data_5ORW # _model_server_result.job_id -Tx5y5-D-ejnRFMDhuLMSg _model_server_result.datetime_utc '2024-11-26 10:50:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5orw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5ORW # _exptl.entry_id 5ORW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 269.335 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(4-fluoranylphenoxy)-1-thiomorpholin-4-yl-propan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ORW _cell.length_a 82.51 _cell.length_b 82.51 _cell.length_c 175.39 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ORW _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc3 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc6 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc7 C MG MG . A MG 402 1_555 F O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc8 C MG MG . A MG 402 1_555 F O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'C13 H16 F N O2 S' _chem_comp.formula_weight 269.335 _chem_comp.id A6E _chem_comp.mon_nstd_flag . _chem_comp.name 3-(4-fluoranylphenoxy)-1-thiomorpholin-4-yl-propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 A6E doub 1 n y C12 C A6E sing 2 n y C11 C3 A6E sing 3 n y F C A6E sing 4 n n C C1 A6E doub 5 n y C4 C5 A6E sing 6 n n C4 O A6E sing 7 n n C3 O A6E sing 8 n n C3 C2 A6E doub 9 n y C5 C6 A6E sing 10 n n C1 C2 A6E sing 11 n y C6 O1 A6E doub 12 n n C6 N A6E sing 13 n n C10 N A6E sing 14 n n C10 C9 A6E sing 15 n n N C7 A6E sing 16 n n C9 S A6E sing 17 n n C7 C8 A6E sing 18 n n S C8 A6E sing 19 n n C12 H1 A6E sing 20 n n C11 H2 A6E sing 21 n n C10 H3 A6E sing 22 n n C10 H4 A6E sing 23 n n C9 H5 A6E sing 24 n n C9 H6 A6E sing 25 n n C8 H7 A6E sing 26 n n C8 H8 A6E sing 27 n n C7 H9 A6E sing 28 n n C7 H10 A6E sing 29 n n C4 H11 A6E sing 30 n n C4 H12 A6E sing 31 n n C5 H13 A6E sing 32 n n C5 H14 A6E sing 33 n n C2 H15 A6E sing 34 n n C1 H16 A6E sing 35 n n # _atom_sites.entry_id 5ORW _atom_sites.fract_transf_matrix[1][1] 0.01212 _atom_sites.fract_transf_matrix[1][2] 0.006997 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 A6E A 1 404 1 A6E FRG . F 5 HOH A 1 501 5 HOH HOH . F 5 HOH A 2 502 37 HOH HOH . F 5 HOH A 3 503 46 HOH HOH . F 5 HOH A 4 504 73 HOH HOH . F 5 HOH A 5 505 57 HOH HOH . F 5 HOH A 6 506 29 HOH HOH . F 5 HOH A 7 507 64 HOH HOH . F 5 HOH A 8 508 16 HOH HOH . F 5 HOH A 9 509 58 HOH HOH . F 5 HOH A 10 510 8 HOH HOH . F 5 HOH A 11 511 24 HOH HOH . F 5 HOH A 12 512 45 HOH HOH . F 5 HOH A 13 513 22 HOH HOH . F 5 HOH A 14 514 49 HOH HOH . F 5 HOH A 15 515 33 HOH HOH . F 5 HOH A 16 516 43 HOH HOH . F 5 HOH A 17 517 54 HOH HOH . F 5 HOH A 18 518 13 HOH HOH . F 5 HOH A 19 519 32 HOH HOH . F 5 HOH A 20 520 47 HOH HOH . F 5 HOH A 21 521 78 HOH HOH . F 5 HOH A 22 522 23 HOH HOH . F 5 HOH A 23 523 17 HOH HOH . F 5 HOH A 24 524 30 HOH HOH . F 5 HOH A 25 525 65 HOH HOH . F 5 HOH A 26 526 18 HOH HOH . F 5 HOH A 27 527 10 HOH HOH . F 5 HOH A 28 528 52 HOH HOH . F 5 HOH A 29 529 11 HOH HOH . F 5 HOH A 30 530 4 HOH HOH . F 5 HOH A 31 531 28 HOH HOH . F 5 HOH A 32 532 9 HOH HOH . F 5 HOH A 33 533 59 HOH HOH . F 5 HOH A 34 534 36 HOH HOH . F 5 HOH A 35 535 21 HOH HOH . F 5 HOH A 36 536 25 HOH HOH . F 5 HOH A 37 537 42 HOH HOH . F 5 HOH A 38 538 40 HOH HOH . F 5 HOH A 39 539 48 HOH HOH . F 5 HOH A 40 540 12 HOH HOH . F 5 HOH A 41 541 35 HOH HOH . F 5 HOH A 42 542 53 HOH HOH . F 5 HOH A 43 543 20 HOH HOH . F 5 HOH A 44 544 56 HOH HOH . F 5 HOH A 45 545 51 HOH HOH . F 5 HOH A 46 546 1 HOH HOH . F 5 HOH A 47 547 31 HOH HOH . F 5 HOH A 48 548 55 HOH HOH . F 5 HOH A 49 549 69 HOH HOH . F 5 HOH A 50 550 79 HOH HOH . F 5 HOH A 51 551 67 HOH HOH . F 5 HOH A 52 552 14 HOH HOH . F 5 HOH A 53 553 6 HOH HOH . F 5 HOH A 54 554 38 HOH HOH . F 5 HOH A 55 555 19 HOH HOH . F 5 HOH A 56 556 34 HOH HOH . F 5 HOH A 57 557 2 HOH HOH . F 5 HOH A 58 558 15 HOH HOH . F 5 HOH A 59 559 50 HOH HOH . F 5 HOH A 60 560 26 HOH HOH . F 5 HOH A 61 561 66 HOH HOH . F 5 HOH A 62 562 80 HOH HOH . F 5 HOH A 63 563 62 HOH HOH . F 5 HOH A 64 564 27 HOH HOH . F 5 HOH A 65 565 3 HOH HOH . F 5 HOH A 66 566 7 HOH HOH . F 5 HOH A 67 567 77 HOH HOH . F 5 HOH A 68 568 75 HOH HOH . F 5 HOH A 69 569 60 HOH HOH . F 5 HOH A 70 570 41 HOH HOH . F 5 HOH A 71 571 84 HOH HOH . F 5 HOH A 72 572 44 HOH HOH . F 5 HOH A 73 573 87 HOH HOH . F 5 HOH A 74 574 61 HOH HOH . F 5 HOH A 75 575 63 HOH HOH . F 5 HOH A 76 576 86 HOH HOH . F 5 HOH A 77 577 83 HOH HOH . F 5 HOH A 78 578 39 HOH HOH . F 5 HOH A 79 579 76 HOH HOH . F 5 HOH A 80 580 88 HOH HOH . F 5 HOH A 81 581 81 HOH HOH . F 5 HOH A 82 582 82 HOH HOH . F 5 HOH A 83 583 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 A6E . . . E 4 -12.035 15.528 -20.194 1 73.94 ? C12 A6E 404 A 1 HETATM 2 C C11 A6E . . . E 4 -11.117 14.523 -19.948 1 79.9 ? C11 A6E 404 A 1 HETATM 3 C C10 A6E . . . E 4 -11.794 12.93 -16.727 1 87.12 ? C10 A6E 404 A 1 HETATM 4 C C9 A6E . . . E 4 -13.129 12.798 -16.035 1 77.57 ? C9 A6E 404 A 1 HETATM 5 C C8 A6E . . . E 4 -11.84 11.48 -14.121 1 73.84 ? C8 A6E 404 A 1 HETATM 6 C C7 A6E . . . E 4 -10.589 11.685 -14.945 1 81.34 ? C7 A6E 404 A 1 HETATM 7 C C4 A6E . . . E 4 -9.341 12.373 -19.328 1 84.64 ? C4 A6E 404 A 1 HETATM 8 C C5 A6E . . . E 4 -10.485 11.521 -18.761 1 88.5 ? C5 A6E 404 A 1 HETATM 9 C C6 A6E . . . E 4 -10.254 11.121 -17.337 1 91.12 ? C6 A6E 404 A 1 HETATM 10 C C3 A6E . . . E 4 -10.255 14.625 -18.878 1 80.65 ? C3 A6E 404 A 1 HETATM 11 C C2 A6E . . . E 4 -10.3 15.724 -18.049 1 78.73 ? C2 A6E 404 A 1 HETATM 12 C C1 A6E . . . E 4 -11.217 16.734 -18.288 1 73.71 ? C1 A6E 404 A 1 HETATM 13 O O1 A6E . . . E 4 -9.476 10.205 -17.045 1 96.38 ? O1 A6E 404 A 1 HETATM 14 N N A6E . . . E 4 -10.874 11.834 -16.376 1 89.82 ? N A6E 404 A 1 HETATM 15 S S A6E . . . E 4 -12.97 12.871 -14.249 1 75.17 ? S A6E 404 A 1 HETATM 16 O O A6E . . . E 4 -9.309 13.591 -18.569 1 79.29 ? O A6E 404 A 1 HETATM 17 C C A6E . . . E 4 -12.056 16.604 -19.357 1 75.5 ? C A6E 404 A 1 HETATM 18 F F A6E . . . E 4 -12.947 17.588 -19.596 1 76.83 ? F A6E 404 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 18 #