data_5OS2
#
_model_server_result.job_id            hi8IEaXuiOqAb8rEaJrY-w 
_model_server_result.datetime_utc      '2024-11-07 17:36:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5os2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5OS2 
#
_exptl.entry_id    5OS2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OS2 
_cell.length_a            81.8 
_cell.length_b            81.8 
_cell.length_c            174.2 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OS2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc3 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc4 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc5 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc6 C MG MG . A MG 402 1_555 F O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc7 C MG MG . A MG 402 1_555 F O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc8 D MG MG . A MG 403 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 39 n n 
PB O2B ADP sing 40 n n 
PB O3B ADP sing 41 n n 
PB O3A ADP sing 42 n n 
O2B HOB2 ADP sing 43 n n 
O3B HOB3 ADP sing 44 n n 
PA O1A ADP doub 45 n n 
PA O2A ADP sing 46 n n 
PA O3A ADP sing 47 n n 
PA O5' ADP sing 48 n n 
O2A HOA2 ADP sing 49 n n 
O5' C5' ADP sing 50 n n 
C5' C4' ADP sing 51 n n 
C5' "H5'1" ADP sing 52 n n 
C5' "H5'2" ADP sing 53 n n 
C4' O4' ADP sing 54 n n 
C4' C3' ADP sing 55 n n 
C4' H4' ADP sing 56 n n 
O4' C1' ADP sing 57 n n 
C3' O3' ADP sing 58 n n 
C3' C2' ADP sing 59 n n 
C3' H3' ADP sing 60 n n 
O3' HO3' ADP sing 61 n n 
C2' O2' ADP sing 62 n n 
C2' C1' ADP sing 63 n n 
C2' H2' ADP sing 64 n n 
O2' HO2' ADP sing 65 n n 
C1' N9 ADP sing 66 n n 
C1' H1' ADP sing 67 n n 
N9 C8 ADP sing 68 n y 
N9 C4 ADP sing 69 n y 
C8 N7 ADP doub 70 n y 
C8 H8 ADP sing 71 n n 
N7 C5 ADP sing 72 n y 
C5 C6 ADP sing 73 n y 
C5 C4 ADP doub 74 n y 
C6 N6 ADP sing 75 n n 
C6 N1 ADP doub 76 n y 
N6 HN61 ADP sing 77 n n 
N6 HN62 ADP sing 78 n n 
N1 C2 ADP sing 79 n y 
C2 N3 ADP doub 80 n y 
C2 H2 ADP sing 81 n n 
N3 C4 ADP sing 82 n y 
#
_atom_sites.entry_id                     5OS2 
_atom_sites.fract_transf_matrix[1][1]    0.012225 
_atom_sites.fract_transf_matrix[1][2]    0.007058 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005741 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 1392 ADP ADP . 
C 3 MG A 1 402 1395 MG MG . 
D 3 MG A 1 403 1396 MG MG . 
E 4 A7K A 1 404 1 A7K FRG . 
F 5 HOH A 1 501 122 HOH HOH . 
F 5 HOH A 2 502 121 HOH HOH . 
F 5 HOH A 3 503 34 HOH HOH . 
F 5 HOH A 4 504 93 HOH HOH . 
F 5 HOH A 5 505 52 HOH HOH . 
F 5 HOH A 6 506 108 HOH HOH . 
F 5 HOH A 7 507 118 HOH HOH . 
F 5 HOH A 8 508 9 HOH HOH . 
F 5 HOH A 9 509 80 HOH HOH . 
F 5 HOH A 10 510 44 HOH HOH . 
F 5 HOH A 11 511 112 HOH HOH . 
F 5 HOH A 12 512 61 HOH HOH . 
F 5 HOH A 13 513 94 HOH HOH . 
F 5 HOH A 14 514 109 HOH HOH . 
F 5 HOH A 15 515 22 HOH HOH . 
F 5 HOH A 16 516 24 HOH HOH . 
F 5 HOH A 17 517 29 HOH HOH . 
F 5 HOH A 18 518 19 HOH HOH . 
F 5 HOH A 19 519 2 HOH HOH . 
F 5 HOH A 20 520 6 HOH HOH . 
F 5 HOH A 21 521 54 HOH HOH . 
F 5 HOH A 22 522 78 HOH HOH . 
F 5 HOH A 23 523 28 HOH HOH . 
F 5 HOH A 24 524 37 HOH HOH . 
F 5 HOH A 25 525 7 HOH HOH . 
F 5 HOH A 26 526 73 HOH HOH . 
F 5 HOH A 27 527 38 HOH HOH . 
F 5 HOH A 28 528 14 HOH HOH . 
F 5 HOH A 29 529 115 HOH HOH . 
F 5 HOH A 30 530 87 HOH HOH . 
F 5 HOH A 31 531 1 HOH HOH . 
F 5 HOH A 32 532 68 HOH HOH . 
F 5 HOH A 33 533 17 HOH HOH . 
F 5 HOH A 34 534 12 HOH HOH . 
F 5 HOH A 35 535 18 HOH HOH . 
F 5 HOH A 36 536 70 HOH HOH . 
F 5 HOH A 37 537 79 HOH HOH . 
F 5 HOH A 38 538 35 HOH HOH . 
F 5 HOH A 39 539 83 HOH HOH . 
F 5 HOH A 40 540 77 HOH HOH . 
F 5 HOH A 41 541 130 HOH HOH . 
F 5 HOH A 42 542 26 HOH HOH . 
F 5 HOH A 43 543 60 HOH HOH . 
F 5 HOH A 44 544 53 HOH HOH . 
F 5 HOH A 45 545 59 HOH HOH . 
F 5 HOH A 46 546 23 HOH HOH . 
F 5 HOH A 47 547 82 HOH HOH . 
F 5 HOH A 48 548 30 HOH HOH . 
F 5 HOH A 49 549 47 HOH HOH . 
F 5 HOH A 50 550 5 HOH HOH . 
F 5 HOH A 51 551 96 HOH HOH . 
F 5 HOH A 52 552 40 HOH HOH . 
F 5 HOH A 53 553 51 HOH HOH . 
F 5 HOH A 54 554 15 HOH HOH . 
F 5 HOH A 55 555 27 HOH HOH . 
F 5 HOH A 56 556 39 HOH HOH . 
F 5 HOH A 57 557 75 HOH HOH . 
F 5 HOH A 58 558 42 HOH HOH . 
F 5 HOH A 59 559 43 HOH HOH . 
F 5 HOH A 60 560 25 HOH HOH . 
F 5 HOH A 61 561 127 HOH HOH . 
F 5 HOH A 62 562 41 HOH HOH . 
F 5 HOH A 63 563 98 HOH HOH . 
F 5 HOH A 64 564 36 HOH HOH . 
F 5 HOH A 65 565 62 HOH HOH . 
F 5 HOH A 66 566 4 HOH HOH . 
F 5 HOH A 67 567 31 HOH HOH . 
F 5 HOH A 68 568 11 HOH HOH . 
F 5 HOH A 69 569 71 HOH HOH . 
F 5 HOH A 70 570 88 HOH HOH . 
F 5 HOH A 71 571 63 HOH HOH . 
F 5 HOH A 72 572 16 HOH HOH . 
F 5 HOH A 73 573 32 HOH HOH . 
F 5 HOH A 74 574 99 HOH HOH . 
F 5 HOH A 75 575 3 HOH HOH . 
F 5 HOH A 76 576 10 HOH HOH . 
F 5 HOH A 77 577 20 HOH HOH . 
F 5 HOH A 78 578 91 HOH HOH . 
F 5 HOH A 79 579 46 HOH HOH . 
F 5 HOH A 80 580 85 HOH HOH . 
F 5 HOH A 81 581 114 HOH HOH . 
F 5 HOH A 82 582 64 HOH HOH . 
F 5 HOH A 83 583 49 HOH HOH . 
F 5 HOH A 84 584 92 HOH HOH . 
F 5 HOH A 85 585 13 HOH HOH . 
F 5 HOH A 86 586 21 HOH HOH . 
F 5 HOH A 87 587 48 HOH HOH . 
F 5 HOH A 88 588 33 HOH HOH . 
F 5 HOH A 89 589 119 HOH HOH . 
F 5 HOH A 90 590 86 HOH HOH . 
F 5 HOH A 91 591 84 HOH HOH . 
F 5 HOH A 92 592 69 HOH HOH . 
F 5 HOH A 93 593 123 HOH HOH . 
F 5 HOH A 94 594 57 HOH HOH . 
F 5 HOH A 95 595 125 HOH HOH . 
F 5 HOH A 96 596 56 HOH HOH . 
F 5 HOH A 97 597 103 HOH HOH . 
F 5 HOH A 98 598 8 HOH HOH . 
F 5 HOH A 99 599 135 HOH HOH . 
F 5 HOH A 100 600 124 HOH HOH . 
F 5 HOH A 101 601 97 HOH HOH . 
F 5 HOH A 102 602 120 HOH HOH . 
F 5 HOH A 103 603 116 HOH HOH . 
F 5 HOH A 104 604 50 HOH HOH . 
F 5 HOH A 105 605 133 HOH HOH . 
F 5 HOH A 106 606 95 HOH HOH . 
F 5 HOH A 107 607 76 HOH HOH . 
F 5 HOH A 108 608 45 HOH HOH . 
F 5 HOH A 109 609 90 HOH HOH . 
F 5 HOH A 110 610 104 HOH HOH . 
F 5 HOH A 111 611 128 HOH HOH . 
F 5 HOH A 112 612 134 HOH HOH . 
F 5 HOH A 113 613 81 HOH HOH . 
F 5 HOH A 114 614 126 HOH HOH . 
F 5 HOH A 115 615 101 HOH HOH . 
F 5 HOH A 116 616 136 HOH HOH . 
F 5 HOH A 117 617 89 HOH HOH . 
F 5 HOH A 118 618 100 HOH HOH . 
F 5 HOH A 119 619 132 HOH HOH . 
F 5 HOH A 120 620 129 HOH HOH . 
F 5 HOH A 121 621 137 HOH HOH . 
F 5 HOH A 122 622 138 HOH HOH . 
F 5 HOH A 123 623 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 -12.136 24.185 -5.849 1 31.07 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 -12.843 23.872 -7.137 1 35.39 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 -11.58 22.979 -5.152 1 36.44 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 -12.803 25.243 -5.007 1 29.57 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 -10.637 26.4 -6.964 1 26.65 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 -10.387 26.393 -8.465 1 28.9 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 -11.653 27.382 -6.437 1 26.44 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 -10.76 24.929 -6.348 1 25.93 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 -9.227 26.925 -6.335 1 27.3 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 -9.015 26.805 -4.915 1 26.66 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 -8.238 28.003 -4.351 1 27.46 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 -6.939 28.113 -4.944 1 25.14 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 -8.923 29.334 -4.636 1 26.29 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 -9.92 29.633 -3.651 1 27.57 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 -7.75 30.308 -4.632 1 29.12 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 -7.357 30.57 -3.264 1 26.09 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 -6.631 29.491 -5.242 1 25.36 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 -6.57 29.659 -6.733 1 28 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 -7.261 28.912 -7.626 1 26.51 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 -6.989 29.286 -8.904 1 25.62 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 -6.086 30.281 -8.845 1 24.26 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 -5.378 31.11 -9.831 1 26.94 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 -5.606 30.924 -11.165 1 26.29 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 -4.524 32.068 -9.359 1 22.55 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 -4.317 32.252 -8.03 1 25.64 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 -4.929 31.52 -7.066 1 24.41 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 -5.823 30.542 -7.404 1 26.93 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           27 
#