data_5OS5 # _model_server_result.job_id hqjPCF6POYIU0w89MzR53w _model_server_result.datetime_utc '2024-11-07 18:56:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5os5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5OS5 # _exptl.entry_id 5OS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OS5 _cell.length_a 82.37 _cell.length_b 82.37 _cell.length_c 175.31 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 137 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 A OD1 ASP 150 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc3 A OD2 ASP 150 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A C THR 163 A THR 287 1_555 A N TPO 164 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C TPO 164 A TPO 288 1_555 A N LEU 165 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc4 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc5 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc6 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc7 C MG MG . A MG 402 1_555 I O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc8 C MG MG . A MG 402 1_555 I O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 D MG MG . A MG 403 1_555 I O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 D MG MG . A MG 403 1_555 I O HOH . A HOH 569 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc11 D MG MG . A MG 403 1_555 I O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc12 D MG MG . A MG 403 1_555 I O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc13 D MG MG . A MG 403 1_555 I O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OS5 _atom_sites.fract_transf_matrix[1][1] 0.01214 _atom_sites.fract_transf_matrix[1][2] 0.007009 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 A8K A 1 404 1 A8K FRG . F 5 CL A 1 405 2 CL CL . G 5 CL A 1 406 3 CL CL . H 5 CL A 1 407 4 CL CL . I 6 HOH A 1 501 93 HOH HOH . I 6 HOH A 2 502 78 HOH HOH . I 6 HOH A 3 503 110 HOH HOH . I 6 HOH A 4 504 40 HOH HOH . I 6 HOH A 5 505 66 HOH HOH . I 6 HOH A 6 506 49 HOH HOH . I 6 HOH A 7 507 83 HOH HOH . I 6 HOH A 8 508 107 HOH HOH . I 6 HOH A 9 509 15 HOH HOH . I 6 HOH A 10 510 33 HOH HOH . I 6 HOH A 11 511 118 HOH HOH . I 6 HOH A 12 512 104 HOH HOH . I 6 HOH A 13 513 69 HOH HOH . I 6 HOH A 14 514 23 HOH HOH . I 6 HOH A 15 515 2 HOH HOH . I 6 HOH A 16 516 86 HOH HOH . I 6 HOH A 17 517 62 HOH HOH . I 6 HOH A 18 518 56 HOH HOH . I 6 HOH A 19 519 114 HOH HOH . I 6 HOH A 20 520 12 HOH HOH . I 6 HOH A 21 521 30 HOH HOH . I 6 HOH A 22 522 117 HOH HOH . I 6 HOH A 23 523 148 HOH HOH . I 6 HOH A 24 524 108 HOH HOH . I 6 HOH A 25 525 41 HOH HOH . I 6 HOH A 26 526 125 HOH HOH . I 6 HOH A 27 527 34 HOH HOH . I 6 HOH A 28 528 19 HOH HOH . I 6 HOH A 29 529 24 HOH HOH . I 6 HOH A 30 530 79 HOH HOH . I 6 HOH A 31 531 6 HOH HOH . I 6 HOH A 32 532 135 HOH HOH . I 6 HOH A 33 533 47 HOH HOH . I 6 HOH A 34 534 109 HOH HOH . I 6 HOH A 35 535 13 HOH HOH . I 6 HOH A 36 536 1 HOH HOH . I 6 HOH A 37 537 5 HOH HOH . I 6 HOH A 38 538 60 HOH HOH . I 6 HOH A 39 539 101 HOH HOH . I 6 HOH A 40 540 16 HOH HOH . I 6 HOH A 41 541 72 HOH HOH . I 6 HOH A 42 542 121 HOH HOH . I 6 HOH A 43 543 20 HOH HOH . I 6 HOH A 44 544 38 HOH HOH . I 6 HOH A 45 545 14 HOH HOH . I 6 HOH A 46 546 31 HOH HOH . I 6 HOH A 47 547 36 HOH HOH . I 6 HOH A 48 548 126 HOH HOH . I 6 HOH A 49 549 52 HOH HOH . I 6 HOH A 50 550 37 HOH HOH . I 6 HOH A 51 551 18 HOH HOH . I 6 HOH A 52 552 35 HOH HOH . I 6 HOH A 53 553 63 HOH HOH . I 6 HOH A 54 554 11 HOH HOH . I 6 HOH A 55 555 21 HOH HOH . I 6 HOH A 56 556 9 HOH HOH . I 6 HOH A 57 557 10 HOH HOH . I 6 HOH A 58 558 28 HOH HOH . I 6 HOH A 59 559 99 HOH HOH . I 6 HOH A 60 560 39 HOH HOH . I 6 HOH A 61 561 136 HOH HOH . I 6 HOH A 62 562 27 HOH HOH . I 6 HOH A 63 563 26 HOH HOH . I 6 HOH A 64 564 3 HOH HOH . I 6 HOH A 65 565 65 HOH HOH . I 6 HOH A 66 566 22 HOH HOH . I 6 HOH A 67 567 68 HOH HOH . I 6 HOH A 68 568 70 HOH HOH . I 6 HOH A 69 569 46 HOH HOH . I 6 HOH A 70 570 57 HOH HOH . I 6 HOH A 71 571 29 HOH HOH . I 6 HOH A 72 572 129 HOH HOH . I 6 HOH A 73 573 4 HOH HOH . I 6 HOH A 74 574 64 HOH HOH . I 6 HOH A 75 575 45 HOH HOH . I 6 HOH A 76 576 111 HOH HOH . I 6 HOH A 77 577 113 HOH HOH . I 6 HOH A 78 578 73 HOH HOH . I 6 HOH A 79 579 75 HOH HOH . I 6 HOH A 80 580 32 HOH HOH . I 6 HOH A 81 581 82 HOH HOH . I 6 HOH A 82 582 55 HOH HOH . I 6 HOH A 83 583 8 HOH HOH . I 6 HOH A 84 584 127 HOH HOH . I 6 HOH A 85 585 122 HOH HOH . I 6 HOH A 86 586 84 HOH HOH . I 6 HOH A 87 587 42 HOH HOH . I 6 HOH A 88 588 43 HOH HOH . I 6 HOH A 89 589 132 HOH HOH . I 6 HOH A 90 590 59 HOH HOH . I 6 HOH A 91 591 51 HOH HOH . I 6 HOH A 92 592 48 HOH HOH . I 6 HOH A 93 593 71 HOH HOH . I 6 HOH A 94 594 85 HOH HOH . I 6 HOH A 95 595 130 HOH HOH . I 6 HOH A 96 596 17 HOH HOH . I 6 HOH A 97 597 88 HOH HOH . I 6 HOH A 98 598 90 HOH HOH . I 6 HOH A 99 599 138 HOH HOH . I 6 HOH A 100 600 50 HOH HOH . I 6 HOH A 101 601 92 HOH HOH . I 6 HOH A 102 602 80 HOH HOH . I 6 HOH A 103 603 134 HOH HOH . I 6 HOH A 104 604 116 HOH HOH . I 6 HOH A 105 605 7 HOH HOH . I 6 HOH A 106 606 133 HOH HOH . I 6 HOH A 107 607 67 HOH HOH . I 6 HOH A 108 608 87 HOH HOH . I 6 HOH A 109 609 131 HOH HOH . I 6 HOH A 110 610 140 HOH HOH . I 6 HOH A 111 611 145 HOH HOH . I 6 HOH A 112 612 120 HOH HOH . I 6 HOH A 113 613 106 HOH HOH . I 6 HOH A 114 614 89 HOH HOH . I 6 HOH A 115 615 142 HOH HOH . I 6 HOH A 116 616 139 HOH HOH . I 6 HOH A 117 617 143 HOH HOH . I 6 HOH A 118 618 144 HOH HOH . I 6 HOH A 119 619 147 HOH HOH . I 6 HOH A 120 620 102 HOH HOH . I 6 HOH A 121 621 81 HOH HOH . I 6 HOH A 122 622 61 HOH HOH . I 6 HOH A 123 623 100 HOH HOH . I 6 HOH A 124 624 115 HOH HOH . I 6 HOH A 125 625 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -12.705 24.499 -5.963 1 37.04 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . B 2 -13.395 24.049 -7.223 1 35.89 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . B 2 -12.079 23.346 -5.24 1 39.12 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . B 2 -13.476 25.44 -5.079 1 36.29 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . B 2 -11.337 26.889 -7.054 1 34.49 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . B 2 -11.146 26.942 -8.563 1 35.06 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . B 2 -12.426 27.744 -6.442 1 36.26 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . B 2 -11.435 25.357 -6.544 1 32.02 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . B 2 -9.913 27.36 -6.398 1 35.62 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . B 2 -9.662 27.263 -4.989 1 33.29 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . B 2 -8.922 28.498 -4.457 1 32.95 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . B 2 -7.63 28.658 -5.081 1 33.85 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . B 2 -9.617 29.825 -4.727 1 36.21 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . B 2 -10.651 30.108 -3.763 1 33.63 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . B 2 -8.468 30.802 -4.67 1 36.06 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . B 2 -8.09 30.979 -3.3 1 34.44 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . B 2 -7.323 30.039 -5.304 1 34.42 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . B 2 -7.278 30.232 -6.773 1 30.35 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . B 2 -7.999 29.481 -7.635 1 33.66 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . B 2 -7.774 29.834 -8.918 1 31.44 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . B 2 -6.877 30.853 -8.884 1 35.02 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . B 2 -6.212 31.687 -9.904 1 38.04 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . B 2 -6.485 31.496 -11.22 1 35.71 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . B 2 -5.359 32.655 -9.48 1 36.43 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . B 2 -5.122 32.841 -8.171 1 34.45 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . B 2 -5.671 32.117 -7.175 1 32.83 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . B 2 -6.554 31.112 -7.472 1 32.45 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #