data_5OT8
#
_model_server_result.job_id            7FhPjwP1WzOw669FY_rCnA 
_model_server_result.datetime_utc      '2024-11-22 04:57:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ot8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5OT8 
#
_exptl.entry_id    5OT8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              246.264 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            octopine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OT8 
_cell.length_a            115.72 
_cell.length_b            115.72 
_cell.length_c            38.03 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OT8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,S 1 1 
B,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 R N N 
#
_chem_comp.formula           'C9 H18 N4 O4' 
_chem_comp.formula_weight    246.264 
_chem_comp.id                6DB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              octopine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C 6DB doub 1 n n 
CB CA 6DB sing 2 n n 
C OXT 6DB sing 3 n n 
C CA 6DB sing 4 n n 
CA N 6DB sing 5 n n 
N CAI 6DB sing 6 n n 
OAB CAE 6DB doub 7 n n 
CAI CAE 6DB sing 8 n n 
CAI CAK 6DB sing 9 n n 
CAE OAF 6DB sing 10 n n 
CAK CAL 6DB sing 11 n n 
CAL CAM 6DB sing 12 n n 
CAM NAN 6DB sing 13 n n 
NAN CAP 6DB sing 14 n n 
CAP NAO 6DB doub 15 n n 
CAP NAQ 6DB sing 16 n n 
CA H1 6DB sing 17 n n 
CB H2 6DB sing 18 n n 
CB H3 6DB sing 19 n n 
CB H4 6DB sing 20 n n 
N H5 6DB sing 21 n n 
CAI H7 6DB sing 22 n n 
OAF H8 6DB sing 23 n n 
CAK H9 6DB sing 24 n n 
CAK H10 6DB sing 25 n n 
CAL H11 6DB sing 26 n n 
CAL H12 6DB sing 27 n n 
CAM H13 6DB sing 28 n n 
CAM H14 6DB sing 29 n n 
NAN H15 6DB sing 30 n n 
NAO H16 6DB sing 31 n n 
NAQ H18 6DB sing 32 n n 
NAQ H19 6DB sing 33 n n 
OXT H20 6DB sing 34 n n 
#
_atom_sites.entry_id                     5OT8 
_atom_sites.fract_transf_matrix[1][1]    0.008642 
_atom_sites.fract_transf_matrix[1][2]    0.004989 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009978 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6DB A 1 301 301 6DB 6DB . 
D 3 EDO A 1 302 3 EDO EDO . 
E 3 EDO A 1 303 4 EDO EDO . 
F 3 EDO A 1 304 5 EDO EDO . 
G 4 SO4 A 1 305 1 SO4 SO4 . 
H 5 CL A 1 306 2 CL CL . 
I 5 CL A 1 307 3 CL CL . 
J 5 CL A 1 308 4 CL CL . 
K 5 CL A 1 309 5 CL CL . 
L 5 CL A 1 310 6 CL CL . 
M 5 CL A 1 311 11 CL CL . 
N 5 CL A 1 312 12 CL CL . 
O 6 PEG A 1 313 1 PEG PEG . 
P 5 CL B 1 301 7 CL CL . 
Q 5 CL B 1 302 9 CL CL . 
R 2 6DB B 1 303 301 6DB 6DB . 
S 7 HOH A 1 401 38 HOH HOH . 
S 7 HOH A 2 402 33 HOH HOH . 
S 7 HOH A 3 403 85 HOH HOH . 
S 7 HOH A 4 404 65 HOH HOH . 
S 7 HOH A 5 405 5 HOH HOH . 
S 7 HOH A 6 406 28 HOH HOH . 
S 7 HOH A 7 407 6 HOH HOH . 
S 7 HOH A 8 408 18 HOH HOH . 
S 7 HOH A 9 409 16 HOH HOH . 
S 7 HOH A 10 410 70 HOH HOH . 
S 7 HOH A 11 411 69 HOH HOH . 
S 7 HOH A 12 412 10 HOH HOH . 
S 7 HOH A 13 413 59 HOH HOH . 
S 7 HOH A 14 414 86 HOH HOH . 
S 7 HOH A 15 415 80 HOH HOH . 
S 7 HOH A 16 416 24 HOH HOH . 
S 7 HOH A 17 417 15 HOH HOH . 
S 7 HOH A 18 418 22 HOH HOH . 
S 7 HOH A 19 419 49 HOH HOH . 
S 7 HOH A 20 420 84 HOH HOH . 
S 7 HOH A 21 421 27 HOH HOH . 
S 7 HOH A 22 422 29 HOH HOH . 
S 7 HOH A 23 423 82 HOH HOH . 
S 7 HOH A 24 424 81 HOH HOH . 
S 7 HOH A 25 425 79 HOH HOH . 
S 7 HOH A 26 426 20 HOH HOH . 
S 7 HOH A 27 427 78 HOH HOH . 
S 7 HOH A 28 428 83 HOH HOH . 
S 7 HOH A 29 429 9 HOH HOH . 
S 7 HOH A 30 430 30 HOH HOH . 
S 7 HOH A 31 431 67 HOH HOH . 
S 7 HOH A 32 432 61 HOH HOH . 
S 7 HOH A 33 433 77 HOH HOH . 
S 7 HOH A 34 434 62 HOH HOH . 
S 7 HOH A 35 435 4 HOH HOH . 
S 7 HOH A 36 436 68 HOH HOH . 
T 7 HOH B 1 401 41 HOH HOH . 
T 7 HOH B 2 402 40 HOH HOH . 
T 7 HOH B 3 403 57 HOH HOH . 
T 7 HOH B 4 404 58 HOH HOH . 
T 7 HOH B 5 405 44 HOH HOH . 
T 7 HOH B 6 406 42 HOH HOH . 
T 7 HOH B 7 407 36 HOH HOH . 
T 7 HOH B 8 408 74 HOH HOH . 
T 7 HOH B 9 409 75 HOH HOH . 
T 7 HOH B 10 410 54 HOH HOH . 
T 7 HOH B 11 411 55 HOH HOH . 
T 7 HOH B 12 412 72 HOH HOH . 
T 7 HOH B 13 413 37 HOH HOH . 
T 7 HOH B 14 414 51 HOH HOH . 
T 7 HOH B 15 415 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O 6DB . . . C 2 5.788 19.349 -12.232 1 37.84 ? O 6DB 301 A 1 
HETATM 2 C C 6DB . . . C 2 5.751 20.438 -11.638 1 38.87 ? C 6DB 301 A 1 
HETATM 3 C CA 6DB . . . C 2 4.468 20.995 -11.178 1 40.35 ? CA 6DB 301 A 1 
HETATM 4 C CB 6DB . . . C 2 3.92 22.039 -12.182 1 40.55 ? CB 6DB 301 A 1 
HETATM 5 N N 6DB . . . C 2 3.44 19.996 -10.898 1 40.65 ? N 6DB 301 A 1 
HETATM 6 C CAI 6DB . . . C 2 3.743 18.87 -9.969 1 42.91 ? CAI 6DB 301 A 1 
HETATM 7 C CAE 6DB . . . C 2 2.501 18.056 -9.718 1 45.85 ? CAE 6DB 301 A 1 
HETATM 8 O OAB 6DB . . . C 2 1.357 18.553 -9.923 1 45.73 ? OAB 6DB 301 A 1 
HETATM 9 O OAF 6DB . . . C 2 2.596 16.846 -9.285 1 47.69 ? OAF 6DB 301 A 1 
HETATM 10 C CAK 6DB . . . C 2 4.394 19.286 -8.645 1 41.04 ? CAK 6DB 301 A 1 
HETATM 11 C CAL 6DB . . . C 2 3.601 20.398 -7.911 1 41.58 ? CAL 6DB 301 A 1 
HETATM 12 C CAM 6DB . . . C 2 3.835 20.391 -6.42 1 42.39 ? CAM 6DB 301 A 1 
HETATM 13 N NAN 6DB . . . C 2 3.205 21.58 -5.971 1 43.73 ? NAN 6DB 301 A 1 
HETATM 14 C CAP 6DB . . . C 2 3.562 22.172 -4.772 1 43.08 ? CAP 6DB 301 A 1 
HETATM 15 N NAO 6DB . . . C 2 2.954 23.256 -4.406 1 40.89 ? NAO 6DB 301 A 1 
HETATM 16 N NAQ 6DB . . . C 2 4.481 21.626 -4.048 1 44.16 ? NAQ 6DB 301 A 1 
HETATM 17 O OXT 6DB . . . C 2 6.851 21.036 -11.43 1 38.51 ? OXT 6DB 301 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           17 
#