data_5ORY # _model_server_result.job_id ByWFlADIjUZjQBbbI0RVzg _model_server_result.datetime_utc '2024-11-07 18:49:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ory # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5ORY # _exptl.entry_id 5ORY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ORY _cell.length_a 82.14 _cell.length_b 82.14 _cell.length_c 176.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ORY _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc3 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc4 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc5 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc6 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc7 C MG MG . A MG 402 1_555 I O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc8 C MG MG . A MG 402 1_555 I O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc9 D MG MG . A MG 403 1_555 I O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc10 D MG MG . A MG 403 1_555 I O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc11 D MG MG . A MG 403 1_555 I O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc12 D MG MG . A MG 403 1_555 I O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ORY _atom_sites.fract_transf_matrix[1][1] 0.012174 _atom_sites.fract_transf_matrix[1][2] 0.007029 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 CL A 1 404 1397 CL CL . F 4 CL A 1 405 1398 CL CL . G 5 AY4 A 1 406 1 AY4 FRG . H 4 CL A 1 407 1 CL CL . I 6 HOH A 1 501 5 HOH HOH . I 6 HOH A 2 502 2058 HOH HOH . I 6 HOH A 3 503 2007 HOH HOH . I 6 HOH A 4 504 2036 HOH HOH . I 6 HOH A 5 505 2042 HOH HOH . I 6 HOH A 6 506 2011 HOH HOH . I 6 HOH A 7 507 2029 HOH HOH . I 6 HOH A 8 508 2016 HOH HOH . I 6 HOH A 9 509 2050 HOH HOH . I 6 HOH A 10 510 2018 HOH HOH . I 6 HOH A 11 511 2046 HOH HOH . I 6 HOH A 12 512 2014 HOH HOH . I 6 HOH A 13 513 2003 HOH HOH . I 6 HOH A 14 514 2047 HOH HOH . I 6 HOH A 15 515 21 HOH HOH . I 6 HOH A 16 516 2019 HOH HOH . I 6 HOH A 17 517 2054 HOH HOH . I 6 HOH A 18 518 2038 HOH HOH . I 6 HOH A 19 519 2023 HOH HOH . I 6 HOH A 20 520 2057 HOH HOH . I 6 HOH A 21 521 2034 HOH HOH . I 6 HOH A 22 522 2068 HOH HOH . I 6 HOH A 23 523 2017 HOH HOH . I 6 HOH A 24 524 2013 HOH HOH . I 6 HOH A 25 525 19 HOH HOH . I 6 HOH A 26 526 2032 HOH HOH . I 6 HOH A 27 527 2012 HOH HOH . I 6 HOH A 28 528 2039 HOH HOH . I 6 HOH A 29 529 2052 HOH HOH . I 6 HOH A 30 530 2048 HOH HOH . I 6 HOH A 31 531 2033 HOH HOH . I 6 HOH A 32 532 2067 HOH HOH . I 6 HOH A 33 533 2006 HOH HOH . I 6 HOH A 34 534 2040 HOH HOH . I 6 HOH A 35 535 2051 HOH HOH . I 6 HOH A 36 536 2026 HOH HOH . I 6 HOH A 37 537 2059 HOH HOH . I 6 HOH A 38 538 15 HOH HOH . I 6 HOH A 39 539 2030 HOH HOH . I 6 HOH A 40 540 2028 HOH HOH . I 6 HOH A 41 541 25 HOH HOH . I 6 HOH A 42 542 18 HOH HOH . I 6 HOH A 43 543 2035 HOH HOH . I 6 HOH A 44 544 2055 HOH HOH . I 6 HOH A 45 545 2041 HOH HOH . I 6 HOH A 46 546 2045 HOH HOH . I 6 HOH A 47 547 2064 HOH HOH . I 6 HOH A 48 548 2024 HOH HOH . I 6 HOH A 49 549 2004 HOH HOH . I 6 HOH A 50 550 2005 HOH HOH . I 6 HOH A 51 551 2061 HOH HOH . I 6 HOH A 52 552 22 HOH HOH . I 6 HOH A 53 553 2031 HOH HOH . I 6 HOH A 54 554 2010 HOH HOH . I 6 HOH A 55 555 24 HOH HOH . I 6 HOH A 56 556 2060 HOH HOH . I 6 HOH A 57 557 17 HOH HOH . I 6 HOH A 58 558 11 HOH HOH . I 6 HOH A 59 559 2 HOH HOH . I 6 HOH A 60 560 23 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -13.878 _atom_site.Cartn_y 27.082 _atom_site.Cartn_z -5.525 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #