH A 29 529 10 HOH HOH . F 5 HOH A 30 530 30 HOH HOH . F 5 HOH A 31 531 7 HOH HOH . F 5 HOH A 32 532 44 HOH HOH . F 5 HOH A 33 533 19 HOH HOH . F 5 HOH A 34 534 43 HOH HOH . F 5 HOH A 35 535 52 HOH HOH . F 5 HOH A 36 536 11 HOH HOH . F 5 HOH A 37 537 48 HOH HOH . F 5 HOH A 38 538 14 HOH HOH . F 5 HOH A 39 539 58 HOH HOH . F 5 HOH A 40 540 1 HOH HOH . F 5 HOH A 41 541 41 HOH HOH . F 5 HOH A 42 542 45 HOH HOH . F 5 HOH A 43 543 32 HOH HOH . F 5 HOH A 44 544 3 HOH HOH . F 5 HOH A 45 545 36 HOH HOH . F 5 HOH A 46 546 42 HOH HOH . F 5 HOH A 47 547 54 HOH HOH . F 5 HOH A 48 548 22 HOH HOH . F 5 HOH A 49 549 56 HOH HOH . F 5 HOH A 50 550 46 HOH HOH . F 5 HOH A 51 551 39 HOH HOH . F 5 HOH A 52 552 34 HOH HOH . F 5 HOH A 53 553 57 HOH HOH . F 5 HOH A 54 554 47 HOH HOH . F 5 HOH A 55 555 2 HOH HOH . F 5 HOH A 56 556 26 HOH HOH . F 5 HOH A 57 557 33 HOH HOH . F 5 HOH A 58 558 51 HOH HOH . F 5 HOH A 59 559 55 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -13.595 _atom_site.Cartn_y 27.171 _atom_site.Cartn_z -5.684 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #