data_5ORT # _model_server_result.job_id 2ktd-CTCJKhdSfjqrhtyxA _model_server_result.datetime_utc '2024-11-07 18:59:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ort # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 5ORT # _exptl.entry_id 5ORT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.101 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[3-[2,6-bis(chloranyl)phenyl]-5-methyl-1,2-oxazol-4-yl]methanol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ORT _cell.length_a 82.44 _cell.length_b 82.44 _cell.length_c 176.18 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ORT _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc3 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc7 C MG MG . A MG 402 1_555 H O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc8 C MG MG . A MG 402 1_555 H O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc9 D MG MG . A MG 403 1_555 H O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc10 D MG MG . A MG 403 1_555 H O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? # _chem_comp.formula 'C11 H9 Cl2 N O2' _chem_comp.formula_weight 258.101 _chem_comp.id A5Z _chem_comp.mon_nstd_flag . _chem_comp.name '[3-[2,6-bis(chloranyl)phenyl]-5-methyl-1,2-oxazol-4-yl]methanol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C4 A5Z sing 1 n n C C1 A5Z sing 2 n n C4 C3 A5Z sing 3 n n C1 C3 A5Z doub 4 n y C1 O A5Z sing 5 n y C3 C2 A5Z sing 6 n y CL1 C10 A5Z sing 7 n n O N A5Z sing 8 n y C2 N A5Z doub 9 n y C2 C5 A5Z sing 10 n n C10 C5 A5Z doub 11 n y C10 C9 A5Z sing 12 n y C5 C6 A5Z sing 13 n y C9 C8 A5Z doub 14 n y C6 CL A5Z sing 15 n n C6 C7 A5Z doub 16 n y C8 C7 A5Z sing 17 n y C9 H1 A5Z sing 18 n n C8 H2 A5Z sing 19 n n C7 H3 A5Z sing 20 n n C4 H4 A5Z sing 21 n n C4 H5 A5Z sing 22 n n O1 H6 A5Z sing 23 n n C H7 A5Z sing 24 n n C H8 A5Z sing 25 n n C H9 A5Z sing 26 n n # _atom_sites.entry_id 5ORT _atom_sites.fract_transf_matrix[1][1] 0.01213 _atom_sites.fract_transf_matrix[1][2] 0.007003 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005676 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 CL A 1 404 1399 CL CL . F 4 CL A 1 405 1400 CL CL . G 5 A5Z A 1 406 1 A5Z FRG . H 6 HOH A 1 501 5 HOH HOH . H 6 HOH A 2 502 46 HOH HOH . H 6 HOH A 3 503 12 HOH HOH . H 6 HOH A 4 504 4 HOH HOH . H 6 HOH A 5 505 17 HOH HOH . H 6 HOH A 6 506 8 HOH HOH . H 6 HOH A 7 507 3 HOH HOH . H 6 HOH A 8 508 27 HOH HOH . H 6 HOH A 9 509 22 HOH HOH . H 6 HOH A 10 510 28 HOH HOH . H 6 HOH A 11 511 20 HOH HOH . H 6 HOH A 12 512 45 HOH HOH . H 6 HOH A 13 513 23 HOH HOH . H 6 HOH A 14 514 38 HOH HOH . H 6 HOH A 15 515 7 HOH HOH . H 6 HOH A 16 516 10 HOH HOH . H 6 HOH A 17 517 13 HOH HOH . H 6 HOH A 18 518 11 HOH HOH . H 6 HOH A 19 519 26 HOH HOH . H 6 HOH A 20 520 35 HOH HOH . H 6 HOH A 21 521 39 HOH HOH . H 6 HOH A 22 522 16 HOH HOH . H 6 HOH A 23 523 9 HOH HOH . H 6 HOH A 24 524 14 HOH HOH . H 6 HOH A 25 525 40 HOH HOH . H 6 HOH A 26 526 24 HOH HOH . H 6 HOH A 27 527 29 HOH HOH . H 6 HOH A 28 528 31 HOH HOH . H 6 HOH A 29 529 33 HOH HOH . H 6 HOH A 30 530 2 HOH HOH . H 6 HOH A 31 531 6 HOH HOH . H 6 HOH A 32 532 15 HOH HOH . H 6 HOH A 33 533 44 HOH HOH . H 6 HOH A 34 534 32 HOH HOH . H 6 HOH A 35 535 47 HOH HOH . H 6 HOH A 36 536 25 HOH HOH . H 6 HOH A 37 537 19 HOH HOH . H 6 HOH A 38 538 30 HOH HOH . H 6 HOH A 39 539 41 HOH HOH . H 6 HOH A 40 540 21 HOH HOH . H 6 HOH A 41 541 43 HOH HOH . H 6 HOH A 42 542 42 HOH HOH . H 6 HOH A 43 543 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A5Z . . . G 5 -10.463 12.954 -17.758 1 63.08 ? C10 A5Z 406 A 1 HETATM 2 C C9 A5Z . . . G 5 -10.225 11.79 -17.053 1 66.11 ? C9 A5Z 406 A 1 HETATM 3 C C8 A5Z . . . G 5 -11.119 11.367 -16.104 1 66.4 ? C8 A5Z 406 A 1 HETATM 4 C C7 A5Z . . . G 5 -12.252 12.097 -15.839 1 60.96 ? C7 A5Z 406 A 1 HETATM 5 C C4 A5Z . . . G 5 -11.773 14.329 -20.771 1 81.91 ? C4 A5Z 406 A 1 HETATM 6 C C5 A5Z . . . G 5 -11.598 13.72 -17.495 1 67.14 ? C5 A5Z 406 A 1 HETATM 7 C C6 A5Z . . . G 5 -12.481 13.277 -16.522 1 67.35 ? C6 A5Z 406 A 1 HETATM 8 C C3 A5Z . . . G 5 -11.942 15.253 -19.615 1 75.83 ? C3 A5Z 406 A 1 HETATM 9 C C2 A5Z . . . G 5 -11.875 14.98 -18.223 1 72.53 ? C2 A5Z 406 A 1 HETATM 10 C C1 A5Z . . . G 5 -12.242 16.562 -19.672 1 70.8 ? C1 A5Z 406 A 1 HETATM 11 CL CL1 A5Z . . . G 5 -9.318 13.491 -18.933 1 76.17 ? CL1 A5Z 406 A 1 HETATM 12 CL CL A5Z . . . G 5 -13.913 14.188 -16.191 1 69.32 ? CL A5Z 406 A 1 HETATM 13 N N A5Z . . . G 5 -12.122 16.065 -17.522 1 69.98 ? N A5Z 406 A 1 HETATM 14 O O A5Z . . . G 5 -12.338 17.063 -18.412 1 66.59 ? O A5Z 406 A 1 HETATM 15 O O1 A5Z . . . G 5 -13.027 13.744 -21.113 1 76.43 ? O1 A5Z 406 A 1 HETATM 16 C C A5Z . . . G 5 -12.469 17.521 -20.776 1 71.48 ? C A5Z 406 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #