data_5ORR # _model_server_result.job_id Heyysh0lAwb0JZrJmGsmBg _model_server_result.datetime_utc '2024-11-07 17:50:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5orr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5ORR # _exptl.entry_id 5ORR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ORR _cell.length_a 82.14 _cell.length_b 82.14 _cell.length_c 176.5 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ORR _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc3 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc6 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc7 C MG MG . A MG 402 1_555 H O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc8 C MG MG . A MG 402 1_555 H O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc9 D MG MG . A MG 403 1_555 H O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc10 D MG MG . A MG 403 1_555 H O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc11 D MG MG . A MG 403 1_555 H O HOH . A HOH 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc12 D MG MG . A MG 403 1_555 H O HOH . A HOH 594 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ORR _atom_sites.fract_transf_matrix[1][1] 0.012174 _atom_sites.fract_transf_matrix[1][2] 0.007029 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 A5Q A 1 404 1 A5Q FRG . F 5 CL A 1 405 1 CL CL . G 5 CL A 1 406 2 CL CL . H 6 HOH A 1 501 41 HOH HOH . H 6 HOH A 2 502 51 HOH HOH . H 6 HOH A 3 503 97 HOH HOH . H 6 HOH A 4 504 28 HOH HOH . H 6 HOH A 5 505 74 HOH HOH . H 6 HOH A 6 506 10 HOH HOH . H 6 HOH A 7 507 58 HOH HOH . H 6 HOH A 8 508 75 HOH HOH . H 6 HOH A 9 509 57 HOH HOH . H 6 HOH A 10 510 83 HOH HOH . H 6 HOH A 11 511 73 HOH HOH . H 6 HOH A 12 512 65 HOH HOH . H 6 HOH A 13 513 27 HOH HOH . H 6 HOH A 14 514 56 HOH HOH . H 6 HOH A 15 515 62 HOH HOH . H 6 HOH A 16 516 40 HOH HOH . H 6 HOH A 17 517 1 HOH HOH . H 6 HOH A 18 518 64 HOH HOH . H 6 HOH A 19 519 17 HOH HOH . H 6 HOH A 20 520 68 HOH HOH . H 6 HOH A 21 521 36 HOH HOH . H 6 HOH A 22 522 70 HOH HOH . H 6 HOH A 23 523 19 HOH HOH . H 6 HOH A 24 524 15 HOH HOH . H 6 HOH A 25 525 14 HOH HOH . H 6 HOH A 26 526 53 HOH HOH . H 6 HOH A 27 527 13 HOH HOH . H 6 HOH A 28 528 20 HOH HOH . H 6 HOH A 29 529 33 HOH HOH . H 6 HOH A 30 530 12 HOH HOH . H 6 HOH A 31 531 22 HOH HOH . H 6 HOH A 32 532 39 HOH HOH . H 6 HOH A 33 533 67 HOH HOH . H 6 HOH A 34 534 29 HOH HOH . H 6 HOH A 35 535 8 HOH HOH . H 6 HOH A 36 536 34 HOH HOH . H 6 HOH A 37 537 47 HOH HOH . H 6 HOH A 38 538 5 HOH HOH . H 6 HOH A 39 539 6 HOH HOH . H 6 HOH A 40 540 16 HOH HOH . H 6 HOH A 41 541 24 HOH HOH . H 6 HOH A 42 542 37 HOH HOH . H 6 HOH A 43 543 54 HOH HOH . H 6 HOH A 44 544 25 HOH HOH . H 6 HOH A 45 545 71 HOH HOH . H 6 HOH A 46 546 48 HOH HOH . H 6 HOH A 47 547 72 HOH HOH . H 6 HOH A 48 548 4 HOH HOH . H 6 HOH A 49 549 23 HOH HOH . H 6 HOH A 50 550 9 HOH HOH . H 6 HOH A 51 551 38 HOH HOH . H 6 HOH A 52 552 95 HOH HOH . H 6 HOH A 53 553 46 HOH HOH . H 6 HOH A 54 554 21 HOH HOH . H 6 HOH A 55 555 86 HOH HOH . H 6 HOH A 56 556 44 HOH HOH . H 6 HOH A 57 557 31 HOH HOH . H 6 HOH A 58 558 42 HOH HOH . H 6 HOH A 59 559 35 HOH HOH . H 6 HOH A 60 560 89 HOH HOH . H 6 HOH A 61 561 63 HOH HOH . H 6 HOH A 62 562 66 HOH HOH . H 6 HOH A 63 563 79 HOH HOH . H 6 HOH A 64 564 30 HOH HOH . H 6 HOH A 65 565 18 HOH HOH . H 6 HOH A 66 566 3 HOH HOH . H 6 HOH A 67 567 59 HOH HOH . H 6 HOH A 68 568 78 HOH HOH . H 6 HOH A 69 569 50 HOH HOH . H 6 HOH A 70 570 32 HOH HOH . H 6 HOH A 71 571 45 HOH HOH . H 6 HOH A 72 572 84 HOH HOH . H 6 HOH A 73 573 91 HOH HOH . H 6 HOH A 74 574 96 HOH HOH . H 6 HOH A 75 575 26 HOH HOH . H 6 HOH A 76 576 88 HOH HOH . H 6 HOH A 77 577 60 HOH HOH . H 6 HOH A 78 578 99 HOH HOH . H 6 HOH A 79 579 49 HOH HOH . H 6 HOH A 80 580 2 HOH HOH . H 6 HOH A 81 581 76 HOH HOH . H 6 HOH A 82 582 87 HOH HOH . H 6 HOH A 83 583 55 HOH HOH . H 6 HOH A 84 584 102 HOH HOH . H 6 HOH A 85 585 100 HOH HOH . H 6 HOH A 86 586 61 HOH HOH . H 6 HOH A 87 587 92 HOH HOH . H 6 HOH A 88 588 82 HOH HOH . H 6 HOH A 89 589 94 HOH HOH . H 6 HOH A 90 590 7 HOH HOH . H 6 HOH A 91 591 98 HOH HOH . H 6 HOH A 92 592 43 HOH HOH . H 6 HOH A 93 593 93 HOH HOH . H 6 HOH A 94 594 80 HOH HOH . H 6 HOH A 95 595 104 HOH HOH . H 6 HOH A 96 596 69 HOH HOH . H 6 HOH A 97 597 90 HOH HOH . H 6 HOH A 98 598 81 HOH HOH . H 6 HOH A 99 599 101 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -14.919 _atom_site.Cartn_y 23.245 _atom_site.Cartn_z -8.087 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #