data_5OSF # _model_server_result.job_id RaBgjvdKSVzOv3wsbqbUzQ _model_server_result.datetime_utc '2024-11-07 17:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5osf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5OSF # _exptl.entry_id 5OSF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OSF _cell.length_a 82.2 _cell.length_b 82.2 _cell.length_c 175.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OSF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc6 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 C MG MG . A MG 402 1_555 F O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc8 C MG MG . A MG 402 1_555 F O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OSF _atom_sites.fract_transf_matrix[1][1] 0.012165 _atom_sites.fract_transf_matrix[1][2] 0.007024 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 A9E A 1 404 1 A9E FRG . F 5 HOH A 1 501 68 HOH HOH . F 5 HOH A 2 502 48 HOH HOH . F 5 HOH A 3 503 38 HOH HOH . F 5 HOH A 4 504 66 HOH HOH . F 5 HOH A 5 505 29 HOH HOH . F 5 HOH A 6 506 5 HOH HOH . F 5 HOH A 7 507 57 HOH HOH . F 5 HOH A 8 508 49 HOH HOH . F 5 HOH A 9 509 19 HOH HOH . F 5 HOH A 10 510 44 HOH HOH . F 5 HOH A 11 511 69 HOH HOH . F 5 HOH A 12 512 6 HOH HOH . F 5 HOH A 13 513 22 HOH HOH . F 5 HOH A 14 514 77 HOH HOH . F 5 HOH A 15 515 17 HOH HOH . F 5 HOH A 16 516 67 HOH HOH . F 5 HOH A 17 517 41 HOH HOH . F 5 HOH A 18 518 74 HOH HOH . F 5 HOH A 19 519 14 HOH HOH . F 5 HOH A 20 520 33 HOH HOH . F 5 HOH A 21 521 46 HOH HOH . F 5 HOH A 22 522 23 HOH HOH . F 5 HOH A 23 523 79 HOH HOH . F 5 HOH A 24 524 28 HOH HOH . F 5 HOH A 25 525 9 HOH HOH . F 5 HOH A 26 526 30 HOH HOH . F 5 HOH A 27 527 55 HOH HOH . F 5 HOH A 28 528 39 HOH HOH . F 5 HOH A 29 529 32 HOH HOH . F 5 HOH A 30 530 47 HOH HOH . F 5 HOH A 31 531 13 HOH HOH . F 5 HOH A 32 532 10 HOH HOH . F 5 HOH A 33 533 11 HOH HOH . F 5 HOH A 34 534 51 HOH HOH . F 5 HOH A 35 535 50 HOH HOH . F 5 HOH A 36 536 63 HOH HOH . F 5 HOH A 37 537 20 HOH HOH . F 5 HOH A 38 538 35 HOH HOH . F 5 HOH A 39 539 81 HOH HOH . F 5 HOH A 40 540 18 HOH HOH . F 5 HOH A 41 541 36 HOH HOH . F 5 HOH A 42 542 4 HOH HOH . F 5 HOH A 43 543 52 HOH HOH . F 5 HOH A 44 544 25 HOH HOH . F 5 HOH A 45 545 53 HOH HOH . F 5 HOH A 46 546 2 HOH HOH . F 5 HOH A 47 547 83 HOH HOH . F 5 HOH A 48 548 7 HOH HOH . F 5 HOH A 49 549 76 HOH HOH . F 5 HOH A 50 550 31 HOH HOH . F 5 HOH A 51 551 1 HOH HOH . F 5 HOH A 52 552 73 HOH HOH . F 5 HOH A 53 553 34 HOH HOH . F 5 HOH A 54 554 21 HOH HOH . F 5 HOH A 55 555 24 HOH HOH . F 5 HOH A 56 556 62 HOH HOH . F 5 HOH A 57 557 71 HOH HOH . F 5 HOH A 58 558 15 HOH HOH . F 5 HOH A 59 559 12 HOH HOH . F 5 HOH A 60 560 37 HOH HOH . F 5 HOH A 61 561 42 HOH HOH . F 5 HOH A 62 562 26 HOH HOH . F 5 HOH A 63 563 61 HOH HOH . F 5 HOH A 64 564 65 HOH HOH . F 5 HOH A 65 565 8 HOH HOH . F 5 HOH A 66 566 78 HOH HOH . F 5 HOH A 67 567 75 HOH HOH . F 5 HOH A 68 568 54 HOH HOH . F 5 HOH A 69 569 3 HOH HOH . F 5 HOH A 70 570 72 HOH HOH . F 5 HOH A 71 571 16 HOH HOH . F 5 HOH A 72 572 82 HOH HOH . F 5 HOH A 73 573 27 HOH HOH . F 5 HOH A 74 574 64 HOH HOH . F 5 HOH A 75 575 45 HOH HOH . F 5 HOH A 76 576 80 HOH HOH . F 5 HOH A 77 577 60 HOH HOH . F 5 HOH A 78 578 59 HOH HOH . F 5 HOH A 79 579 43 HOH HOH . F 5 HOH A 80 580 40 HOH HOH . F 5 HOH A 81 581 56 HOH HOH . F 5 HOH A 82 582 70 HOH HOH . F 5 HOH A 83 583 84 HOH HOH . F 5 HOH A 84 584 58 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -14.685 _atom_site.Cartn_y 22.973 _atom_site.Cartn_z -8.253 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #