data_5OT0 # _model_server_result.job_id EmGbfIYvBapLPhA_aNPA4Q _model_server_result.datetime_utc '2025-03-13 20:55:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ot0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":402}' # _entry.id 5OT0 # _exptl.entry_id 5OT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 72.13 _cell.angle_beta 76.22 _cell.angle_gamma 87.83 _cell.entry_id 5OT0 _cell.length_a 70.74 _cell.length_b 70.96 _cell.length_c 107.73 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,T,U 1 1 C,D,M,N,O,P,V,W 2 1 E,F,Q,R,S,X,Y 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 J N N ? 3 K N N ? 3 O N N ? 3 P N N ? 3 S N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 5OT0 _atom_sites.fract_transf_matrix[1][1] 0.014136 _atom_sites.fract_transf_matrix[1][2] -0.000536 _atom_sites.fract_transf_matrix[1][3] -0.00347 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014103 _atom_sites.fract_transf_matrix[2][3] -0.004547 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010042 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PO4 A 1 401 401 PO4 PO4 . H 3 EDO A 1 402 402 EDO EDO . I 2 PO4 B 1 401 401 PO4 PO4 . J 3 EDO B 1 402 402 EDO EDO . K 3 EDO B 1 403 403 EDO EDO . L 4 PG4 B 1 404 404 PG4 PG4 . M 2 PO4 C 1 401 401 PO4 PO4 . N 2 PO4 D 1 401 401 PO4 PO4 . O 3 EDO D 1 402 402 EDO EDO . P 3 EDO D 1 403 403 EDO EDO . Q 2 PO4 E 1 401 401 PO4 PO4 . R 2 PO4 F 1 401 401 PO4 PO4 . S 3 EDO F 1 402 402 EDO EDO . T 5 HOH A 1 501 546 HOH HOH . T 5 HOH A 2 502 543 HOH HOH . T 5 HOH A 3 503 551 HOH HOH . T 5 HOH A 4 504 506 HOH HOH . T 5 HOH A 5 505 510 HOH HOH . T 5 HOH A 6 506 527 HOH HOH . T 5 HOH A 7 507 505 HOH HOH . T 5 HOH A 8 508 555 HOH HOH . T 5 HOH A 9 509 528 HOH HOH . T 5 HOH A 10 510 548 HOH HOH . T 5 HOH A 11 511 534 HOH HOH . T 5 HOH A 12 512 540 HOH HOH . T 5 HOH A 13 513 516 HOH HOH . T 5 HOH A 14 514 511 HOH HOH . T 5 HOH A 15 515 554 HOH HOH . T 5 HOH A 16 516 517 HOH HOH . T 5 HOH A 17 517 520 HOH HOH . T 5 HOH A 18 518 553 HOH HOH . T 5 HOH A 19 519 538 HOH HOH . T 5 HOH A 20 520 545 HOH HOH . T 5 HOH A 21 521 535 HOH HOH . T 5 HOH A 22 522 502 HOH HOH . T 5 HOH A 23 523 549 HOH HOH . T 5 HOH A 24 524 524 HOH HOH . T 5 HOH A 25 525 537 HOH HOH . T 5 HOH A 26 526 523 HOH HOH . T 5 HOH A 27 527 507 HOH HOH . T 5 HOH A 28 528 533 HOH HOH . T 5 HOH A 29 529 539 HOH HOH . T 5 HOH A 30 530 526 HOH HOH . T 5 HOH A 31 531 504 HOH HOH . T 5 HOH A 32 532 542 HOH HOH . T 5 HOH A 33 533 518 HOH HOH . T 5 HOH A 34 534 509 HOH HOH . T 5 HOH A 35 535 525 HOH HOH . T 5 HOH A 36 536 552 HOH HOH . T 5 HOH A 37 537 512 HOH HOH . T 5 HOH A 38 538 522 HOH HOH . T 5 HOH A 39 539 503 HOH HOH . T 5 HOH A 40 540 536 HOH HOH . T 5 HOH A 41 541 501 HOH HOH . T 5 HOH A 42 542 515 HOH HOH . T 5 HOH A 43 543 541 HOH HOH . T 5 HOH A 44 544 547 HOH HOH . T 5 HOH A 45 545 508 HOH HOH . T 5 HOH A 46 546 521 HOH HOH . T 5 HOH A 47 547 519 HOH HOH . T 5 HOH A 48 548 531 HOH HOH . T 5 HOH A 49 549 514 HOH HOH . T 5 HOH A 50 550 530 HOH HOH . T 5 HOH A 51 551 529 HOH HOH . T 5 HOH A 52 552 532 HOH HOH . T 5 HOH A 53 553 550 HOH HOH . T 5 HOH A 54 554 544 HOH HOH . T 5 HOH A 55 555 513 HOH HOH . U 5 HOH B 1 501 534 HOH HOH . U 5 HOH B 2 502 532 HOH HOH . U 5 HOH B 3 503 533 HOH HOH . U 5 HOH B 4 504 544 HOH HOH . U 5 HOH B 5 505 517 HOH HOH . U 5 HOH B 6 506 526 HOH HOH . U 5 HOH B 7 507 529 HOH HOH . U 5 HOH B 8 508 531 HOH HOH . U 5 HOH B 9 509 512 HOH HOH . U 5 HOH B 10 510 511 HOH HOH . U 5 HOH B 11 511 527 HOH HOH . U 5 HOH B 12 512 502 HOH HOH . U 5 HOH B 13 513 519 HOH HOH . U 5 HOH B 14 514 503 HOH HOH . U 5 HOH B 15 515 505 HOH HOH . U 5 HOH B 16 516 521 HOH HOH . U 5 HOH B 17 517 518 HOH HOH . U 5 HOH B 18 518 508 HOH HOH . U 5 HOH B 19 519 556 HOH HOH . U 5 HOH B 20 520 506 HOH HOH . U 5 HOH B 21 521 540 HOH HOH . U 5 HOH B 22 522 541 HOH HOH . U 5 HOH B 23 523 547 HOH HOH . U 5 HOH B 24 524 501 HOH HOH . U 5 HOH B 25 525 507 HOH HOH . U 5 HOH B 26 526 543 HOH HOH . U 5 HOH B 27 527 504 HOH HOH . U 5 HOH B 28 528 542 HOH HOH . U 5 HOH B 29 529 524 HOH HOH . U 5 HOH B 30 530 520 HOH HOH . U 5 HOH B 31 531 515 HOH HOH . U 5 HOH B 32 532 545 HOH HOH . U 5 HOH B 33 533 525 HOH HOH . U 5 HOH B 34 534 546 HOH HOH . U 5 HOH B 35 535 530 HOH HOH . U 5 HOH B 36 536 557 HOH HOH . U 5 HOH B 37 537 509 HOH HOH . U 5 HOH B 38 538 539 HOH HOH . U 5 HOH B 39 539 516 HOH HOH . U 5 HOH B 40 540 535 HOH HOH . U 5 HOH B 41 541 514 HOH HOH . U 5 HOH B 42 542 510 HOH HOH . U 5 HOH B 43 543 537 HOH HOH . U 5 HOH B 44 544 522 HOH HOH . U 5 HOH B 45 545 528 HOH HOH . U 5 HOH B 46 546 538 HOH HOH . U 5 HOH B 47 547 536 HOH HOH . U 5 HOH B 48 548 513 HOH HOH . U 5 HOH B 49 549 523 HOH HOH . V 5 HOH C 1 501 516 HOH HOH . V 5 HOH C 2 502 521 HOH HOH . V 5 HOH C 3 503 527 HOH HOH . V 5 HOH C 4 504 502 HOH HOH . V 5 HOH C 5 505 503 HOH HOH . V 5 HOH C 6 506 501 HOH HOH . V 5 HOH C 7 507 512 HOH HOH . V 5 HOH C 8 508 522 HOH HOH . V 5 HOH C 9 509 514 HOH HOH . V 5 HOH C 10 510 509 HOH HOH . V 5 HOH C 11 511 506 HOH HOH . V 5 HOH C 12 512 505 HOH HOH . V 5 HOH C 13 513 504 HOH HOH . V 5 HOH C 14 514 533 HOH HOH . V 5 HOH C 15 515 532 HOH HOH . V 5 HOH C 16 516 513 HOH HOH . V 5 HOH C 17 517 517 HOH HOH . V 5 HOH C 18 518 520 HOH HOH . V 5 HOH C 19 519 515 HOH HOH . V 5 HOH C 20 520 510 HOH HOH . V 5 HOH C 21 521 523 HOH HOH . V 5 HOH C 22 522 526 HOH HOH . V 5 HOH C 23 523 525 HOH HOH . V 5 HOH C 24 524 535 HOH HOH . V 5 HOH C 25 525 528 HOH HOH . V 5 HOH C 26 526 531 HOH HOH . V 5 HOH C 27 527 530 HOH HOH . V 5 HOH C 28 528 524 HOH HOH . V 5 HOH C 29 529 529 HOH HOH . V 5 HOH C 30 530 519 HOH HOH . V 5 HOH C 31 531 511 HOH HOH . V 5 HOH C 32 532 518 HOH HOH . V 5 HOH C 33 533 508 HOH HOH . V 5 HOH C 34 534 507 HOH HOH . V 5 HOH C 35 535 531 HOH HOH . W 5 HOH D 1 501 543 HOH HOH . W 5 HOH D 2 502 540 HOH HOH . W 5 HOH D 3 503 510 HOH HOH . W 5 HOH D 4 504 528 HOH HOH . W 5 HOH D 5 505 544 HOH HOH . W 5 HOH D 6 506 542 HOH HOH . W 5 HOH D 7 507 504 HOH HOH . W 5 HOH D 8 508 514 HOH HOH . W 5 HOH D 9 509 524 HOH HOH . W 5 HOH D 10 510 534 HOH HOH . W 5 HOH D 11 511 511 HOH HOH . W 5 HOH D 12 512 507 HOH HOH . W 5 HOH D 13 513 541 HOH HOH . W 5 HOH D 14 514 512 HOH HOH . W 5 HOH D 15 515 523 HOH HOH . W 5 HOH D 16 516 529 HOH HOH . W 5 HOH D 17 517 546 HOH HOH . W 5 HOH D 18 518 527 HOH HOH . W 5 HOH D 19 519 525 HOH HOH . W 5 HOH D 20 520 508 HOH HOH . W 5 HOH D 21 521 502 HOH HOH . W 5 HOH D 22 522 538 HOH HOH . W 5 HOH D 23 523 501 HOH HOH . W 5 HOH D 24 524 532 HOH HOH . W 5 HOH D 25 525 506 HOH HOH . W 5 HOH D 26 526 520 HOH HOH . W 5 HOH D 27 527 545 HOH HOH . W 5 HOH D 28 528 503 HOH HOH . W 5 HOH D 29 529 521 HOH HOH . W 5 HOH D 30 530 509 HOH HOH . W 5 HOH D 31 531 539 HOH HOH . W 5 HOH D 32 532 534 HOH HOH . W 5 HOH D 33 533 516 HOH HOH . W 5 HOH D 34 534 526 HOH HOH . W 5 HOH D 35 535 518 HOH HOH . W 5 HOH D 36 536 530 HOH HOH . W 5 HOH D 37 537 537 HOH HOH . W 5 HOH D 38 538 505 HOH HOH . W 5 HOH D 39 539 522 HOH HOH . W 5 HOH D 40 540 515 HOH HOH . W 5 HOH D 41 541 517 HOH HOH . W 5 HOH D 42 542 513 HOH HOH . W 5 HOH D 43 543 519 HOH HOH . W 5 HOH D 44 544 533 HOH HOH . W 5 HOH D 45 545 536 HOH HOH . W 5 HOH D 46 546 535 HOH HOH . X 5 HOH E 1 501 515 HOH HOH . X 5 HOH E 2 502 523 HOH HOH . X 5 HOH E 3 503 517 HOH HOH . X 5 HOH E 4 504 508 HOH HOH . X 5 HOH E 5 505 510 HOH HOH . X 5 HOH E 6 506 525 HOH HOH . X 5 HOH E 7 507 503 HOH HOH . X 5 HOH E 8 508 521 HOH HOH . X 5 HOH E 9 509 502 HOH HOH . X 5 HOH E 10 510 511 HOH HOH . X 5 HOH E 11 511 524 HOH HOH . X 5 HOH E 12 512 509 HOH HOH . X 5 HOH E 13 513 512 HOH HOH . X 5 HOH E 14 514 518 HOH HOH . X 5 HOH E 15 515 516 HOH HOH . X 5 HOH E 16 516 505 HOH HOH . X 5 HOH E 17 517 520 HOH HOH . X 5 HOH E 18 518 513 HOH HOH . X 5 HOH E 19 519 504 HOH HOH . X 5 HOH E 20 520 514 HOH HOH . X 5 HOH E 21 521 506 HOH HOH . X 5 HOH E 22 522 501 HOH HOH . X 5 HOH E 23 523 507 HOH HOH . X 5 HOH E 24 524 519 HOH HOH . X 5 HOH E 25 525 522 HOH HOH . Y 5 HOH F 1 501 513 HOH HOH . Y 5 HOH F 2 502 501 HOH HOH . Y 5 HOH F 3 503 505 HOH HOH . Y 5 HOH F 4 504 511 HOH HOH . Y 5 HOH F 5 505 509 HOH HOH . Y 5 HOH F 6 506 504 HOH HOH . Y 5 HOH F 7 507 503 HOH HOH . Y 5 HOH F 8 508 512 HOH HOH . Y 5 HOH F 9 509 502 HOH HOH . Y 5 HOH F 10 510 508 HOH HOH . Y 5 HOH F 11 511 507 HOH HOH . Y 5 HOH F 12 512 506 HOH HOH . Y 5 HOH F 13 513 510 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . S 3 -7.116 57.116 -48.436 1 72.2 ? C1 EDO 402 F 1 HETATM 2 O O1 EDO . . . S 3 -8.552 57.192 -48.297 1 68.97 ? O1 EDO 402 F 1 HETATM 3 C C2 EDO . . . S 3 -6.705 55.791 -49.049 1 72.94 ? C2 EDO 402 F 1 HETATM 4 O O2 EDO . . . S 3 -6.382 55.884 -50.461 1 75.34 ? O2 EDO 402 F 1 # _model_server_stats.io_time_ms 142 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #