data_5OS2
#
_model_server_result.job_id            P3o5nP7ev9z7Vl_8wsBZ2A 
_model_server_result.datetime_utc      '2024-11-27 10:03:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5os2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    5OS2 
#
_exptl.entry_id    5OS2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.319 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[2-[4-(hydroxymethyl)piperidin-1-yl]phenyl]methylazanium' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OS2 
_cell.length_a            81.8 
_cell.length_b            81.8 
_cell.length_c            174.2 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OS2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc3 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc4 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc5 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc6 C MG MG . A MG 402 1_555 F O HOH . A HOH 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc7 C MG MG . A MG 402 1_555 F O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc8 D MG MG . A MG 403 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
#
_chem_comp.formula           'C13 H21 N2 O 1' 
_chem_comp.formula_weight    221.319 
_chem_comp.id                A7K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[2-[4-(hydroxymethyl)piperidin-1-yl]phenyl]methylazanium' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C13 A7K sing 1 n n 
C13 C10 A7K sing 2 n n 
C9 C10 A7K sing 3 n n 
C9 C8 A7K sing 4 n n 
C10 C11 A7K sing 5 n n 
N1 C7 A7K sing 6 n n 
C8 N2 A7K sing 7 n n 
C11 C12 A7K sing 8 n n 
C7 C5 A7K sing 9 n n 
N2 C12 A7K sing 10 n n 
N2 C4 A7K sing 11 n n 
C5 C4 A7K doub 12 n y 
C5 C6 A7K sing 13 n y 
C4 C3 A7K sing 14 n y 
C6 C1 A7K doub 15 n y 
C3 C2 A7K doub 16 n y 
C1 C2 A7K sing 17 n y 
C12 H1 A7K sing 18 n n 
C12 H2 A7K sing 19 n n 
C13 H3 A7K sing 20 n n 
C13 H4 A7K sing 21 n n 
C11 H5 A7K sing 22 n n 
C11 H6 A7K sing 23 n n 
C10 H7 A7K sing 24 n n 
C9 H8 A7K sing 25 n n 
C9 H9 A7K sing 26 n n 
C8 H10 A7K sing 27 n n 
C8 H11 A7K sing 28 n n 
C7 H12 A7K sing 29 n n 
C7 H13 A7K sing 30 n n 
C6 H14 A7K sing 31 n n 
C3 H15 A7K sing 32 n n 
C2 H16 A7K sing 33 n n 
C1 H17 A7K sing 34 n n 
N1 H18 A7K sing 35 n n 
N1 H19 A7K sing 36 n n 
N1 H20 A7K sing 37 n n 
O1 H21 A7K sing 38 n n 
#
_atom_sites.entry_id                     5OS2 
_atom_sites.fract_transf_matrix[1][1]    0.012225 
_atom_sites.fract_transf_matrix[1][2]    0.007058 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005741 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 1392 ADP ADP . 
C 3 MG A 1 402 1395 MG MG . 
D 3 MG A 1 403 1396 MG MG . 
E 4 A7K A 1 404 1 A7K FRG . 
F 5 HOH A 1 501 122 HOH HOH . 
F 5 HOH A 2 502 121 HOH HOH . 
F 5 HOH A 3 503 34 HOH HOH . 
F 5 HOH A 4 504 93 HOH HOH . 
F 5 HOH A 5 505 52 HOH HOH . 
F 5 HOH A 6 506 108 HOH HOH . 
F 5 HOH A 7 507 118 HOH HOH . 
F 5 HOH A 8 508 9 HOH HOH . 
F 5 HOH A 9 509 80 HOH HOH . 
F 5 HOH A 10 510 44 HOH HOH . 
F 5 HOH A 11 511 112 HOH HOH . 
F 5 HOH A 12 512 61 HOH HOH . 
F 5 HOH A 13 513 94 HOH HOH . 
F 5 HOH A 14 514 109 HOH HOH . 
F 5 HOH A 15 515 22 HOH HOH . 
F 5 HOH A 16 516 24 HOH HOH . 
F 5 HOH A 17 517 29 HOH HOH . 
F 5 HOH A 18 518 19 HOH HOH . 
F 5 HOH A 19 519 2 HOH HOH . 
F 5 HOH A 20 520 6 HOH HOH . 
F 5 HOH A 21 521 54 HOH HOH . 
F 5 HOH A 22 522 78 HOH HOH . 
F 5 HOH A 23 523 28 HOH HOH . 
F 5 HOH A 24 524 37 HOH HOH . 
F 5 HOH A 25 525 7 HOH HOH . 
F 5 HOH A 26 526 73 HOH HOH . 
F 5 HOH A 27 527 38 HOH HOH . 
F 5 HOH A 28 528 14 HOH HOH . 
F 5 HOH A 29 529 115 HOH HOH . 
F 5 HOH A 30 530 87 HOH HOH . 
F 5 HOH A 31 531 1 HOH HOH . 
F 5 HOH A 32 532 68 HOH HOH . 
F 5 HOH A 33 533 17 HOH HOH . 
F 5 HOH A 34 534 12 HOH HOH . 
F 5 HOH A 35 535 18 HOH HOH . 
F 5 HOH A 36 536 70 HOH HOH . 
F 5 HOH A 37 537 79 HOH HOH . 
F 5 HOH A 38 538 35 HOH HOH . 
F 5 HOH A 39 539 83 HOH HOH . 
F 5 HOH A 40 540 77 HOH HOH . 
F 5 HOH A 41 541 130 HOH HOH . 
F 5 HOH A 42 542 26 HOH HOH . 
F 5 HOH A 43 543 60 HOH HOH . 
F 5 HOH A 44 544 53 HOH HOH . 
F 5 HOH A 45 545 59 HOH HOH . 
F 5 HOH A 46 546 23 HOH HOH . 
F 5 HOH A 47 547 82 HOH HOH . 
F 5 HOH A 48 548 30 HOH HOH . 
F 5 HOH A 49 549 47 HOH HOH . 
F 5 HOH A 50 550 5 HOH HOH . 
F 5 HOH A 51 551 96 HOH HOH . 
F 5 HOH A 52 552 40 HOH HOH . 
F 5 HOH A 53 553 51 HOH HOH . 
F 5 HOH A 54 554 15 HOH HOH . 
F 5 HOH A 55 555 27 HOH HOH . 
F 5 HOH A 56 556 39 HOH HOH . 
F 5 HOH A 57 557 75 HOH HOH . 
F 5 HOH A 58 558 42 HOH HOH . 
F 5 HOH A 59 559 43 HOH HOH . 
F 5 HOH A 60 560 25 HOH HOH . 
F 5 HOH A 61 561 127 HOH HOH . 
F 5 HOH A 62 562 41 HOH HOH . 
F 5 HOH A 63 563 98 HOH HOH . 
F 5 HOH A 64 564 36 HOH HOH . 
F 5 HOH A 65 565 62 HOH HOH . 
F 5 HOH A 66 566 4 HOH HOH . 
F 5 HOH A 67 567 31 HOH HOH . 
F 5 HOH A 68 568 11 HOH HOH . 
F 5 HOH A 69 569 71 HOH HOH . 
F 5 HOH A 70 570 88 HOH HOH . 
F 5 HOH A 71 571 63 HOH HOH . 
F 5 HOH A 72 572 16 HOH HOH . 
F 5 HOH A 73 573 32 HOH HOH . 
F 5 HOH A 74 574 99 HOH HOH . 
F 5 HOH A 75 575 3 HOH HOH . 
F 5 HOH A 76 576 10 HOH HOH . 
F 5 HOH A 77 577 20 HOH HOH . 
F 5 HOH A 78 578 91 HOH HOH . 
F 5 HOH A 79 579 46 HOH HOH . 
F 5 HOH A 80 580 85 HOH HOH . 
F 5 HOH A 81 581 114 HOH HOH . 
F 5 HOH A 82 582 64 HOH HOH . 
F 5 HOH A 83 583 49 HOH HOH . 
F 5 HOH A 84 584 92 HOH HOH . 
F 5 HOH A 85 585 13 HOH HOH . 
F 5 HOH A 86 586 21 HOH HOH . 
F 5 HOH A 87 587 48 HOH HOH . 
F 5 HOH A 88 588 33 HOH HOH . 
F 5 HOH A 89 589 119 HOH HOH . 
F 5 HOH A 90 590 86 HOH HOH . 
F 5 HOH A 91 591 84 HOH HOH . 
F 5 HOH A 92 592 69 HOH HOH . 
F 5 HOH A 93 593 123 HOH HOH . 
F 5 HOH A 94 594 57 HOH HOH . 
F 5 HOH A 95 595 125 HOH HOH . 
F 5 HOH A 96 596 56 HOH HOH . 
F 5 HOH A 97 597 103 HOH HOH . 
F 5 HOH A 98 598 8 HOH HOH . 
F 5 HOH A 99 599 135 HOH HOH . 
F 5 HOH A 100 600 124 HOH HOH . 
F 5 HOH A 101 601 97 HOH HOH . 
F 5 HOH A 102 602 120 HOH HOH . 
F 5 HOH A 103 603 116 HOH HOH . 
F 5 HOH A 104 604 50 HOH HOH . 
F 5 HOH A 105 605 133 HOH HOH . 
F 5 HOH A 106 606 95 HOH HOH . 
F 5 HOH A 107 607 76 HOH HOH . 
F 5 HOH A 108 608 45 HOH HOH . 
F 5 HOH A 109 609 90 HOH HOH . 
F 5 HOH A 110 610 104 HOH HOH . 
F 5 HOH A 111 611 128 HOH HOH . 
F 5 HOH A 112 612 134 HOH HOH . 
F 5 HOH A 113 613 81 HOH HOH . 
F 5 HOH A 114 614 126 HOH HOH . 
F 5 HOH A 115 615 101 HOH HOH . 
F 5 HOH A 116 616 136 HOH HOH . 
F 5 HOH A 117 617 89 HOH HOH . 
F 5 HOH A 118 618 100 HOH HOH . 
F 5 HOH A 119 619 132 HOH HOH . 
F 5 HOH A 120 620 129 HOH HOH . 
F 5 HOH A 121 621 137 HOH HOH . 
F 5 HOH A 122 622 138 HOH HOH . 
F 5 HOH A 123 623 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 A7K . . . E 4 -12.131 14.971 -16.776 1 61.6 ? C12 A7K 404 A 1 
HETATM 2 C C13 A7K . . . E 4 -11.817 16.365 -20.365 1 60.85 ? C13 A7K 404 A 1 
HETATM 3 C C11 A7K . . . E 4 -11.669 15.903 -17.884 1 57.13 ? C11 A7K 404 A 1 
HETATM 4 C C10 A7K . . . E 4 -12.212 15.441 -19.236 1 60.23 ? C10 A7K 404 A 1 
HETATM 5 C C9 A7K . . . E 4 -11.767 14.007 -19.486 1 66.46 ? C9 A7K 404 A 1 
HETATM 6 C C8 A7K . . . E 4 -12.314 13.12 -18.416 1 68.65 ? C8 A7K 404 A 1 
HETATM 7 C C7 A7K . . . E 4 -9.149 12.513 -17.581 1 66.16 ? C7 A7K 404 A 1 
HETATM 8 C C4 A7K . . . E 4 -11.306 12.567 -16.203 1 66.14 ? C4 A7K 404 A 1 
HETATM 9 C C5 A7K . . . E 4 -10.03 12.027 -16.452 1 67.04 ? C5 A7K 404 A 1 
HETATM 10 C C6 A7K . . . E 4 -9.555 11.049 -15.577 1 66.15 ? C6 A7K 404 A 1 
HETATM 11 C C3 A7K . . . E 4 -12.063 12.095 -15.134 1 59.2 ? C3 A7K 404 A 1 
HETATM 12 C C2 A7K . . . E 4 -11.568 11.115 -14.3 1 64.18 ? C2 A7K 404 A 1 
HETATM 13 C C1 A7K . . . E 4 -10.319 10.598 -14.516 1 62.49 ? C1 A7K 404 A 1 
HETATM 14 N N1 A7K . . . E 4 -9.373 11.793 -18.86 1 68.55 ? N1 A7K 404 A 1 
HETATM 15 N N2 A7K . . . E 4 -11.836 13.56 -17.097 1 65.53 ? N2 A7K 404 A 1 
HETATM 16 O O1 A7K . . . E 4 -12.147 15.677 -21.56 1 65.45 ? O1 A7K 404 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           16 
#