data_5OT3 # _model_server_result.job_id g6VwoXoxtxBOlNsLc_r43Q _model_server_result.datetime_utc '2024-11-25 16:12:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ot3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5OT3 # _exptl.entry_id 5OT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.309 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2-[(4-isoquinolin-5-ylsulfonyl-1,4-diazepan-1-yl)methyl]phenyl]boronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OT3 _cell.length_a 69.21 _cell.length_b 72.752 _cell.length_c 76.925 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale7 B OG SER 17 D SER 24 1_555 E C1 RIP . D RIP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? # _chem_comp.formula 'C21 H24 B N3 O4 S' _chem_comp.formula_weight 425.309 _chem_comp.id 9LQ _chem_comp.mon_nstd_flag . _chem_comp.name '[2-[(4-isoquinolin-5-ylsulfonyl-1,4-diazepan-1-yl)methyl]phenyl]boronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 9LQ sing 1 n n C10 C11 9LQ sing 2 n n C9 N1 9LQ sing 3 n n C11 N2 9LQ sing 4 n n O3 S 9LQ doub 5 n n N1 S 9LQ sing 6 n n N1 C20 9LQ sing 7 n n N2 C12 9LQ sing 8 n n N2 C19 9LQ sing 9 n n O2 B 9LQ sing 10 n n C12 C13 9LQ sing 11 n n S C 9LQ sing 12 n n S O 9LQ doub 13 n n O1 B 9LQ sing 14 n n B C18 9LQ sing 15 n n C20 C19 9LQ sing 16 n n C1 C 9LQ doub 17 n y C1 C2 9LQ sing 18 n y C C5 9LQ sing 19 n y C2 C3 9LQ doub 20 n y C5 C6 9LQ doub 21 n y C5 C4 9LQ sing 22 n y C3 C4 9LQ sing 23 n y C6 C7 9LQ sing 24 n y C4 C8 9LQ doub 25 n y C13 C18 9LQ doub 26 n y C13 C14 9LQ sing 27 n y C7 N 9LQ doub 28 n y C18 C17 9LQ sing 29 n y C8 N 9LQ sing 30 n y C14 C15 9LQ doub 31 n y C17 C16 9LQ doub 32 n y C15 C16 9LQ sing 33 n y C1 H 9LQ sing 34 n n C2 H1 9LQ sing 35 n n C3 H2 9LQ sing 36 n n C6 H3 9LQ sing 37 n n O2 H19 9LQ sing 38 n n C7 H4 9LQ sing 39 n n C8 H5 9LQ sing 40 n n C20 H22 9LQ sing 41 n n C20 H23 9LQ sing 42 n n C19 H20 9LQ sing 43 n n C19 H21 9LQ sing 44 n n C11 H11 9LQ sing 45 n n C11 H10 9LQ sing 46 n n C10 H8 9LQ sing 47 n n C10 H9 9LQ sing 48 n n C9 H7 9LQ sing 49 n n C9 H6 9LQ sing 50 n n C12 H13 9LQ sing 51 n n C12 H12 9LQ sing 52 n n O1 H18 9LQ sing 53 n n C17 H17 9LQ sing 54 n n C16 H16 9LQ sing 55 n n C15 H15 9LQ sing 56 n n C14 H14 9LQ sing 57 n n # _atom_sites.entry_id 5OT3 _atom_sites.fract_transf_matrix[1][1] 0.014449 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 9LQ A 1 401 1 9LQ BFS . D 4 MPD A 1 402 1 MPD MPD . E 5 RIP D 1 101 1 RIP RIB . F 6 CL D 1 102 1 CL CL . G 7 HOH A 1 501 31 HOH HOH . G 7 HOH A 2 502 93 HOH HOH . G 7 HOH A 3 503 61 HOH HOH . G 7 HOH A 4 504 67 HOH HOH . G 7 HOH A 5 505 11 HOH HOH . G 7 HOH A 6 506 102 HOH HOH . G 7 HOH A 7 507 17 HOH HOH . G 7 HOH A 8 508 27 HOH HOH . G 7 HOH A 9 509 96 HOH HOH . G 7 HOH A 10 510 13 HOH HOH . G 7 HOH A 11 511 63 HOH HOH . G 7 HOH A 12 512 46 HOH HOH . G 7 HOH A 13 513 109 HOH HOH . G 7 HOH A 14 514 85 HOH HOH . G 7 HOH A 15 515 110 HOH HOH . G 7 HOH A 16 516 60 HOH HOH . G 7 HOH A 17 517 72 HOH HOH . G 7 HOH A 18 518 4 HOH HOH . G 7 HOH A 19 519 124 HOH HOH . G 7 HOH A 20 520 3 HOH HOH . G 7 HOH A 21 521 25 HOH HOH . G 7 HOH A 22 522 105 HOH HOH . G 7 HOH A 23 523 38 HOH HOH . G 7 HOH A 24 524 18 HOH HOH . G 7 HOH A 25 525 92 HOH HOH . G 7 HOH A 26 526 8 HOH HOH . G 7 HOH A 27 527 45 HOH HOH . G 7 HOH A 28 528 66 HOH HOH . G 7 HOH A 29 529 10 HOH HOH . G 7 HOH A 30 530 121 HOH HOH . G 7 HOH A 31 531 91 HOH HOH . G 7 HOH A 32 532 64 HOH HOH . G 7 HOH A 33 533 98 HOH HOH . G 7 HOH A 34 534 2 HOH HOH . G 7 HOH A 35 535 44 HOH HOH . G 7 HOH A 36 536 12 HOH HOH . G 7 HOH A 37 537 115 HOH HOH . G 7 HOH A 38 538 39 HOH HOH . G 7 HOH A 39 539 33 HOH HOH . G 7 HOH A 40 540 32 HOH HOH . G 7 HOH A 41 541 54 HOH HOH . G 7 HOH A 42 542 73 HOH HOH . G 7 HOH A 43 543 95 HOH HOH . G 7 HOH A 44 544 26 HOH HOH . G 7 HOH A 45 545 23 HOH HOH . G 7 HOH A 46 546 14 HOH HOH . G 7 HOH A 47 547 48 HOH HOH . G 7 HOH A 48 548 7 HOH HOH . G 7 HOH A 49 549 104 HOH HOH . G 7 HOH A 50 550 52 HOH HOH . G 7 HOH A 51 551 50 HOH HOH . G 7 HOH A 52 552 78 HOH HOH . G 7 HOH A 53 553 107 HOH HOH . G 7 HOH A 54 554 21 HOH HOH . G 7 HOH A 55 555 9 HOH HOH . G 7 HOH A 56 556 83 HOH HOH . G 7 HOH A 57 557 69 HOH HOH . G 7 HOH A 58 558 76 HOH HOH . G 7 HOH A 59 559 30 HOH HOH . G 7 HOH A 60 560 43 HOH HOH . G 7 HOH A 61 561 103 HOH HOH . G 7 HOH A 62 562 94 HOH HOH . G 7 HOH A 63 563 90 HOH HOH . G 7 HOH A 64 564 34 HOH HOH . G 7 HOH A 65 565 88 HOH HOH . G 7 HOH A 66 566 59 HOH HOH . G 7 HOH A 67 567 77 HOH HOH . G 7 HOH A 68 568 86 HOH HOH . G 7 HOH A 69 569 71 HOH HOH . G 7 HOH A 70 570 15 HOH HOH . G 7 HOH A 71 571 99 HOH HOH . G 7 HOH A 72 572 101 HOH HOH . G 7 HOH A 73 573 41 HOH HOH . G 7 HOH A 74 574 36 HOH HOH . G 7 HOH A 75 575 70 HOH HOH . G 7 HOH A 76 576 22 HOH HOH . G 7 HOH A 77 577 53 HOH HOH . G 7 HOH A 78 578 16 HOH HOH . G 7 HOH A 79 579 80 HOH HOH . G 7 HOH A 80 580 79 HOH HOH . G 7 HOH A 81 581 89 HOH HOH . G 7 HOH A 82 582 82 HOH HOH . G 7 HOH A 83 583 37 HOH HOH . G 7 HOH A 84 584 29 HOH HOH . G 7 HOH A 85 585 62 HOH HOH . H 7 HOH D 1 201 28 HOH HOH . H 7 HOH D 2 202 6 HOH HOH . H 7 HOH D 3 203 112 HOH HOH . H 7 HOH D 4 204 74 HOH HOH . H 7 HOH D 5 205 122 HOH HOH . H 7 HOH D 6 206 123 HOH HOH . H 7 HOH D 7 207 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9LQ . . . C 3 9.483 13.147 7.521 1 32.39 ? C1 9LQ 401 A 1 HETATM 2 C C2 9LQ . . . C 3 10.689 13.797 7.323 1 34.36 ? C2 9LQ 401 A 1 HETATM 3 C C3 9LQ . . . C 3 11.835 13.09 7.108 1 39.07 ? C3 9LQ 401 A 1 HETATM 4 C C4 9LQ . . . C 3 11.815 11.674 7.063 1 31.29 ? C4 9LQ 401 A 1 HETATM 5 C C5 9LQ . . . C 3 10.582 10.99 7.236 1 32.08 ? C5 9LQ 401 A 1 HETATM 6 C C6 9LQ . . . C 3 10.602 9.577 7.171 1 31.25 ? C6 9LQ 401 A 1 HETATM 7 C C 9LQ . . . C 3 9.421 11.779 7.503 1 37.05 ? C 9LQ 401 A 1 HETATM 8 N N 9LQ . . . C 3 12.97 9.559 6.845 1 32.72 ? N 9LQ 401 A 1 HETATM 9 O O 9LQ . . . C 3 8.234 10.097 9.044 1 34.06 ? O 9LQ 401 A 1 HETATM 10 O O2 9LQ . . . C 3 2.536 16.325 9.537 1 55.32 ? O2 9LQ 401 A 1 HETATM 11 O O3 9LQ . . . C 3 7.162 10.606 6.872 1 39.04 ? O3 9LQ 401 A 1 HETATM 12 S S 9LQ . . . C 3 7.901 11.033 8.018 1 37.84 ? S 9LQ 401 A 1 HETATM 13 C C7 9LQ . . . C 3 11.789 8.937 6.977 1 32.58 ? C7 9LQ 401 A 1 HETATM 14 C C8 9LQ . . . C 3 12.972 10.886 6.882 1 29.37 ? C8 9LQ 401 A 1 HETATM 15 N N1 9LQ . . . C 3 7.023 12.214 8.73 1 43.61 ? N1 9LQ 401 A 1 HETATM 16 C C20 9LQ . . . C 3 6.393 13.251 7.889 1 46.7 ? C20 9LQ 401 A 1 HETATM 17 C C19 9LQ . . . C 3 5.023 12.997 7.668 1 46.37 ? C19 9LQ 401 A 1 HETATM 18 N N2 9LQ . . . C 3 4.114 13.194 8.784 1 48.94 ? N2 9LQ 401 A 1 HETATM 19 C C11 9LQ . . . C 3 4.694 13.536 10.081 1 43.25 ? C11 9LQ 401 A 1 HETATM 20 C C10 9LQ . . . C 3 5.635 12.563 10.778 1 43.65 ? C10 9LQ 401 A 1 HETATM 21 C C9 9LQ . . . C 3 7.037 12.497 10.18 1 39.81 ? C9 9LQ 401 A 1 HETATM 22 C C12 9LQ . . . C 3 2.729 13.583 8.462 1 54.3 ? C12 9LQ 401 A 1 HETATM 23 C C13 9LQ . . . C 3 2.578 14.299 7.135 1 56.38 ? C13 9LQ 401 A 1 HETATM 24 C C18 9LQ . . . C 3 2.685 15.705 7.034 1 58.9 ? C18 9LQ 401 A 1 HETATM 25 B B 9LQ . . . C 3 2.751 16.712 8.25 1 59.7 ? B 9LQ 401 A 1 HETATM 26 O O1 9LQ . . . C 3 3.002 18.031 8.031 1 61.34 ? O1 9LQ 401 A 1 HETATM 27 C C17 9LQ . . . C 3 2.654 16.264 5.747 1 57.44 ? C17 9LQ 401 A 1 HETATM 28 C C16 9LQ . . . C 3 2.492 15.484 4.617 1 54.04 ? C16 9LQ 401 A 1 HETATM 29 C C15 9LQ . . . C 3 2.342 14.125 4.736 1 53.5 ? C15 9LQ 401 A 1 HETATM 30 C C14 9LQ . . . C 3 2.38 13.532 5.986 1 55.95 ? C14 9LQ 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #