data_5OS6
#
_model_server_result.job_id            tzcEFQRFfbp3ydoJamX9LQ 
_model_server_result.datetime_utc      '2025-04-28 06:43:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5os6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5OS6 
#
_exptl.entry_id    5OS6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OS6 
_cell.length_a            81.72 
_cell.length_b            81.72 
_cell.length_c            174.29 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OS6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc3 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc6 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc7 C MG MG . A MG 402 1_555 F O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc8 C MG MG . A MG 402 1_555 F O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? 
metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 28 n n 
PB O2B ADP sing 29 n n 
PB O3B ADP sing 30 n n 
PB O3A ADP sing 31 n n 
O2B HOB2 ADP sing 32 n n 
O3B HOB3 ADP sing 33 n n 
PA O1A ADP doub 34 n n 
PA O2A ADP sing 35 n n 
PA O3A ADP sing 36 n n 
PA O5' ADP sing 37 n n 
O2A HOA2 ADP sing 38 n n 
O5' C5' ADP sing 39 n n 
C5' C4' ADP sing 40 n n 
C5' "H5'1" ADP sing 41 n n 
C5' "H5'2" ADP sing 42 n n 
C4' O4' ADP sing 43 n n 
C4' C3' ADP sing 44 n n 
C4' H4' ADP sing 45 n n 
O4' C1' ADP sing 46 n n 
C3' O3' ADP sing 47 n n 
C3' C2' ADP sing 48 n n 
C3' H3' ADP sing 49 n n 
O3' HO3' ADP sing 50 n n 
C2' O2' ADP sing 51 n n 
C2' C1' ADP sing 52 n n 
C2' H2' ADP sing 53 n n 
O2' HO2' ADP sing 54 n n 
C1' N9 ADP sing 55 n n 
C1' H1' ADP sing 56 n n 
N9 C8 ADP sing 57 n y 
N9 C4 ADP sing 58 n y 
C8 N7 ADP doub 59 n y 
C8 H8 ADP sing 60 n n 
N7 C5 ADP sing 61 n y 
C5 C6 ADP sing 62 n y 
C5 C4 ADP doub 63 n y 
C6 N6 ADP sing 64 n n 
C6 N1 ADP doub 65 n y 
N6 HN61 ADP sing 66 n n 
N6 HN62 ADP sing 67 n n 
N1 C2 ADP sing 68 n y 
C2 N3 ADP doub 69 n y 
C2 H2 ADP sing 70 n n 
N3 C4 ADP sing 71 n y 
#
_atom_sites.entry_id                     5OS6 
_atom_sites.fract_transf_matrix[1][1]    0.012237 
_atom_sites.fract_transf_matrix[1][2]    0.007065 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01413 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005738 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 1392 ADP ADP . 
C 3 MG A 1 402 1395 MG MG . 
D 3 MG A 1 403 1396 MG MG . 
E 4 A7Q A 1 404 1 A7Q FRG . 
F 5 HOH A 1 501 61 HOH HOH . 
F 5 HOH A 2 502 32 HOH HOH . 
F 5 HOH A 3 503 7 HOH HOH . 
F 5 HOH A 4 504 41 HOH HOH . 
F 5 HOH A 5 505 30 HOH HOH . 
F 5 HOH A 6 506 26 HOH HOH . 
F 5 HOH A 7 507 24 HOH HOH . 
F 5 HOH A 8 508 8 HOH HOH . 
F 5 HOH A 9 509 19 HOH HOH . 
F 5 HOH A 10 510 11 HOH HOH . 
F 5 HOH A 11 511 56 HOH HOH . 
F 5 HOH A 12 512 14 HOH HOH . 
F 5 HOH A 13 513 35 HOH HOH . 
F 5 HOH A 14 514 12 HOH HOH . 
F 5 HOH A 15 515 54 HOH HOH . 
F 5 HOH A 16 516 34 HOH HOH . 
F 5 HOH A 17 517 13 HOH HOH . 
F 5 HOH A 18 518 39 HOH HOH . 
F 5 HOH A 19 519 22 HOH HOH . 
F 5 HOH A 20 520 17 HOH HOH . 
F 5 HOH A 21 521 5 HOH HOH . 
F 5 HOH A 22 522 51 HOH HOH . 
F 5 HOH A 23 523 27 HOH HOH . 
F 5 HOH A 24 524 3 HOH HOH . 
F 5 HOH A 25 525 28 HOH HOH . 
F 5 HOH A 26 526 4 HOH HOH . 
F 5 HOH A 27 527 9 HOH HOH . 
F 5 HOH A 28 528 52 HOH HOH . 
F 5 HOH A 29 529 37 HOH HOH . 
F 5 HOH A 30 530 29 HOH HOH . 
F 5 HOH A 31 531 16 HOH HOH . 
F 5 HOH A 32 532 20 HOH HOH . 
F 5 HOH A 33 533 33 HOH HOH . 
F 5 HOH A 34 534 10 HOH HOH . 
F 5 HOH A 35 535 2 HOH HOH . 
F 5 HOH A 36 536 18 HOH HOH . 
F 5 HOH A 37 537 23 HOH HOH . 
F 5 HOH A 38 538 42 HOH HOH . 
F 5 HOH A 39 539 6 HOH HOH . 
F 5 HOH A 40 540 31 HOH HOH . 
F 5 HOH A 41 541 15 HOH HOH . 
F 5 HOH A 42 542 50 HOH HOH . 
F 5 HOH A 43 543 48 HOH HOH . 
F 5 HOH A 44 544 40 HOH HOH . 
F 5 HOH A 45 545 21 HOH HOH . 
F 5 HOH A 46 546 62 HOH HOH . 
F 5 HOH A 47 547 46 HOH HOH . 
F 5 HOH A 48 548 43 HOH HOH . 
F 5 HOH A 49 549 47 HOH HOH . 
F 5 HOH A 50 550 45 HOH HOH . 
F 5 HOH A 51 551 38 HOH HOH . 
F 5 HOH A 52 552 65 HOH HOH . 
F 5 HOH A 53 553 63 HOH HOH . 
F 5 HOH A 54 554 49 HOH HOH . 
F 5 HOH A 55 555 1 HOH HOH . 
F 5 HOH A 56 556 67 HOH HOH . 
F 5 HOH A 57 557 36 HOH HOH . 
F 5 HOH A 58 558 53 HOH HOH . 
F 5 HOH A 59 559 64 HOH HOH . 
F 5 HOH A 60 560 25 HOH HOH . 
F 5 HOH A 61 561 55 HOH HOH . 
F 5 HOH A 62 562 59 HOH HOH . 
F 5 HOH A 63 563 66 HOH HOH . 
F 5 HOH A 64 564 44 HOH HOH . 
F 5 HOH A 65 565 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 -12.271 24.031 -6.043 1 44.22 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 -12.88 23.732 -7.393 1 46.07 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 -11.788 22.766 -5.398 1 46.85 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 -13.079 24.95 -5.161 1 42.62 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 -10.901 26.364 -6.991 1 43.34 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 -10.738 26.434 -8.487 1 42.12 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 -12.028 27.163 -6.393 1 42.96 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 -10.934 24.853 -6.43 1 43.45 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 -9.515 26.865 -6.344 1 40.26 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 -9.27 26.748 -4.946 1 45.96 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 -8.493 27.949 -4.403 1 44.69 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 -7.172 28.069 -4.96 1 42.15 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 -9.182 29.278 -4.672 1 44.24 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 -10.15 29.533 -3.648 1 45.26 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 -8.005 30.238 -4.624 1 43.16 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 -7.696 30.529 -3.255 1 44.76 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 -6.851 29.439 -5.198 1 38.26 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 -6.804 29.593 -6.68 1 41.96 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 -7.526 28.862 -7.563 1 37.76 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 -7.258 29.225 -8.842 1 37.46 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 -6.334 30.201 -8.802 1 37.98 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 -5.59 31.023 -9.798 1 37.8 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 -5.78 30.894 -11.144 1 37.03 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 -4.703 31.923 -9.317 1 35.79 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 -4.494 32.081 -7.99 1 39.47 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 -5.118 31.361 -7.038 1 38.4 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 -6.038 30.432 -7.367 1 37.34 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           27 
#