data_5OS1 # _model_server_result.job_id U4jGdvZL8l9OgHJhuLsHUw _model_server_result.datetime_utc '2024-11-22 12:36:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5os1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5OS1 # _exptl.entry_id 5OS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OS1 _cell.length_a 82.06 _cell.length_b 82.06 _cell.length_c 175.69 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc6 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc7 C MG MG . A MG 402 1_555 I O HOH . A HOH 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc8 C MG MG . A MG 402 1_555 I O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc9 D MG MG . A MG 403 1_555 I O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc10 D MG MG . A MG 403 1_555 I O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc11 D MG MG . A MG 403 1_555 I O HOH . A HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc12 D MG MG . A MG 403 1_555 I O HOH . A HOH 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 26 n n PB O2B ADP sing 27 n n PB O3B ADP sing 28 n n PB O3A ADP sing 29 n n O2B HOB2 ADP sing 30 n n O3B HOB3 ADP sing 31 n n PA O1A ADP doub 32 n n PA O2A ADP sing 33 n n PA O3A ADP sing 34 n n PA O5' ADP sing 35 n n O2A HOA2 ADP sing 36 n n O5' C5' ADP sing 37 n n C5' C4' ADP sing 38 n n C5' "H5'1" ADP sing 39 n n C5' "H5'2" ADP sing 40 n n C4' O4' ADP sing 41 n n C4' C3' ADP sing 42 n n C4' H4' ADP sing 43 n n O4' C1' ADP sing 44 n n C3' O3' ADP sing 45 n n C3' C2' ADP sing 46 n n C3' H3' ADP sing 47 n n O3' HO3' ADP sing 48 n n C2' O2' ADP sing 49 n n C2' C1' ADP sing 50 n n C2' H2' ADP sing 51 n n O2' HO2' ADP sing 52 n n C1' N9 ADP sing 53 n n C1' H1' ADP sing 54 n n N9 C8 ADP sing 55 n y N9 C4 ADP sing 56 n y C8 N7 ADP doub 57 n y C8 H8 ADP sing 58 n n N7 C5 ADP sing 59 n y C5 C6 ADP sing 60 n y C5 C4 ADP doub 61 n y C6 N6 ADP sing 62 n n C6 N1 ADP doub 63 n y N6 HN61 ADP sing 64 n n N6 HN62 ADP sing 65 n n N1 C2 ADP sing 66 n y C2 N3 ADP doub 67 n y C2 H2 ADP sing 68 n n N3 C4 ADP sing 69 n y # _atom_sites.entry_id 5OS1 _atom_sites.fract_transf_matrix[1][1] 0.012186 _atom_sites.fract_transf_matrix[1][2] 0.007036 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 CL A 1 404 1397 CL CL . F 4 CL A 1 405 1398 CL CL . G 4 CL A 1 406 1399 CL CL . H 5 A7H A 1 407 1 A7H FRG . I 6 HOH A 1 501 16 HOH HOH . I 6 HOH A 2 502 28 HOH HOH . I 6 HOH A 3 503 36 HOH HOH . I 6 HOH A 4 504 2058 HOH HOH . I 6 HOH A 5 505 10 HOH HOH . I 6 HOH A 6 506 44 HOH HOH . I 6 HOH A 7 507 2007 HOH HOH . I 6 HOH A 8 508 45 HOH HOH . I 6 HOH A 9 509 2003 HOH HOH . I 6 HOH A 10 510 2014 HOH HOH . I 6 HOH A 11 511 2034 HOH HOH . I 6 HOH A 12 512 2036 HOH HOH . I 6 HOH A 13 513 2037 HOH HOH . I 6 HOH A 14 514 2049 HOH HOH . I 6 HOH A 15 515 2 HOH HOH . I 6 HOH A 16 516 2023 HOH HOH . I 6 HOH A 17 517 27 HOH HOH . I 6 HOH A 18 518 2016 HOH HOH . I 6 HOH A 19 519 2067 HOH HOH . I 6 HOH A 20 520 12 HOH HOH . I 6 HOH A 21 521 2029 HOH HOH . I 6 HOH A 22 522 2047 HOH HOH . I 6 HOH A 23 523 2008 HOH HOH . I 6 HOH A 24 524 2028 HOH HOH . I 6 HOH A 25 525 25 HOH HOH . I 6 HOH A 26 526 2019 HOH HOH . I 6 HOH A 27 527 2002 HOH HOH . I 6 HOH A 28 528 2009 HOH HOH . I 6 HOH A 29 529 8 HOH HOH . I 6 HOH A 30 530 48 HOH HOH . I 6 HOH A 31 531 2011 HOH HOH . I 6 HOH A 32 532 2046 HOH HOH . I 6 HOH A 33 533 2018 HOH HOH . I 6 HOH A 34 534 2030 HOH HOH . I 6 HOH A 35 535 2050 HOH HOH . I 6 HOH A 36 536 2054 HOH HOH . I 6 HOH A 37 537 2031 HOH HOH . I 6 HOH A 38 538 2021 HOH HOH . I 6 HOH A 39 539 2044 HOH HOH . I 6 HOH A 40 540 2057 HOH HOH . I 6 HOH A 41 541 9 HOH HOH . I 6 HOH A 42 542 3 HOH HOH . I 6 HOH A 43 543 2006 HOH HOH . I 6 HOH A 44 544 2059 HOH HOH . I 6 HOH A 45 545 2032 HOH HOH . I 6 HOH A 46 546 2038 HOH HOH . I 6 HOH A 47 547 2017 HOH HOH . I 6 HOH A 48 548 7 HOH HOH . I 6 HOH A 49 549 43 HOH HOH . I 6 HOH A 50 550 42 HOH HOH . I 6 HOH A 51 551 2015 HOH HOH . I 6 HOH A 52 552 2065 HOH HOH . I 6 HOH A 53 553 46 HOH HOH . I 6 HOH A 54 554 2035 HOH HOH . I 6 HOH A 55 555 2039 HOH HOH . I 6 HOH A 56 556 39 HOH HOH . I 6 HOH A 57 557 24 HOH HOH . I 6 HOH A 58 558 2033 HOH HOH . I 6 HOH A 59 559 2052 HOH HOH . I 6 HOH A 60 560 2048 HOH HOH . I 6 HOH A 61 561 18 HOH HOH . I 6 HOH A 62 562 2026 HOH HOH . I 6 HOH A 63 563 47 HOH HOH . I 6 HOH A 64 564 2012 HOH HOH . I 6 HOH A 65 565 2005 HOH HOH . I 6 HOH A 66 566 2042 HOH HOH . I 6 HOH A 67 567 2040 HOH HOH . I 6 HOH A 68 568 2051 HOH HOH . I 6 HOH A 69 569 2055 HOH HOH . I 6 HOH A 70 570 50 HOH HOH . I 6 HOH A 71 571 2013 HOH HOH . I 6 HOH A 72 572 2063 HOH HOH . I 6 HOH A 73 573 49 HOH HOH . I 6 HOH A 74 574 2041 HOH HOH . I 6 HOH A 75 575 2068 HOH HOH . I 6 HOH A 76 576 2064 HOH HOH . I 6 HOH A 77 577 6 HOH HOH . I 6 HOH A 78 578 2004 HOH HOH . I 6 HOH A 79 579 2061 HOH HOH . I 6 HOH A 80 580 26 HOH HOH . I 6 HOH A 81 581 2024 HOH HOH . I 6 HOH A 82 582 38 HOH HOH . I 6 HOH A 83 583 51 HOH HOH . I 6 HOH A 84 584 37 HOH HOH . I 6 HOH A 85 585 2056 HOH HOH . I 6 HOH A 86 586 2045 HOH HOH . I 6 HOH A 87 587 35 HOH HOH . I 6 HOH A 88 588 2010 HOH HOH . I 6 HOH A 89 589 40 HOH HOH . I 6 HOH A 90 590 2066 HOH HOH . I 6 HOH A 91 591 14 HOH HOH . I 6 HOH A 92 592 34 HOH HOH . I 6 HOH A 93 593 2062 HOH HOH . I 6 HOH A 94 594 41 HOH HOH . I 6 HOH A 95 595 20 HOH HOH . I 6 HOH A 96 596 21 HOH HOH . I 6 HOH A 97 597 2060 HOH HOH . I 6 HOH A 98 598 22 HOH HOH . I 6 HOH A 99 599 4 HOH HOH . I 6 HOH A 100 600 13 HOH HOH . I 6 HOH A 101 601 5 HOH HOH . I 6 HOH A 102 602 2022 HOH HOH . I 6 HOH A 103 603 30 HOH HOH . I 6 HOH A 104 604 17 HOH HOH . I 6 HOH A 105 605 29 HOH HOH . I 6 HOH A 106 606 15 HOH HOH . I 6 HOH A 107 607 33 HOH HOH . I 6 HOH A 108 608 19 HOH HOH . I 6 HOH A 109 609 31 HOH HOH . I 6 HOH A 110 610 23 HOH HOH . I 6 HOH A 111 611 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -12.35 24.168 -5.868 1 37.42 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . B 2 -12.992 23.693 -7.126 1 36.51 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . B 2 -11.784 23.001 -5.103 1 38.01 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . B 2 -13.123 25.168 -5.04 1 37.26 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . B 2 -10.925 26.481 -6.984 1 33.72 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . B 2 -10.706 26.535 -8.465 1 33.81 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . B 2 -12.027 27.363 -6.448 1 34.24 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . B 2 -11.022 24.992 -6.372 1 34.87 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . B 2 -9.53 27.039 -6.334 1 31.25 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . B 2 -9.281 26.899 -4.914 1 30.87 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . B 2 -8.522 28.108 -4.35 1 30.25 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . B 2 -7.233 28.242 -4.974 1 30.29 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . B 2 -9.229 29.414 -4.642 1 30.39 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . B 2 -10.271 29.71 -3.687 1 30.39 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . B 2 -8.075 30.397 -4.639 1 30.91 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . B 2 -7.705 30.663 -3.269 1 30.89 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . B 2 -6.94 29.606 -5.271 1 30.7 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . B 2 -6.886 29.77 -6.755 1 31.02 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . B 2 -7.589 29.021 -7.629 1 31.33 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . B 2 -7.352 29.395 -8.902 1 30.93 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . B 2 -6.45 30.397 -8.86 1 31.31 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . B 2 -5.751 31.213 -9.878 1 32.4 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . B 2 -5.996 31.03 -11.212 1 33.06 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . B 2 -4.903 32.172 -9.434 1 32.5 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . B 2 -4.674 32.353 -8.109 1 32.46 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . B 2 -5.257 31.627 -7.124 1 32.09 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . B 2 -6.143 30.64 -7.445 1 31.29 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #