data_5ORR
#
_model_server_result.job_id            mVDXO6ICkkF3JyrluiT28A 
_model_server_result.datetime_utc      '2024-11-07 17:34:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5orr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5ORR 
#
_exptl.entry_id    5ORR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5ORR 
_cell.length_a            82.14 
_cell.length_b            82.14 
_cell.length_c            176.5 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ORR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc3 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc6 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc7 C MG MG . A MG 402 1_555 H O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc8 C MG MG . A MG 402 1_555 H O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc9 D MG MG . A MG 403 1_555 H O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc10 D MG MG . A MG 403 1_555 H O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 H O HOH . A HOH 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc12 D MG MG . A MG 403 1_555 H O HOH . A HOH 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 24 n n 
PB O2B ADP sing 25 n n 
PB O3B ADP sing 26 n n 
PB O3A ADP sing 27 n n 
O2B HOB2 ADP sing 28 n n 
O3B HOB3 ADP sing 29 n n 
PA O1A ADP doub 30 n n 
PA O2A ADP sing 31 n n 
PA O3A ADP sing 32 n n 
PA O5' ADP sing 33 n n 
O2A HOA2 ADP sing 34 n n 
O5' C5' ADP sing 35 n n 
C5' C4' ADP sing 36 n n 
C5' "H5'1" ADP sing 37 n n 
C5' "H5'2" ADP sing 38 n n 
C4' O4' ADP sing 39 n n 
C4' C3' ADP sing 40 n n 
C4' H4' ADP sing 41 n n 
O4' C1' ADP sing 42 n n 
C3' O3' ADP sing 43 n n 
C3' C2' ADP sing 44 n n 
C3' H3' ADP sing 45 n n 
O3' HO3' ADP sing 46 n n 
C2' O2' ADP sing 47 n n 
C2' C1' ADP sing 48 n n 
C2' H2' ADP sing 49 n n 
O2' HO2' ADP sing 50 n n 
C1' N9 ADP sing 51 n n 
C1' H1' ADP sing 52 n n 
N9 C8 ADP sing 53 n y 
N9 C4 ADP sing 54 n y 
C8 N7 ADP doub 55 n y 
C8 H8 ADP sing 56 n n 
N7 C5 ADP sing 57 n y 
C5 C6 ADP sing 58 n y 
C5 C4 ADP doub 59 n y 
C6 N6 ADP sing 60 n n 
C6 N1 ADP doub 61 n y 
N6 HN61 ADP sing 62 n n 
N6 HN62 ADP sing 63 n n 
N1 C2 ADP sing 64 n y 
C2 N3 ADP doub 65 n y 
C2 H2 ADP sing 66 n n 
N3 C4 ADP sing 67 n y 
#
_atom_sites.entry_id                     5ORR 
_atom_sites.fract_transf_matrix[1][1]    0.012174 
_atom_sites.fract_transf_matrix[1][2]    0.007029 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014058 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005666 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 1392 ADP ADP . 
C 3 MG A 1 402 1395 MG MG . 
D 3 MG A 1 403 1396 MG MG . 
E 4 A5Q A 1 404 1 A5Q FRG . 
F 5 CL A 1 405 1 CL CL . 
G 5 CL A 1 406 2 CL CL . 
H 6 HOH A 1 501 41 HOH HOH . 
H 6 HOH A 2 502 51 HOH HOH . 
H 6 HOH A 3 503 97 HOH HOH . 
H 6 HOH A 4 504 28 HOH HOH . 
H 6 HOH A 5 505 74 HOH HOH . 
H 6 HOH A 6 506 10 HOH HOH . 
H 6 HOH A 7 507 58 HOH HOH . 
H 6 HOH A 8 508 75 HOH HOH . 
H 6 HOH A 9 509 57 HOH HOH . 
H 6 HOH A 10 510 83 HOH HOH . 
H 6 HOH A 11 511 73 HOH HOH . 
H 6 HOH A 12 512 65 HOH HOH . 
H 6 HOH A 13 513 27 HOH HOH . 
H 6 HOH A 14 514 56 HOH HOH . 
H 6 HOH A 15 515 62 HOH HOH . 
H 6 HOH A 16 516 40 HOH HOH . 
H 6 HOH A 17 517 1 HOH HOH . 
H 6 HOH A 18 518 64 HOH HOH . 
H 6 HOH A 19 519 17 HOH HOH . 
H 6 HOH A 20 520 68 HOH HOH . 
H 6 HOH A 21 521 36 HOH HOH . 
H 6 HOH A 22 522 70 HOH HOH . 
H 6 HOH A 23 523 19 HOH HOH . 
H 6 HOH A 24 524 15 HOH HOH . 
H 6 HOH A 25 525 14 HOH HOH . 
H 6 HOH A 26 526 53 HOH HOH . 
H 6 HOH A 27 527 13 HOH HOH . 
H 6 HOH A 28 528 20 HOH HOH . 
H 6 HOH A 29 529 33 HOH HOH . 
H 6 HOH A 30 530 12 HOH HOH . 
H 6 HOH A 31 531 22 HOH HOH . 
H 6 HOH A 32 532 39 HOH HOH . 
H 6 HOH A 33 533 67 HOH HOH . 
H 6 HOH A 34 534 29 HOH HOH . 
H 6 HOH A 35 535 8 HOH HOH . 
H 6 HOH A 36 536 34 HOH HOH . 
H 6 HOH A 37 537 47 HOH HOH . 
H 6 HOH A 38 538 5 HOH HOH . 
H 6 HOH A 39 539 6 HOH HOH . 
H 6 HOH A 40 540 16 HOH HOH . 
H 6 HOH A 41 541 24 HOH HOH . 
H 6 HOH A 42 542 37 HOH HOH . 
H 6 HOH A 43 543 54 HOH HOH . 
H 6 HOH A 44 544 25 HOH HOH . 
H 6 HOH A 45 545 71 HOH HOH . 
H 6 HOH A 46 546 48 HOH HOH . 
H 6 HOH A 47 547 72 HOH HOH . 
H 6 HOH A 48 548 4 HOH HOH . 
H 6 HOH A 49 549 23 HOH HOH . 
H 6 HOH A 50 550 9 HOH HOH . 
H 6 HOH A 51 551 38 HOH HOH . 
H 6 HOH A 52 552 95 HOH HOH . 
H 6 HOH A 53 553 46 HOH HOH . 
H 6 HOH A 54 554 21 HOH HOH . 
H 6 HOH A 55 555 86 HOH HOH . 
H 6 HOH A 56 556 44 HOH HOH . 
H 6 HOH A 57 557 31 HOH HOH . 
H 6 HOH A 58 558 42 HOH HOH . 
H 6 HOH A 59 559 35 HOH HOH . 
H 6 HOH A 60 560 89 HOH HOH . 
H 6 HOH A 61 561 63 HOH HOH . 
H 6 HOH A 62 562 66 HOH HOH . 
H 6 HOH A 63 563 79 HOH HOH . 
H 6 HOH A 64 564 30 HOH HOH . 
H 6 HOH A 65 565 18 HOH HOH . 
H 6 HOH A 66 566 3 HOH HOH . 
H 6 HOH A 67 567 59 HOH HOH . 
H 6 HOH A 68 568 78 HOH HOH . 
H 6 HOH A 69 569 50 HOH HOH . 
H 6 HOH A 70 570 32 HOH HOH . 
H 6 HOH A 71 571 45 HOH HOH . 
H 6 HOH A 72 572 84 HOH HOH . 
H 6 HOH A 73 573 91 HOH HOH . 
H 6 HOH A 74 574 96 HOH HOH . 
H 6 HOH A 75 575 26 HOH HOH . 
H 6 HOH A 76 576 88 HOH HOH . 
H 6 HOH A 77 577 60 HOH HOH . 
H 6 HOH A 78 578 99 HOH HOH . 
H 6 HOH A 79 579 49 HOH HOH . 
H 6 HOH A 80 580 2 HOH HOH . 
H 6 HOH A 81 581 76 HOH HOH . 
H 6 HOH A 82 582 87 HOH HOH . 
H 6 HOH A 83 583 55 HOH HOH . 
H 6 HOH A 84 584 102 HOH HOH . 
H 6 HOH A 85 585 100 HOH HOH . 
H 6 HOH A 86 586 61 HOH HOH . 
H 6 HOH A 87 587 92 HOH HOH . 
H 6 HOH A 88 588 82 HOH HOH . 
H 6 HOH A 89 589 94 HOH HOH . 
H 6 HOH A 90 590 7 HOH HOH . 
H 6 HOH A 91 591 98 HOH HOH . 
H 6 HOH A 92 592 43 HOH HOH . 
H 6 HOH A 93 593 93 HOH HOH . 
H 6 HOH A 94 594 80 HOH HOH . 
H 6 HOH A 95 595 104 HOH HOH . 
H 6 HOH A 96 596 69 HOH HOH . 
H 6 HOH A 97 597 90 HOH HOH . 
H 6 HOH A 98 598 81 HOH HOH . 
H 6 HOH A 99 599 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 -12.253 24.131 -6.11 1 52.31 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 -12.862 23.978 -7.483 1 55.03 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 -11.759 22.835 -5.514 1 45.27 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 -13.05 24.995 -5.162 1 43.53 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 -10.877 26.42 -7.049 1 38.38 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 -10.693 26.282 -8.541 1 43.84 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 -12.03 27.218 -6.488 1 40.32 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 -10.896 24.963 -6.36 1 42.47 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 -9.527 27.014 -6.404 1 38.03 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 -9.328 26.86 -5 1 33.96 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 -8.536 28.027 -4.427 1 33.42 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 -7.253 28.141 -5.052 1 37.5 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 -9.234 29.356 -4.655 1 31 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 -10.102 29.684 -3.567 1 35.56 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 -8.085 30.333 -4.762 1 33.35 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 -7.745 30.795 -3.453 1 39.29 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 -6.933 29.511 -5.308 1 32.91 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 -6.88 29.708 -6.777 1 34.47 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 -7.583 28.989 -7.672 1 40.31 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 -7.333 29.399 -8.939 1 36.73 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 -6.447 30.409 -8.868 1 37.76 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 -5.761 31.29 -9.842 1 42.62 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 -5.985 31.162 -11.174 1 38.52 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 -4.909 32.221 -9.354 1 37.14 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 -4.685 32.351 -8.032 1 39.96 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 -5.273 31.585 -7.094 1 37.77 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 -6.15 30.612 -7.441 1 35.6 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           27 
#