data_5OSZ # _model_server_result.job_id m59SwpHHfgdcy73lrTTzNQ _model_server_result.datetime_utc '2024-11-24 10:51:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5osz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5OSZ # _exptl.entry_id 5OSZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.928 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1~{H}-benzimidazol-2-yl)ethyl-[[3-chloranyl-4-(2-ethylphenyl)phenyl]methyl]azanium _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.08 _cell.angle_gamma 90 _cell.entry_id 5OSZ _cell.length_a 59.623 _cell.length_b 45.492 _cell.length_c 63.784 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OSZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C24 H25 Cl N3 1' _chem_comp.formula_weight 390.928 _chem_comp.id AHK _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1~{H}-benzimidazol-2-yl)ethyl-[[3-chloranyl-4-(2-ethylphenyl)phenyl]methyl]azanium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 AHK doub 7 n y C17 C16 AHK sing 8 n y C18 C19 AHK sing 9 n y N1 C16 AHK sing 10 n y N1 C15 AHK doub 11 n y C16 C21 AHK doub 12 n y C19 C20 AHK doub 13 n y C15 C14 AHK sing 14 n n C15 N2 AHK sing 15 n y C21 C20 AHK sing 16 n y C21 N2 AHK sing 17 n y C14 C13 AHK sing 18 n n C5 C6 AHK doub 19 n y C5 C4 AHK sing 20 n y C6 C7 AHK sing 21 n y C13 N AHK sing 22 n n N C12 AHK sing 23 n n C10 C9 AHK doub 24 n y C10 C11 AHK sing 25 n y C9 C8 AHK sing 26 n y C4 C3 AHK doub 27 n y C12 C11 AHK sing 28 n n C7 C8 AHK sing 29 n n C7 C2 AHK doub 30 n y C11 C22 AHK doub 31 n y C8 C23 AHK doub 32 n y C23 C22 AHK sing 33 n y C23 CL AHK sing 34 n n C3 C2 AHK sing 35 n y C2 C1 AHK sing 36 n n C1 C AHK sing 37 n n C6 H1 AHK sing 38 n n C5 H2 AHK sing 39 n n C4 H3 AHK sing 40 n n C3 H4 AHK sing 41 n n C1 H5 AHK sing 42 n n C1 H6 AHK sing 43 n n C H7 AHK sing 44 n n C H8 AHK sing 45 n n C H9 AHK sing 46 n n C22 H10 AHK sing 47 n n C10 H11 AHK sing 48 n n C9 H12 AHK sing 49 n n C12 H13 AHK sing 50 n n C12 H14 AHK sing 51 n n N H15 AHK sing 52 n n C13 H17 AHK sing 53 n n C13 H18 AHK sing 54 n n C14 H19 AHK sing 55 n n C14 H20 AHK sing 56 n n N2 H21 AHK sing 57 n n C20 H23 AHK sing 58 n n C19 H24 AHK sing 59 n n C18 H25 AHK sing 60 n n C17 H26 AHK sing 61 n n N H16 AHK sing 62 n n # _atom_sites.entry_id 5OSZ _atom_sites.fract_transf_matrix[1][1] 0.016772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006465 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021982 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 1 ACT ACT . C 2 ACT A 1 402 2 ACT ACT . D 3 AHK A 1 403 1 AHK M27 . E 3 AHK A 1 404 2 AHK M27 . F 3 AHK A 1 405 3 AHK M27 . G 4 HOH A 1 501 32 HOH HOH . G 4 HOH A 2 502 170 HOH HOH . G 4 HOH A 3 503 33 HOH HOH . G 4 HOH A 4 504 3 HOH HOH . G 4 HOH A 5 505 67 HOH HOH . G 4 HOH A 6 506 23 HOH HOH . G 4 HOH A 7 507 19 HOH HOH . G 4 HOH A 8 508 78 HOH HOH . G 4 HOH A 9 509 45 HOH HOH . G 4 HOH A 10 510 101 HOH HOH . G 4 HOH A 11 511 112 HOH HOH . G 4 HOH A 12 512 76 HOH HOH . G 4 HOH A 13 513 47 HOH HOH . G 4 HOH A 14 514 148 HOH HOH . G 4 HOH A 15 515 60 HOH HOH . G 4 HOH A 16 516 70 HOH HOH . G 4 HOH A 17 517 7 HOH HOH . G 4 HOH A 18 518 190 HOH HOH . G 4 HOH A 19 519 10 HOH HOH . G 4 HOH A 20 520 158 HOH HOH . G 4 HOH A 21 521 110 HOH HOH . G 4 HOH A 22 522 192 HOH HOH . G 4 HOH A 23 523 122 HOH HOH . G 4 HOH A 24 524 181 HOH HOH . G 4 HOH A 25 525 149 HOH HOH . G 4 HOH A 26 526 96 HOH HOH . G 4 HOH A 27 527 6 HOH HOH . G 4 HOH A 28 528 13 HOH HOH . G 4 HOH A 29 529 162 HOH HOH . G 4 HOH A 30 530 77 HOH HOH . G 4 HOH A 31 531 82 HOH HOH . G 4 HOH A 32 532 124 HOH HOH . G 4 HOH A 33 533 74 HOH HOH . G 4 HOH A 34 534 113 HOH HOH . G 4 HOH A 35 535 40 HOH HOH . G 4 HOH A 36 536 69 HOH HOH . G 4 HOH A 37 537 38 HOH HOH . G 4 HOH A 38 538 4 HOH HOH . G 4 HOH A 39 539 197 HOH HOH . G 4 HOH A 40 540 5 HOH HOH . G 4 HOH A 41 541 91 HOH HOH . G 4 HOH A 42 542 46 HOH HOH . G 4 HOH A 43 543 62 HOH HOH . G 4 HOH A 44 544 123 HOH HOH . G 4 HOH A 45 545 73 HOH HOH . G 4 HOH A 46 546 1 HOH HOH . G 4 HOH A 47 547 137 HOH HOH . G 4 HOH A 48 548 95 HOH HOH . G 4 HOH A 49 549 51 HOH HOH . G 4 HOH A 50 550 93 HOH HOH . G 4 HOH A 51 551 90 HOH HOH . G 4 HOH A 52 552 80 HOH HOH . G 4 HOH A 53 553 109 HOH HOH . G 4 HOH A 54 554 195 HOH HOH . G 4 HOH A 55 555 140 HOH HOH . G 4 HOH A 56 556 48 HOH HOH . G 4 HOH A 57 557 9 HOH HOH . G 4 HOH A 58 558 30 HOH HOH . G 4 HOH A 59 559 150 HOH HOH . G 4 HOH A 60 560 49 HOH HOH . G 4 HOH A 61 561 184 HOH HOH . G 4 HOH A 62 562 185 HOH HOH . G 4 HOH A 63 563 87 HOH HOH . G 4 HOH A 64 564 179 HOH HOH . G 4 HOH A 65 565 26 HOH HOH . G 4 HOH A 66 566 105 HOH HOH . G 4 HOH A 67 567 107 HOH HOH . G 4 HOH A 68 568 100 HOH HOH . G 4 HOH A 69 569 75 HOH HOH . G 4 HOH A 70 570 103 HOH HOH . G 4 HOH A 71 571 15 HOH HOH . G 4 HOH A 72 572 164 HOH HOH . G 4 HOH A 73 573 79 HOH HOH . G 4 HOH A 74 574 41 HOH HOH . G 4 HOH A 75 575 132 HOH HOH . G 4 HOH A 76 576 37 HOH HOH . G 4 HOH A 77 577 12 HOH HOH . G 4 HOH A 78 578 136 HOH HOH . G 4 HOH A 79 579 145 HOH HOH . G 4 HOH A 80 580 64 HOH HOH . G 4 HOH A 81 581 152 HOH HOH . G 4 HOH A 82 582 94 HOH HOH . G 4 HOH A 83 583 159 HOH HOH . G 4 HOH A 84 584 16 HOH HOH . G 4 HOH A 85 585 167 HOH HOH . G 4 HOH A 86 586 117 HOH HOH . G 4 HOH A 87 587 126 HOH HOH . G 4 HOH A 88 588 135 HOH HOH . G 4 HOH A 89 589 199 HOH HOH . G 4 HOH A 90 590 11 HOH HOH . G 4 HOH A 91 591 130 HOH HOH . G 4 HOH A 92 592 178 HOH HOH . G 4 HOH A 93 593 99 HOH HOH . G 4 HOH A 94 594 196 HOH HOH . G 4 HOH A 95 595 92 HOH HOH . G 4 HOH A 96 596 129 HOH HOH . G 4 HOH A 97 597 85 HOH HOH . G 4 HOH A 98 598 14 HOH HOH . G 4 HOH A 99 599 56 HOH HOH . G 4 HOH A 100 600 131 HOH HOH . G 4 HOH A 101 601 27 HOH HOH . G 4 HOH A 102 602 191 HOH HOH . G 4 HOH A 103 603 156 HOH HOH . G 4 HOH A 104 604 97 HOH HOH . G 4 HOH A 105 605 125 HOH HOH . G 4 HOH A 106 606 183 HOH HOH . G 4 HOH A 107 607 17 HOH HOH . G 4 HOH A 108 608 138 HOH HOH . G 4 HOH A 109 609 57 HOH HOH . G 4 HOH A 110 610 42 HOH HOH . G 4 HOH A 111 611 61 HOH HOH . G 4 HOH A 112 612 52 HOH HOH . G 4 HOH A 113 613 146 HOH HOH . G 4 HOH A 114 614 106 HOH HOH . G 4 HOH A 115 615 53 HOH HOH . G 4 HOH A 116 616 198 HOH HOH . G 4 HOH A 117 617 98 HOH HOH . G 4 HOH A 118 618 163 HOH HOH . G 4 HOH A 119 619 127 HOH HOH . G 4 HOH A 120 620 160 HOH HOH . G 4 HOH A 121 621 151 HOH HOH . G 4 HOH A 122 622 200 HOH HOH . G 4 HOH A 123 623 154 HOH HOH . G 4 HOH A 124 624 193 HOH HOH . G 4 HOH A 125 625 58 HOH HOH . G 4 HOH A 126 626 66 HOH HOH . G 4 HOH A 127 627 83 HOH HOH . G 4 HOH A 128 628 176 HOH HOH . G 4 HOH A 129 629 20 HOH HOH . G 4 HOH A 130 630 180 HOH HOH . G 4 HOH A 131 631 175 HOH HOH . G 4 HOH A 132 632 102 HOH HOH . G 4 HOH A 133 633 43 HOH HOH . G 4 HOH A 134 634 114 HOH HOH . G 4 HOH A 135 635 8 HOH HOH . G 4 HOH A 136 636 84 HOH HOH . G 4 HOH A 137 637 161 HOH HOH . G 4 HOH A 138 638 189 HOH HOH . G 4 HOH A 139 639 144 HOH HOH . G 4 HOH A 140 640 141 HOH HOH . G 4 HOH A 141 641 128 HOH HOH . G 4 HOH A 142 642 139 HOH HOH . G 4 HOH A 143 643 172 HOH HOH . G 4 HOH A 144 644 186 HOH HOH . G 4 HOH A 145 645 115 HOH HOH . G 4 HOH A 146 646 188 HOH HOH . G 4 HOH A 147 647 142 HOH HOH . G 4 HOH A 148 648 116 HOH HOH . G 4 HOH A 149 649 29 HOH HOH . G 4 HOH A 150 650 111 HOH HOH . G 4 HOH A 151 651 2 HOH HOH . G 4 HOH A 152 652 39 HOH HOH . G 4 HOH A 153 653 171 HOH HOH . G 4 HOH A 154 654 187 HOH HOH . G 4 HOH A 155 655 81 HOH HOH . G 4 HOH A 156 656 143 HOH HOH . G 4 HOH A 157 657 169 HOH HOH . G 4 HOH A 158 658 71 HOH HOH . G 4 HOH A 159 659 153 HOH HOH . G 4 HOH A 160 660 173 HOH HOH . G 4 HOH A 161 661 59 HOH HOH . G 4 HOH A 162 662 55 HOH HOH . G 4 HOH A 163 663 108 HOH HOH . G 4 HOH A 164 664 35 HOH HOH . G 4 HOH A 165 665 157 HOH HOH . G 4 HOH A 166 666 119 HOH HOH . G 4 HOH A 167 667 177 HOH HOH . G 4 HOH A 168 668 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL AHK . . . F 3 -99.447 -198.041 288.107 1 43.43 ? CL AHK 405 A 1 HETATM 2 C C23 AHK . . . F 3 -99.539 -197.879 289.831 1 39.15 ? C23 AHK 405 A 1 HETATM 3 C C8 AHK . . . F 3 -98.837 -198.755 290.665 1 36.22 ? C8 AHK 405 A 1 HETATM 4 C C7 AHK . . . F 3 -97.87 -199.778 290.158 1 31.69 ? C7 AHK 405 A 1 HETATM 5 C C6 AHK . . . F 3 -96.722 -199.314 289.511 1 30.67 ? C6 AHK 405 A 1 HETATM 6 C C5 AHK . . . F 3 -95.769 -200.2 289.04 1 28.69 ? C5 AHK 405 A 1 HETATM 7 C C4 AHK . . . F 3 -95.956 -201.559 289.186 1 26.52 ? C4 AHK 405 A 1 HETATM 8 C C3 AHK . . . F 3 -97.093 -202.039 289.808 1 27.49 ? C3 AHK 405 A 1 HETATM 9 C C2 AHK . . . F 3 -98.055 -201.165 290.314 1 30.27 ? C2 AHK 405 A 1 HETATM 10 C C1 AHK . . . F 3 -99.254 -201.753 291.027 1 35.35 ? C1 AHK 405 A 1 HETATM 11 C C AHK . . . F 3 -100.56 -201.617 290.271 1 39.96 ? C AHK 405 A 1 HETATM 12 C C22 AHK . . . F 3 -100.377 -196.908 290.343 1 38.48 ? C22 AHK 405 A 1 HETATM 13 C C11 AHK . . . F 3 -100.565 -196.792 291.715 1 38.19 ? C11 AHK 405 A 1 HETATM 14 C C10 AHK . . . F 3 -99.915 -197.688 292.548 1 37.23 ? C10 AHK 405 A 1 HETATM 15 C C9 AHK . . . F 3 -99.056 -198.648 292.04 1 37.68 ? C9 AHK 405 A 1 HETATM 16 C C12 AHK . . . F 3 -101.392 -195.671 292.295 1 38.65 ? C12 AHK 405 A 1 HETATM 17 N N AHK . . . F 3 -100.681 -194.939 293.354 1 37.49 ? N AHK 405 A 1 HETATM 18 C C13 AHK . . . F 3 -99.79 -193.894 292.842 1 34.93 ? C13 AHK 405 A 1 HETATM 19 C C14 AHK . . . F 3 -99.214 -193.12 294.016 1 32 ? C14 AHK 405 A 1 HETATM 20 C C15 AHK . . . F 3 -98.428 -191.935 293.567 1 33.92 ? C15 AHK 405 A 1 HETATM 21 N N2 AHK . . . F 3 -97.459 -191.972 292.672 1 34.61 ? N2 AHK 405 A 1 HETATM 22 C C21 AHK . . . F 3 -96.988 -190.66 292.595 1 32.47 ? C21 AHK 405 A 1 HETATM 23 C C16 AHK . . . F 3 -97.716 -189.854 293.466 1 33.05 ? C16 AHK 405 A 1 HETATM 24 N N1 AHK . . . F 3 -98.632 -190.696 294.072 1 33.98 ? N1 AHK 405 A 1 HETATM 25 C C20 AHK . . . F 3 -95.938 -190.111 291.861 1 31.35 ? C20 AHK 405 A 1 HETATM 26 C C19 AHK . . . F 3 -95.637 -188.765 292.022 1 33.04 ? C19 AHK 405 A 1 HETATM 27 C C18 AHK . . . F 3 -96.374 -187.969 292.9 1 32.01 ? C18 AHK 405 A 1 HETATM 28 C C17 AHK . . . F 3 -97.426 -188.505 293.629 1 32.91 ? C17 AHK 405 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #