data_5OSF # _model_server_result.job_id lLydSwJiSrrf31zxPBcaOA _model_server_result.datetime_utc '2025-02-17 11:23:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5osf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5OSF # _exptl.entry_id 5OSF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.333 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-ethylphenoxy)-1-piperidin-1-yl-ethanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OSF _cell.length_a 82.2 _cell.length_b 82.2 _cell.length_c 175.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OSF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 161 A THR 287 1_555 A N TPO 162 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C TPO 162 A TPO 288 1_555 A N LEU 163 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? metalc ? metalc1 A OD1 ASN 135 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 A OD2 ASP 148 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 A OD1 ASP 148 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc4 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc5 B O2A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc6 B O1B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 C MG MG . A MG 402 1_555 F O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc8 C MG MG . A MG 402 1_555 F O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc9 D MG MG . A MG 403 1_555 F O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc10 D MG MG . A MG 403 1_555 F O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc11 D MG MG . A MG 403 1_555 F O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? # _chem_comp.formula 'C15 H21 N O2' _chem_comp.formula_weight 247.333 _chem_comp.id A9E _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-ethylphenoxy)-1-piperidin-1-yl-ethanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C10 A9E doub 1 n n C15 C14 A9E sing 2 n n C15 N1 A9E sing 3 n n C10 N1 A9E sing 4 n n C10 C9 A9E sing 5 n n C14 C13 A9E sing 6 n n N1 C11 A9E sing 7 n n O1 C9 A9E sing 8 n n O1 C6 A9E sing 9 n n C13 C12 A9E sing 10 n n C12 C11 A9E sing 11 n n C6 C5 A9E doub 12 n y C6 C7 A9E sing 13 n y C5 C4 A9E sing 14 n y C7 C8 A9E doub 15 n y C4 C3 A9E doub 16 n y C8 C3 A9E sing 17 n y C3 C2 A9E sing 18 n n C1 C2 A9E sing 19 n n C15 H1 A9E sing 20 n n C15 H2 A9E sing 21 n n C12 H3 A9E sing 22 n n C12 H4 A9E sing 23 n n C13 H5 A9E sing 24 n n C13 H6 A9E sing 25 n n C14 H7 A9E sing 26 n n C14 H8 A9E sing 27 n n C11 H9 A9E sing 28 n n C11 H10 A9E sing 29 n n C9 H11 A9E sing 30 n n C9 H12 A9E sing 31 n n C8 H13 A9E sing 32 n n C7 H14 A9E sing 33 n n C4 H15 A9E sing 34 n n C5 H16 A9E sing 35 n n C2 H17 A9E sing 36 n n C2 H18 A9E sing 37 n n C1 H19 A9E sing 38 n n C1 H20 A9E sing 39 n n C1 H21 A9E sing 40 n n # _atom_sites.entry_id 5OSF _atom_sites.fract_transf_matrix[1][1] 0.012165 _atom_sites.fract_transf_matrix[1][2] 0.007024 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1392 ADP ADP . C 3 MG A 1 402 1395 MG MG . D 3 MG A 1 403 1396 MG MG . E 4 A9E A 1 404 1 A9E FRG . F 5 HOH A 1 501 68 HOH HOH . F 5 HOH A 2 502 48 HOH HOH . F 5 HOH A 3 503 38 HOH HOH . F 5 HOH A 4 504 66 HOH HOH . F 5 HOH A 5 505 29 HOH HOH . F 5 HOH A 6 506 5 HOH HOH . F 5 HOH A 7 507 57 HOH HOH . F 5 HOH A 8 508 49 HOH HOH . F 5 HOH A 9 509 19 HOH HOH . F 5 HOH A 10 510 44 HOH HOH . F 5 HOH A 11 511 69 HOH HOH . F 5 HOH A 12 512 6 HOH HOH . F 5 HOH A 13 513 22 HOH HOH . F 5 HOH A 14 514 77 HOH HOH . F 5 HOH A 15 515 17 HOH HOH . F 5 HOH A 16 516 67 HOH HOH . F 5 HOH A 17 517 41 HOH HOH . F 5 HOH A 18 518 74 HOH HOH . F 5 HOH A 19 519 14 HOH HOH . F 5 HOH A 20 520 33 HOH HOH . F 5 HOH A 21 521 46 HOH HOH . F 5 HOH A 22 522 23 HOH HOH . F 5 HOH A 23 523 79 HOH HOH . F 5 HOH A 24 524 28 HOH HOH . F 5 HOH A 25 525 9 HOH HOH . F 5 HOH A 26 526 30 HOH HOH . F 5 HOH A 27 527 55 HOH HOH . F 5 HOH A 28 528 39 HOH HOH . F 5 HOH A 29 529 32 HOH HOH . F 5 HOH A 30 530 47 HOH HOH . F 5 HOH A 31 531 13 HOH HOH . F 5 HOH A 32 532 10 HOH HOH . F 5 HOH A 33 533 11 HOH HOH . F 5 HOH A 34 534 51 HOH HOH . F 5 HOH A 35 535 50 HOH HOH . F 5 HOH A 36 536 63 HOH HOH . F 5 HOH A 37 537 20 HOH HOH . F 5 HOH A 38 538 35 HOH HOH . F 5 HOH A 39 539 81 HOH HOH . F 5 HOH A 40 540 18 HOH HOH . F 5 HOH A 41 541 36 HOH HOH . F 5 HOH A 42 542 4 HOH HOH . F 5 HOH A 43 543 52 HOH HOH . F 5 HOH A 44 544 25 HOH HOH . F 5 HOH A 45 545 53 HOH HOH . F 5 HOH A 46 546 2 HOH HOH . F 5 HOH A 47 547 83 HOH HOH . F 5 HOH A 48 548 7 HOH HOH . F 5 HOH A 49 549 76 HOH HOH . F 5 HOH A 50 550 31 HOH HOH . F 5 HOH A 51 551 1 HOH HOH . F 5 HOH A 52 552 73 HOH HOH . F 5 HOH A 53 553 34 HOH HOH . F 5 HOH A 54 554 21 HOH HOH . F 5 HOH A 55 555 24 HOH HOH . F 5 HOH A 56 556 62 HOH HOH . F 5 HOH A 57 557 71 HOH HOH . F 5 HOH A 58 558 15 HOH HOH . F 5 HOH A 59 559 12 HOH HOH . F 5 HOH A 60 560 37 HOH HOH . F 5 HOH A 61 561 42 HOH HOH . F 5 HOH A 62 562 26 HOH HOH . F 5 HOH A 63 563 61 HOH HOH . F 5 HOH A 64 564 65 HOH HOH . F 5 HOH A 65 565 8 HOH HOH . F 5 HOH A 66 566 78 HOH HOH . F 5 HOH A 67 567 75 HOH HOH . F 5 HOH A 68 568 54 HOH HOH . F 5 HOH A 69 569 3 HOH HOH . F 5 HOH A 70 570 72 HOH HOH . F 5 HOH A 71 571 16 HOH HOH . F 5 HOH A 72 572 82 HOH HOH . F 5 HOH A 73 573 27 HOH HOH . F 5 HOH A 74 574 64 HOH HOH . F 5 HOH A 75 575 45 HOH HOH . F 5 HOH A 76 576 80 HOH HOH . F 5 HOH A 77 577 60 HOH HOH . F 5 HOH A 78 578 59 HOH HOH . F 5 HOH A 79 579 43 HOH HOH . F 5 HOH A 80 580 40 HOH HOH . F 5 HOH A 81 581 56 HOH HOH . F 5 HOH A 82 582 70 HOH HOH . F 5 HOH A 83 583 84 HOH HOH . F 5 HOH A 84 584 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 A9E . . . E 4 -3.496 34.632 -25.228 1 75.79 ? C15 A9E 404 A 1 HETATM 2 C C12 A9E . . . E 4 -1.543 35.634 -23.516 1 76.05 ? C12 A9E 404 A 1 HETATM 3 C C13 A9E . . . E 4 -2.627 36.633 -23.924 1 76.09 ? C13 A9E 404 A 1 HETATM 4 C C14 A9E . . . E 4 -3.86 35.891 -24.476 1 76.03 ? C14 A9E 404 A 1 HETATM 5 C C11 A9E . . . E 4 -2.154 34.291 -23.17 1 75.77 ? C11 A9E 404 A 1 HETATM 6 C C10 A9E . . . E 4 -2.75 32.379 -24.747 1 74.82 ? C10 A9E 404 A 1 HETATM 7 C C9 A9E . . . E 4 -1.732 31.493 -24.029 1 73.92 ? C9 A9E 404 A 1 HETATM 8 C C8 A9E . . . E 4 0.428 29.17 -21.804 1 70.51 ? C8 A9E 404 A 1 HETATM 9 C C7 A9E . . . E 4 -0.391 29.884 -22.655 1 71.1 ? C7 A9E 404 A 1 HETATM 10 C C4 A9E . . . E 4 -0.51 27.129 -22.61 1 70.49 ? C4 A9E 404 A 1 HETATM 11 C C5 A9E . . . E 4 -1.328 27.835 -23.482 1 71.01 ? C5 A9E 404 A 1 HETATM 12 C C6 A9E . . . E 4 -1.268 29.227 -23.505 1 71.69 ? C6 A9E 404 A 1 HETATM 13 C C3 A9E . . . E 4 0.379 27.783 -21.755 1 70.11 ? C3 A9E 404 A 1 HETATM 14 C C2 A9E . . . E 4 1.294 27.016 -20.839 1 69.47 ? C2 A9E 404 A 1 HETATM 15 C C1 A9E . . . E 4 1.241 25.579 -21.187 1 69.26 ? C1 A9E 404 A 1 HETATM 16 O O1 A9E . . . E 4 -1.97 30.102 -24.291 1 72.88 ? O1 A9E 404 A 1 HETATM 17 O O2 A9E . . . E 4 -3.493 31.921 -25.623 1 75.05 ? O2 A9E 404 A 1 HETATM 18 N N1 A9E . . . E 4 -2.772 33.667 -24.376 1 75.48 ? N1 A9E 404 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #