data_5ORS # _model_server_result.job_id DOvPC7XndnlyicZsbrLcTA _model_server_result.datetime_utc '2024-10-10 05:20:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ors # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5ORS # _exptl.entry_id 5ORS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ORS _cell.length_a 82.23 _cell.length_b 82.23 _cell.length_c 176.01 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ORS _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc3 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc6 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc7 C MG MG . A MG 402 1_555 F O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc8 C MG MG . A MG 402 1_555 F O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc12 D MG MG . A MG 403 1_555 F O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 46 n n PB O2B ADP sing 47 n n PB O3B ADP sing 48 n n PB O3A ADP sing 49 n n O2B HOB2 ADP sing 50 n n O3B HOB3 ADP sing 51 n n PA O1A ADP doub 52 n n PA O2A ADP sing 53 n n PA O3A ADP sing 54 n n PA O5' ADP sing 55 n n O2A HOA2 ADP sing 56 n n O5' C5' ADP sing 57 n n C5' C4' ADP sing 58 n n C5' "H5'1" ADP sing 59 n n C5' "H5'2" ADP sing 60 n n C4' O4' ADP sing 61 n n C4' C3' ADP sing 62 n n C4' H4' ADP sing 63 n n O4' C1' ADP sing 64 n n C3' O3' ADP sing 65 n n C3' C2' ADP sing 66 n n C3' H3' ADP sing 67 n n O3' HO3' ADP sing 68 n n C2' O2' ADP sing 69 n n C2' C1' ADP sing 70 n n C2' H2' ADP sing 71 n n O2' HO2' ADP sing 72 n n C1' N9 ADP sing 73 n n C1' H1' ADP sing 74 n n N9 C8 ADP sing 75 n y N9 C4 ADP sing 76 n y C8 N7 ADP doub 77 n y C8 H8 ADP sing 78 n n N7 C5 ADP sing 79 n y C5 C6 ADP sing 80 n y C5 C4 ADP doub 81 n y C6 N6 ADP sing 82 n n C6 N1 ADP doub 83 n y N6 HN61 ADP sing 84 n n N6 HN62 ADP sing 85 n n N1 C2 ADP sing 86 n y C2 N3 ADP doub 87 n y C2 H2 ADP sing 88 n n N3 C4 ADP sing 89 n y # _atom_sites.entry_id 5ORS _atom_sites.fract_transf_matrix[1][1] 0.012161 _atom_sites.fract_transf_matrix[1][2] 0.007021 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014042 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 A5W A 1 404 1 A5W FRG . F 5 HOH A 1 501 80 HOH HOH . F 5 HOH A 2 502 6 HOH HOH . F 5 HOH A 3 503 65 HOH HOH . F 5 HOH A 4 504 48 HOH HOH . F 5 HOH A 5 505 100 HOH HOH . F 5 HOH A 6 506 124 HOH HOH . F 5 HOH A 7 507 105 HOH HOH . F 5 HOH A 8 508 9 HOH HOH . F 5 HOH A 9 509 18 HOH HOH . F 5 HOH A 10 510 30 HOH HOH . F 5 HOH A 11 511 37 HOH HOH . F 5 HOH A 12 512 15 HOH HOH . F 5 HOH A 13 513 22 HOH HOH . F 5 HOH A 14 514 113 HOH HOH . F 5 HOH A 15 515 51 HOH HOH . F 5 HOH A 16 516 12 HOH HOH . F 5 HOH A 17 517 31 HOH HOH . F 5 HOH A 18 518 85 HOH HOH . F 5 HOH A 19 519 2 HOH HOH . F 5 HOH A 20 520 41 HOH HOH . F 5 HOH A 21 521 72 HOH HOH . F 5 HOH A 22 522 17 HOH HOH . F 5 HOH A 23 523 23 HOH HOH . F 5 HOH A 24 524 28 HOH HOH . F 5 HOH A 25 525 55 HOH HOH . F 5 HOH A 26 526 64 HOH HOH . F 5 HOH A 27 527 112 HOH HOH . F 5 HOH A 28 528 5 HOH HOH . F 5 HOH A 29 529 16 HOH HOH . F 5 HOH A 30 530 92 HOH HOH . F 5 HOH A 31 531 61 HOH HOH . F 5 HOH A 32 532 27 HOH HOH . F 5 HOH A 33 533 98 HOH HOH . F 5 HOH A 34 534 96 HOH HOH . F 5 HOH A 35 535 107 HOH HOH . F 5 HOH A 36 536 7 HOH HOH . F 5 HOH A 37 537 25 HOH HOH . F 5 HOH A 38 538 1 HOH HOH . F 5 HOH A 39 539 104 HOH HOH . F 5 HOH A 40 540 14 HOH HOH . F 5 HOH A 41 541 87 HOH HOH . F 5 HOH A 42 542 38 HOH HOH . F 5 HOH A 43 543 126 HOH HOH . F 5 HOH A 44 544 44 HOH HOH . F 5 HOH A 45 545 86 HOH HOH . F 5 HOH A 46 546 66 HOH HOH . F 5 HOH A 47 547 63 HOH HOH . F 5 HOH A 48 548 24 HOH HOH . F 5 HOH A 49 549 91 HOH HOH . F 5 HOH A 50 550 32 HOH HOH . F 5 HOH A 51 551 42 HOH HOH . F 5 HOH A 52 552 79 HOH HOH . F 5 HOH A 53 553 73 HOH HOH . F 5 HOH A 54 554 43 HOH HOH . F 5 HOH A 55 555 39 HOH HOH . F 5 HOH A 56 556 13 HOH HOH . F 5 HOH A 57 557 60 HOH HOH . F 5 HOH A 58 558 34 HOH HOH . F 5 HOH A 59 559 20 HOH HOH . F 5 HOH A 60 560 33 HOH HOH . F 5 HOH A 61 561 26 HOH HOH . F 5 HOH A 62 562 122 HOH HOH . F 5 HOH A 63 563 78 HOH HOH . F 5 HOH A 64 564 90 HOH HOH . F 5 HOH A 65 565 77 HOH HOH . F 5 HOH A 66 566 10 HOH HOH . F 5 HOH A 67 567 97 HOH HOH . F 5 HOH A 68 568 36 HOH HOH . F 5 HOH A 69 569 62 HOH HOH . F 5 HOH A 70 570 129 HOH HOH . F 5 HOH A 71 571 4 HOH HOH . F 5 HOH A 72 572 47 HOH HOH . F 5 HOH A 73 573 75 HOH HOH . F 5 HOH A 74 574 121 HOH HOH . F 5 HOH A 75 575 40 HOH HOH . F 5 HOH A 76 576 11 HOH HOH . F 5 HOH A 77 577 19 HOH HOH . F 5 HOH A 78 578 56 HOH HOH . F 5 HOH A 79 579 131 HOH HOH . F 5 HOH A 80 580 119 HOH HOH . F 5 HOH A 81 581 128 HOH HOH . F 5 HOH A 82 582 89 HOH HOH . F 5 HOH A 83 583 81 HOH HOH . F 5 HOH A 84 584 74 HOH HOH . F 5 HOH A 85 585 71 HOH HOH . F 5 HOH A 86 586 53 HOH HOH . F 5 HOH A 87 587 106 HOH HOH . F 5 HOH A 88 588 3 HOH HOH . F 5 HOH A 89 589 94 HOH HOH . F 5 HOH A 90 590 114 HOH HOH . F 5 HOH A 91 591 29 HOH HOH . F 5 HOH A 92 592 70 HOH HOH . F 5 HOH A 93 593 82 HOH HOH . F 5 HOH A 94 594 35 HOH HOH . F 5 HOH A 95 595 52 HOH HOH . F 5 HOH A 96 596 45 HOH HOH . F 5 HOH A 97 597 76 HOH HOH . F 5 HOH A 98 598 46 HOH HOH . F 5 HOH A 99 599 21 HOH HOH . F 5 HOH A 100 600 115 HOH HOH . F 5 HOH A 101 601 50 HOH HOH . F 5 HOH A 102 602 69 HOH HOH . F 5 HOH A 103 603 67 HOH HOH . F 5 HOH A 104 604 58 HOH HOH . F 5 HOH A 105 605 125 HOH HOH . F 5 HOH A 106 606 54 HOH HOH . F 5 HOH A 107 607 8 HOH HOH . F 5 HOH A 108 608 68 HOH HOH . F 5 HOH A 109 609 83 HOH HOH . F 5 HOH A 110 610 118 HOH HOH . F 5 HOH A 111 611 108 HOH HOH . F 5 HOH A 112 612 93 HOH HOH . F 5 HOH A 113 613 49 HOH HOH . F 5 HOH A 114 614 95 HOH HOH . F 5 HOH A 115 615 130 HOH HOH . F 5 HOH A 116 616 103 HOH HOH . F 5 HOH A 117 617 127 HOH HOH . F 5 HOH A 118 618 110 HOH HOH . F 5 HOH A 119 619 109 HOH HOH . F 5 HOH A 120 620 99 HOH HOH . F 5 HOH A 121 621 116 HOH HOH . F 5 HOH A 122 622 123 HOH HOH . F 5 HOH A 123 623 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -12.405 24.146 -5.99 1 34.85 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . B 2 -12.98 23.683 -7.295 1 36.68 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . B 2 -11.905 22.964 -5.204 1 42.19 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . B 2 -13.221 25.148 -5.209 1 35.96 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . B 2 -10.986 26.454 -7.063 1 28.95 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . B 2 -10.73 26.428 -8.546 1 38.1 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . B 2 -12.07 27.363 -6.527 1 38.49 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . B 2 -11.09 24.982 -6.424 1 37.78 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . B 2 -9.578 26.962 -6.428 1 38.1 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . B 2 -9.368 26.853 -5.007 1 37.95 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . B 2 -8.604 28.059 -4.43 1 34.28 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . B 2 -7.314 28.217 -5.03 1 32.81 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . B 2 -9.322 29.374 -4.675 1 33.61 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . B 2 -10.306 29.645 -3.665 1 34.68 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . B 2 -8.179 30.37 -4.688 1 36.4 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . B 2 -7.764 30.603 -3.342 1 32.46 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . B 2 -7.028 29.595 -5.298 1 33.43 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . B 2 -6.972 29.763 -6.765 1 32.74 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . B 2 -7.669 29.013 -7.645 1 33.78 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . B 2 -7.416 29.395 -8.911 1 30.72 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . B 2 -6.527 30.415 -8.865 1 31.85 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . B 2 -5.835 31.252 -9.868 1 31.88 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . B 2 -6.063 31.073 -11.209 1 33.4 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . B 2 -4.991 32.207 -9.394 1 31.55 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . B 2 -4.773 32.382 -8.067 1 33.81 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . B 2 -5.364 31.642 -7.099 1 33.41 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . B 2 -6.238 30.656 -7.439 1 31.38 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #