data_5OS8 # _model_server_result.job_id QL1GTsrirpUSItoHvmiSUg _model_server_result.datetime_utc '2024-11-06 13:32:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5os8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5OS8 # _exptl.entry_id 5OS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.41 _cell.angle_gamma 90 _cell.entry_id 5OS8 _cell.length_a 58.78 _cell.length_b 46.222 _cell.length_c 63.366 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 138 n n S C1 DMS sing 139 n n S C2 DMS sing 140 n n C1 H11 DMS sing 141 n n C1 H12 DMS sing 142 n n C1 H13 DMS sing 143 n n C2 H21 DMS sing 144 n n C2 H22 DMS sing 145 n n C2 H23 DMS sing 146 n n # _atom_sites.entry_id 5OS8 _atom_sites.fract_transf_matrix[1][1] 0.017013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007016 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 1 ACT ACT . C 2 ACT A 1 402 2 ACT ACT . D 3 DMS A 1 403 1 DMS DMS . E 4 J27 A 1 404 1 J27 J27 . F 4 J27 A 1 405 2 J27 J27 . G 4 J27 A 1 406 3 J27 J27 . H 5 ATP A 1 407 1 ATP ATP . I 6 HOH A 1 501 98 HOH HOH . I 6 HOH A 2 502 64 HOH HOH . I 6 HOH A 3 503 250 HOH HOH . I 6 HOH A 4 504 249 HOH HOH . I 6 HOH A 5 505 21 HOH HOH . I 6 HOH A 6 506 178 HOH HOH . I 6 HOH A 7 507 245 HOH HOH . I 6 HOH A 8 508 273 HOH HOH . I 6 HOH A 9 509 176 HOH HOH . I 6 HOH A 10 510 124 HOH HOH . I 6 HOH A 11 511 269 HOH HOH . I 6 HOH A 12 512 15 HOH HOH . I 6 HOH A 13 513 63 HOH HOH . I 6 HOH A 14 514 93 HOH HOH . I 6 HOH A 15 515 181 HOH HOH . I 6 HOH A 16 516 88 HOH HOH . I 6 HOH A 17 517 108 HOH HOH . I 6 HOH A 18 518 54 HOH HOH . I 6 HOH A 19 519 246 HOH HOH . I 6 HOH A 20 520 5 HOH HOH . I 6 HOH A 21 521 123 HOH HOH . I 6 HOH A 22 522 42 HOH HOH . I 6 HOH A 23 523 198 HOH HOH . I 6 HOH A 24 524 112 HOH HOH . I 6 HOH A 25 525 252 HOH HOH . I 6 HOH A 26 526 138 HOH HOH . I 6 HOH A 27 527 61 HOH HOH . I 6 HOH A 28 528 157 HOH HOH . I 6 HOH A 29 529 149 HOH HOH . I 6 HOH A 30 530 147 HOH HOH . I 6 HOH A 31 531 243 HOH HOH . I 6 HOH A 32 532 82 HOH HOH . I 6 HOH A 33 533 122 HOH HOH . I 6 HOH A 34 534 164 HOH HOH . I 6 HOH A 35 535 239 HOH HOH . I 6 HOH A 36 536 19 HOH HOH . I 6 HOH A 37 537 71 HOH HOH . I 6 HOH A 38 538 207 HOH HOH . I 6 HOH A 39 539 11 HOH HOH . I 6 HOH A 40 540 96 HOH HOH . I 6 HOH A 41 541 233 HOH HOH . I 6 HOH A 42 542 215 HOH HOH . I 6 HOH A 43 543 153 HOH HOH . I 6 HOH A 44 544 20 HOH HOH . I 6 HOH A 45 545 1 HOH HOH . I 6 HOH A 46 546 94 HOH HOH . I 6 HOH A 47 547 16 HOH HOH . I 6 HOH A 48 548 135 HOH HOH . I 6 HOH A 49 549 160 HOH HOH . I 6 HOH A 50 550 102 HOH HOH . I 6 HOH A 51 551 115 HOH HOH . I 6 HOH A 52 552 44 HOH HOH . I 6 HOH A 53 553 78 HOH HOH . I 6 HOH A 54 554 148 HOH HOH . I 6 HOH A 55 555 197 HOH HOH . I 6 HOH A 56 556 52 HOH HOH . I 6 HOH A 57 557 201 HOH HOH . I 6 HOH A 58 558 161 HOH HOH . I 6 HOH A 59 559 99 HOH HOH . I 6 HOH A 60 560 193 HOH HOH . I 6 HOH A 61 561 56 HOH HOH . I 6 HOH A 62 562 45 HOH HOH . I 6 HOH A 63 563 18 HOH HOH . I 6 HOH A 64 564 34 HOH HOH . I 6 HOH A 65 565 95 HOH HOH . I 6 HOH A 66 566 31 HOH HOH . I 6 HOH A 67 567 235 HOH HOH . I 6 HOH A 68 568 7 HOH HOH . I 6 HOH A 69 569 165 HOH HOH . I 6 HOH A 70 570 210 HOH HOH . I 6 HOH A 71 571 172 HOH HOH . I 6 HOH A 72 572 40 HOH HOH . I 6 HOH A 73 573 65 HOH HOH . I 6 HOH A 74 574 145 HOH HOH . I 6 HOH A 75 575 119 HOH HOH . I 6 HOH A 76 576 37 HOH HOH . I 6 HOH A 77 577 9 HOH HOH . I 6 HOH A 78 578 46 HOH HOH . I 6 HOH A 79 579 24 HOH HOH . I 6 HOH A 80 580 14 HOH HOH . I 6 HOH A 81 581 81 HOH HOH . I 6 HOH A 82 582 185 HOH HOH . I 6 HOH A 83 583 263 HOH HOH . I 6 HOH A 84 584 229 HOH HOH . I 6 HOH A 85 585 141 HOH HOH . I 6 HOH A 86 586 12 HOH HOH . I 6 HOH A 87 587 43 HOH HOH . I 6 HOH A 88 588 47 HOH HOH . I 6 HOH A 89 589 85 HOH HOH . I 6 HOH A 90 590 72 HOH HOH . I 6 HOH A 91 591 205 HOH HOH . I 6 HOH A 92 592 38 HOH HOH . I 6 HOH A 93 593 117 HOH HOH . I 6 HOH A 94 594 129 HOH HOH . I 6 HOH A 95 595 62 HOH HOH . I 6 HOH A 96 596 192 HOH HOH . I 6 HOH A 97 597 251 HOH HOH . I 6 HOH A 98 598 53 HOH HOH . I 6 HOH A 99 599 267 HOH HOH . I 6 HOH A 100 600 262 HOH HOH . I 6 HOH A 101 601 25 HOH HOH . I 6 HOH A 102 602 76 HOH HOH . I 6 HOH A 103 603 73 HOH HOH . I 6 HOH A 104 604 231 HOH HOH . I 6 HOH A 105 605 166 HOH HOH . I 6 HOH A 106 606 132 HOH HOH . I 6 HOH A 107 607 190 HOH HOH . I 6 HOH A 108 608 260 HOH HOH . I 6 HOH A 109 609 202 HOH HOH . I 6 HOH A 110 610 256 HOH HOH . I 6 HOH A 111 611 142 HOH HOH . I 6 HOH A 112 612 127 HOH HOH . I 6 HOH A 113 613 222 HOH HOH . I 6 HOH A 114 614 258 HOH HOH . I 6 HOH A 115 615 27 HOH HOH . I 6 HOH A 116 616 275 HOH HOH . I 6 HOH A 117 617 253 HOH HOH . I 6 HOH A 118 618 270 HOH HOH . I 6 HOH A 119 619 10 HOH HOH . I 6 HOH A 120 620 191 HOH HOH . I 6 HOH A 121 621 255 HOH HOH . I 6 HOH A 122 622 74 HOH HOH . I 6 HOH A 123 623 196 HOH HOH . I 6 HOH A 124 624 67 HOH HOH . I 6 HOH A 125 625 151 HOH HOH . I 6 HOH A 126 626 206 HOH HOH . I 6 HOH A 127 627 227 HOH HOH . I 6 HOH A 128 628 23 HOH HOH . I 6 HOH A 129 629 162 HOH HOH . I 6 HOH A 130 630 266 HOH HOH . I 6 HOH A 131 631 6 HOH HOH . I 6 HOH A 132 632 4 HOH HOH . I 6 HOH A 133 633 48 HOH HOH . I 6 HOH A 134 634 133 HOH HOH . I 6 HOH A 135 635 118 HOH HOH . I 6 HOH A 136 636 155 HOH HOH . I 6 HOH A 137 637 116 HOH HOH . I 6 HOH A 138 638 41 HOH HOH . I 6 HOH A 139 639 13 HOH HOH . I 6 HOH A 140 640 220 HOH HOH . I 6 HOH A 141 641 254 HOH HOH . I 6 HOH A 142 642 86 HOH HOH . I 6 HOH A 143 643 244 HOH HOH . I 6 HOH A 144 644 208 HOH HOH . I 6 HOH A 145 645 79 HOH HOH . I 6 HOH A 146 646 28 HOH HOH . I 6 HOH A 147 647 212 HOH HOH . I 6 HOH A 148 648 26 HOH HOH . I 6 HOH A 149 649 80 HOH HOH . I 6 HOH A 150 650 139 HOH HOH . I 6 HOH A 151 651 158 HOH HOH . I 6 HOH A 152 652 213 HOH HOH . I 6 HOH A 153 653 234 HOH HOH . I 6 HOH A 154 654 226 HOH HOH . I 6 HOH A 155 655 242 HOH HOH . I 6 HOH A 156 656 59 HOH HOH . I 6 HOH A 157 657 278 HOH HOH . I 6 HOH A 158 658 35 HOH HOH . I 6 HOH A 159 659 89 HOH HOH . I 6 HOH A 160 660 110 HOH HOH . I 6 HOH A 161 661 276 HOH HOH . I 6 HOH A 162 662 39 HOH HOH . I 6 HOH A 163 663 75 HOH HOH . I 6 HOH A 164 664 3 HOH HOH . I 6 HOH A 165 665 77 HOH HOH . I 6 HOH A 166 666 30 HOH HOH . I 6 HOH A 167 667 211 HOH HOH . I 6 HOH A 168 668 143 HOH HOH . I 6 HOH A 169 669 130 HOH HOH . I 6 HOH A 170 670 171 HOH HOH . I 6 HOH A 171 671 69 HOH HOH . I 6 HOH A 172 672 120 HOH HOH . I 6 HOH A 173 673 247 HOH HOH . I 6 HOH A 174 674 87 HOH HOH . I 6 HOH A 175 675 113 HOH HOH . I 6 HOH A 176 676 58 HOH HOH . I 6 HOH A 177 677 49 HOH HOH . I 6 HOH A 178 678 183 HOH HOH . I 6 HOH A 179 679 187 HOH HOH . I 6 HOH A 180 680 257 HOH HOH . I 6 HOH A 181 681 17 HOH HOH . I 6 HOH A 182 682 134 HOH HOH . I 6 HOH A 183 683 22 HOH HOH . I 6 HOH A 184 684 137 HOH HOH . I 6 HOH A 185 685 216 HOH HOH . I 6 HOH A 186 686 140 HOH HOH . I 6 HOH A 187 687 259 HOH HOH . I 6 HOH A 188 688 101 HOH HOH . I 6 HOH A 189 689 33 HOH HOH . I 6 HOH A 190 690 131 HOH HOH . I 6 HOH A 191 691 109 HOH HOH . I 6 HOH A 192 692 8 HOH HOH . I 6 HOH A 193 693 126 HOH HOH . I 6 HOH A 194 694 271 HOH HOH . I 6 HOH A 195 695 274 HOH HOH . I 6 HOH A 196 696 125 HOH HOH . I 6 HOH A 197 697 150 HOH HOH . I 6 HOH A 198 698 265 HOH HOH . I 6 HOH A 199 699 188 HOH HOH . I 6 HOH A 200 700 84 HOH HOH . I 6 HOH A 201 701 236 HOH HOH . I 6 HOH A 202 702 228 HOH HOH . I 6 HOH A 203 703 272 HOH HOH . I 6 HOH A 204 704 156 HOH HOH . I 6 HOH A 205 705 277 HOH HOH . I 6 HOH A 206 706 221 HOH HOH . I 6 HOH A 207 707 209 HOH HOH . I 6 HOH A 208 708 144 HOH HOH . I 6 HOH A 209 709 240 HOH HOH . I 6 HOH A 210 710 111 HOH HOH . I 6 HOH A 211 711 218 HOH HOH . I 6 HOH A 212 712 182 HOH HOH . I 6 HOH A 213 713 60 HOH HOH . I 6 HOH A 214 714 219 HOH HOH . I 6 HOH A 215 715 194 HOH HOH . I 6 HOH A 216 716 146 HOH HOH . I 6 HOH A 217 717 248 HOH HOH . I 6 HOH A 218 718 159 HOH HOH . I 6 HOH A 219 719 200 HOH HOH . I 6 HOH A 220 720 204 HOH HOH . I 6 HOH A 221 721 152 HOH HOH . I 6 HOH A 222 722 214 HOH HOH . I 6 HOH A 223 723 237 HOH HOH . I 6 HOH A 224 724 100 HOH HOH . I 6 HOH A 225 725 173 HOH HOH . I 6 HOH A 226 726 32 HOH HOH . I 6 HOH A 227 727 195 HOH HOH . I 6 HOH A 228 728 177 HOH HOH . I 6 HOH A 229 729 223 HOH HOH . I 6 HOH A 230 730 136 HOH HOH . I 6 HOH A 231 731 66 HOH HOH . I 6 HOH A 232 732 179 HOH HOH . I 6 HOH A 233 733 170 HOH HOH . I 6 HOH A 234 734 70 HOH HOH . I 6 HOH A 235 735 199 HOH HOH . I 6 HOH A 236 736 174 HOH HOH . I 6 HOH A 237 737 121 HOH HOH . I 6 HOH A 238 738 91 HOH HOH . I 6 HOH A 239 739 184 HOH HOH . I 6 HOH A 240 740 238 HOH HOH . I 6 HOH A 241 741 189 HOH HOH . I 6 HOH A 242 742 163 HOH HOH . I 6 HOH A 243 743 203 HOH HOH . I 6 HOH A 244 744 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -140.483 -184.408 307.425 1 43.23 ? S DMS 403 A 1 HETATM 2 O O DMS . . . D 3 -139.422 -184.064 306.519 1 37.5 ? O DMS 403 A 1 HETATM 3 C C1 DMS . . . D 3 -139.913 -183.914 309.021 1 39.3 ? C1 DMS 403 A 1 HETATM 4 C C2 DMS . . . D 3 -141.72 -183.151 307.273 1 38.75 ? C2 DMS 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 4 #