data_5OT9 # _model_server_result.job_id Fu_NcChCoozA9boZy9eE5g _model_server_result.datetime_utc '2024-10-10 09:24:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ot9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 5OT9 # _exptl.entry_id 5OT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 227.217 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Histopine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OT9 _cell.length_a 113.81 _cell.length_b 113.81 _cell.length_c 37.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,J 1 1 B,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # _chem_comp.formula 'C9 H13 N3 O4' _chem_comp.formula_weight 227.217 _chem_comp.id AOZ _chem_comp.mon_nstd_flag . _chem_comp.name Histopine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAF CAE AOZ doub 13 n n CAQ NAN AOZ doub 14 n y CAQ NAQ AOZ sing 15 n y NAN CAL AOZ sing 16 n y NAQ CAP AOZ sing 17 n y CAL CAK AOZ sing 18 n n CAL CAP AOZ doub 19 n y CAE OAB AOZ sing 20 n n CAE CAI AOZ sing 21 n n CAK CAI AOZ sing 22 n n CAI N AOZ sing 23 n n N CA AOZ sing 24 n n CA C AOZ sing 25 n n CA CB AOZ sing 26 n n O C AOZ doub 27 n n C OXT AOZ sing 28 n n CA H1 AOZ sing 29 n n CB H2 AOZ sing 30 n n CB H3 AOZ sing 31 n n CB H4 AOZ sing 32 n n N H5 AOZ sing 33 n n CAI H7 AOZ sing 34 n n OAB H8 AOZ sing 35 n n CAK H9 AOZ sing 36 n n CAK H10 AOZ sing 37 n n CAP H12 AOZ sing 38 n n CAQ H13 AOZ sing 39 n n NAQ H14 AOZ sing 40 n n OXT H15 AOZ sing 41 n n # _atom_sites.entry_id 5OT9 _atom_sites.fract_transf_matrix[1][1] 0.008787 _atom_sites.fract_transf_matrix[1][2] 0.005073 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 301 1 EDO EDO . D 2 EDO A 1 302 2 EDO EDO . E 3 AOZ A 1 303 2 AOZ DRG . F 2 EDO A 1 304 2 EDO EDO . G 2 EDO A 1 305 2 EDO EDO . H 2 EDO A 1 306 2 EDO EDO . I 3 AOZ B 1 301 1 AOZ DRG . J 4 HOH A 1 401 25 HOH HOH . J 4 HOH A 2 402 41 HOH HOH . J 4 HOH A 3 403 38 HOH HOH . J 4 HOH A 4 404 27 HOH HOH . J 4 HOH A 5 405 24 HOH HOH . J 4 HOH A 6 406 26 HOH HOH . J 4 HOH A 7 407 49 HOH HOH . J 4 HOH A 8 408 42 HOH HOH . J 4 HOH A 9 409 63 HOH HOH . J 4 HOH A 10 410 28 HOH HOH . J 4 HOH A 11 411 37 HOH HOH . J 4 HOH A 12 412 34 HOH HOH . J 4 HOH A 13 413 4 HOH HOH . J 4 HOH A 14 414 17 HOH HOH . J 4 HOH A 15 415 46 HOH HOH . J 4 HOH A 16 416 8 HOH HOH . J 4 HOH A 17 417 16 HOH HOH . J 4 HOH A 18 418 31 HOH HOH . J 4 HOH A 19 419 59 HOH HOH . J 4 HOH A 20 420 47 HOH HOH . J 4 HOH A 21 421 15 HOH HOH . J 4 HOH A 22 422 14 HOH HOH . J 4 HOH A 23 423 29 HOH HOH . J 4 HOH A 24 424 10 HOH HOH . J 4 HOH A 25 425 45 HOH HOH . J 4 HOH A 26 426 62 HOH HOH . J 4 HOH A 27 427 48 HOH HOH . J 4 HOH A 28 428 30 HOH HOH . J 4 HOH A 29 429 60 HOH HOH . J 4 HOH A 30 430 56 HOH HOH . J 4 HOH A 31 431 22 HOH HOH . J 4 HOH A 32 432 64 HOH HOH . J 4 HOH A 33 433 9 HOH HOH . J 4 HOH A 34 434 6 HOH HOH . J 4 HOH A 35 435 3 HOH HOH . J 4 HOH A 36 436 58 HOH HOH . J 4 HOH A 37 437 5 HOH HOH . J 4 HOH A 38 438 61 HOH HOH . J 4 HOH A 39 439 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O AOZ . . . I 3 56.336 -2.625 -12.397 1 89.08 ? O AOZ 301 B 1 HETATM 2 C C AOZ . . . I 3 55.175 -2.182 -12.292 1 86.35 ? C AOZ 301 B 1 HETATM 3 C CA AOZ . . . I 3 54.943 -0.681 -12.498 1 74.89 ? CA AOZ 301 B 1 HETATM 4 C CB AOZ . . . I 3 55.196 0.028 -11.185 1 73.6 ? CB AOZ 301 B 1 HETATM 5 N N AOZ . . . I 3 55.781 -0.062 -13.544 1 73.38 ? N AOZ 301 B 1 HETATM 6 C CAI AOZ . . . I 3 55.844 -0.643 -14.864 1 73.14 ? CAI AOZ 301 B 1 HETATM 7 C CAE AOZ . . . I 3 56.651 0.231 -15.821 1 73.52 ? CAE AOZ 301 B 1 HETATM 8 O OAB AOZ . . . I 3 57.237 1.271 -15.413 1 72.32 ? OAB AOZ 301 B 1 HETATM 9 O OAF AOZ . . . I 3 56.75 -0.069 -17.043 1 74 ? OAF AOZ 301 B 1 HETATM 10 C CAK AOZ . . . I 3 54.508 -1.052 -15.466 1 73.04 ? CAK AOZ 301 B 1 HETATM 11 C CAL AOZ . . . I 3 53.557 0.061 -15.838 1 74.34 ? CAL AOZ 301 B 1 HETATM 12 N NAN AOZ . . . I 3 52.675 0.016 -16.851 1 75.62 ? NAN AOZ 301 B 1 HETATM 13 C CAP AOZ . . . I 3 53.377 1.305 -15.212 1 73.92 ? CAP AOZ 301 B 1 HETATM 14 C CAQ AOZ . . . I 3 52.006 1.159 -16.874 1 75.02 ? CAQ AOZ 301 B 1 HETATM 15 N NAQ AOZ . . . I 3 52.404 1.944 -15.882 1 74.63 ? NAQ AOZ 301 B 1 HETATM 16 O OXT AOZ . . . I 3 54.212 -2.953 -12.019 1 85.25 ? OXT AOZ 301 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #