data_5ORP
#
_model_server_result.job_id            YOA_Md4RlBucVmMVwGjC_g 
_model_server_result.datetime_utc      '2024-10-10 05:20:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5orp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    5ORP 
#
_exptl.entry_id    5ORP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              279.689 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[3-chloranyl-5-(trifluoromethyl)pyridin-2-yl]-1,4-diazepane 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ORP 
_cell.length_a            82.06 
_cell.length_b            82.06 
_cell.length_c            174.91 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ORP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc3 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? 
metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc6 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc7 C MG MG . A MG 402 1_555 F O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc8 C MG MG . A MG 402 1_555 F O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
#
_chem_comp.formula           'C11 H13 Cl F3 N3' 
_chem_comp.formula_weight    279.689 
_chem_comp.id                A5K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[3-chloranyl-5-(trifluoromethyl)pyridin-2-yl]-1,4-diazepane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C5 A5K sing 1 n n 
C6 N2 A5K sing 2 n n 
C5 C4 A5K sing 3 n n 
C4 N1 A5K sing 4 n n 
N2 C7 A5K sing 5 n n 
C7 C8 A5K sing 6 n n 
N1 C8 A5K sing 7 n n 
N1 C3 A5K sing 8 n n 
C3 N A5K doub 9 n y 
C3 C9 A5K sing 10 n y 
N C2 A5K sing 11 n y 
CL C9 A5K sing 12 n n 
C9 C10 A5K doub 13 n y 
C2 C1 A5K doub 14 n y 
C10 C1 A5K sing 15 n y 
C1 C A5K sing 16 n n 
F2 C A5K sing 17 n n 
C F A5K sing 18 n n 
C F1 A5K sing 19 n n 
C10 H1 A5K sing 20 n n 
C8 H2 A5K sing 21 n n 
C8 H3 A5K sing 22 n n 
C7 H4 A5K sing 23 n n 
C7 H5 A5K sing 24 n n 
C4 H6 A5K sing 25 n n 
C4 H7 A5K sing 26 n n 
C5 H8 A5K sing 27 n n 
C5 H9 A5K sing 28 n n 
C6 H10 A5K sing 29 n n 
C6 H11 A5K sing 30 n n 
C2 H12 A5K sing 31 n n 
N2 H13 A5K sing 32 n n 
#
_atom_sites.entry_id                     5ORP 
_atom_sites.fract_transf_matrix[1][1]    0.012186 
_atom_sites.fract_transf_matrix[1][2]    0.007036 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014071 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005717 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 1392 ADP ADP . 
C 3 MG A 1 402 1395 MG MG . 
D 3 MG A 1 403 1396 MG MG . 
E 4 A5K A 1 404 1 A5K FRG . 
F 5 HOH A 1 501 42 HOH HOH . 
F 5 HOH A 2 502 64 HOH HOH . 
F 5 HOH A 3 503 5 HOH HOH . 
F 5 HOH A 4 504 54 HOH HOH . 
F 5 HOH A 5 505 7 HOH HOH . 
F 5 HOH A 6 506 62 HOH HOH . 
F 5 HOH A 7 507 68 HOH HOH . 
F 5 HOH A 8 508 20 HOH HOH . 
F 5 HOH A 9 509 13 HOH HOH . 
F 5 HOH A 10 510 31 HOH HOH . 
F 5 HOH A 11 511 58 HOH HOH . 
F 5 HOH A 12 512 45 HOH HOH . 
F 5 HOH A 13 513 17 HOH HOH . 
F 5 HOH A 14 514 11 HOH HOH . 
F 5 HOH A 15 515 28 HOH HOH . 
F 5 HOH A 16 516 27 HOH HOH . 
F 5 HOH A 17 517 40 HOH HOH . 
F 5 HOH A 18 518 21 HOH HOH . 
F 5 HOH A 19 519 44 HOH HOH . 
F 5 HOH A 20 520 4 HOH HOH . 
F 5 HOH A 21 521 23 HOH HOH . 
F 5 HOH A 22 522 34 HOH HOH . 
F 5 HOH A 23 523 16 HOH HOH . 
F 5 HOH A 24 524 19 HOH HOH . 
F 5 HOH A 25 525 35 HOH HOH . 
F 5 HOH A 26 526 66 HOH HOH . 
F 5 HOH A 27 527 29 HOH HOH . 
F 5 HOH A 28 528 9 HOH HOH . 
F 5 HOH A 29 529 33 HOH HOH . 
F 5 HOH A 30 530 22 HOH HOH . 
F 5 HOH A 31 531 18 HOH HOH . 
F 5 HOH A 32 532 73 HOH HOH . 
F 5 HOH A 33 533 3 HOH HOH . 
F 5 HOH A 34 534 10 HOH HOH . 
F 5 HOH A 35 535 57 HOH HOH . 
F 5 HOH A 36 536 50 HOH HOH . 
F 5 HOH A 37 537 63 HOH HOH . 
F 5 HOH A 38 538 1 HOH HOH . 
F 5 HOH A 39 539 6 HOH HOH . 
F 5 HOH A 40 540 32 HOH HOH . 
F 5 HOH A 41 541 36 HOH HOH . 
F 5 HOH A 42 542 30 HOH HOH . 
F 5 HOH A 43 543 53 HOH HOH . 
F 5 HOH A 44 544 26 HOH HOH . 
F 5 HOH A 45 545 70 HOH HOH . 
F 5 HOH A 46 546 12 HOH HOH . 
F 5 HOH A 47 547 14 HOH HOH . 
F 5 HOH A 48 548 52 HOH HOH . 
F 5 HOH A 49 549 49 HOH HOH . 
F 5 HOH A 50 550 25 HOH HOH . 
F 5 HOH A 51 551 55 HOH HOH . 
F 5 HOH A 52 552 37 HOH HOH . 
F 5 HOH A 53 553 24 HOH HOH . 
F 5 HOH A 54 554 60 HOH HOH . 
F 5 HOH A 55 555 41 HOH HOH . 
F 5 HOH A 56 556 51 HOH HOH . 
F 5 HOH A 57 557 2 HOH HOH . 
F 5 HOH A 58 558 15 HOH HOH . 
F 5 HOH A 59 559 38 HOH HOH . 
F 5 HOH A 60 560 56 HOH HOH . 
F 5 HOH A 61 561 76 HOH HOH . 
F 5 HOH A 62 562 46 HOH HOH . 
F 5 HOH A 63 563 65 HOH HOH . 
F 5 HOH A 64 564 39 HOH HOH . 
F 5 HOH A 65 565 48 HOH HOH . 
F 5 HOH A 66 566 75 HOH HOH . 
F 5 HOH A 67 567 72 HOH HOH . 
F 5 HOH A 68 568 77 HOH HOH . 
F 5 HOH A 69 569 74 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A5K . . . E 4 0.023 29.225 -22.091 1 75.07 ? C10 A5K 404 A 1 
HETATM 2 C C9 A5K . . . E 4 0.186 30.22 -23.021 1 89.37 ? C9 A5K 404 A 1 
HETATM 3 C C8 A5K . . . E 4 1.642 32.656 -24.372 1 91.83 ? C8 A5K 404 A 1 
HETATM 4 C C7 A5K . . . E 4 0.657 33.473 -25.208 1 95.87 ? C7 A5K 404 A 1 
HETATM 5 C C4 A5K . . . E 4 1.716 30.879 -26.11 1 101.88 ? C4 A5K 404 A 1 
HETATM 6 C C5 A5K . . . E 4 0.351 30.754 -26.782 1 105.14 ? C5 A5K 404 A 1 
HETATM 7 C C6 A5K . . . E 4 -0.426 32.055 -26.878 1 106.69 ? C6 A5K 404 A 1 
HETATM 8 C C3 A5K . . . E 4 1.383 30.288 -23.765 1 89.73 ? C3 A5K 404 A 1 
HETATM 9 C C2 A5K . . . E 4 2.182 28.444 -22.648 1 81.7 ? C2 A5K 404 A 1 
HETATM 10 C C1 A5K . . . E 4 1.039 28.312 -21.885 1 79.03 ? C1 A5K 404 A 1 
HETATM 11 CL CL A5K . . . E 4 -1.1 31.352 -23.286 1 146.55 ? CL A5K 404 A 1 
HETATM 12 C C A5K . . . E 4 0.913 27.224 -20.879 1 78.29 ? C A5K 404 A 1 
HETATM 13 F F2 A5K . . . E 4 0.354 26.116 -21.383 1 86.32 ? F2 A5K 404 A 1 
HETATM 14 F F1 A5K . . . E 4 0.154 27.574 -19.829 1 90.3 ? F1 A5K 404 A 1 
HETATM 15 F F A5K . . . E 4 2.094 26.846 -20.375 1 76.88 ? F A5K 404 A 1 
HETATM 16 N N A5K . . . E 4 2.357 29.4 -23.573 1 87.66 ? N A5K 404 A 1 
HETATM 17 N N1 A5K . . . E 4 1.594 31.234 -24.7 1 97.75 ? N1 A5K 404 A 1 
HETATM 18 N N2 A5K . . . E 4 -0.548 32.733 -25.586 1 105.82 ? N2 A5K 404 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#