data_5OTA
#
_model_server_result.job_id            zkED-Sim4vmKJZn4jcyLNQ 
_model_server_result.datetime_utc      '2024-11-08 16:44:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ota 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5OTA 
#
_exptl.entry_id    5OTA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              204.224 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-5-azanyl-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OTA 
_cell.length_a            115.23 
_cell.length_b            115.23 
_cell.length_c            37.84 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OTA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C8 H16 N2 O4' 
_chem_comp.formula_weight    204.224 
_chem_comp.id                AQQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-5-azanyl-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CB CA AQQ sing 13 n n 
O C AQQ doub 14 n n 
C OXT AQQ sing 15 n n 
C CA AQQ sing 16 n n 
CA N AQQ sing 17 n n 
N CAN AQQ sing 18 n n 
OAD CAL AQQ doub 19 n n 
CAN CAL AQQ sing 20 n n 
CAN CAI AQQ sing 21 n n 
CAL OAF AQQ sing 22 n n 
CAI CAH AQQ sing 23 n n 
CAH CAG AQQ sing 24 n n 
CAG NAB AQQ sing 25 n n 
CA H1 AQQ sing 26 n n 
CB H2 AQQ sing 27 n n 
CB H3 AQQ sing 28 n n 
CB H4 AQQ sing 29 n n 
N H5 AQQ sing 30 n n 
CAN H7 AQQ sing 31 n n 
OAF H8 AQQ sing 32 n n 
CAI H9 AQQ sing 33 n n 
CAI H10 AQQ sing 34 n n 
CAH H11 AQQ sing 35 n n 
CAH H12 AQQ sing 36 n n 
CAG H13 AQQ sing 37 n n 
CAG H14 AQQ sing 38 n n 
NAB H15 AQQ sing 39 n n 
NAB H16 AQQ sing 40 n n 
OXT H18 AQQ sing 41 n n 
#
_atom_sites.entry_id                     5OTA 
_atom_sites.fract_transf_matrix[1][1]    0.008678 
_atom_sites.fract_transf_matrix[1][2]    0.00501 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010021 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026427 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AQQ A 1 301 1 AQQ DRG . 
D 3 EDO A 1 302 1 EDO EDO . 
E 3 EDO A 1 303 2 EDO EDO . 
F 2 AQQ B 1 301 1 AQQ DRG . 
G 4 HOH A 1 401 236 HOH HOH . 
G 4 HOH A 2 402 198 HOH HOH . 
G 4 HOH A 3 403 99 HOH HOH . 
G 4 HOH A 4 404 122 HOH HOH . 
G 4 HOH A 5 405 19 HOH HOH . 
G 4 HOH A 6 406 235 HOH HOH . 
G 4 HOH A 7 407 18 HOH HOH . 
G 4 HOH A 8 408 2 HOH HOH . 
G 4 HOH A 9 409 219 HOH HOH . 
G 4 HOH A 10 410 205 HOH HOH . 
G 4 HOH A 11 411 10 HOH HOH . 
G 4 HOH A 12 412 116 HOH HOH . 
G 4 HOH A 13 413 156 HOH HOH . 
G 4 HOH A 14 414 63 HOH HOH . 
G 4 HOH A 15 415 42 HOH HOH . 
G 4 HOH A 16 416 137 HOH HOH . 
G 4 HOH A 17 417 157 HOH HOH . 
G 4 HOH A 18 418 120 HOH HOH . 
G 4 HOH A 19 419 35 HOH HOH . 
G 4 HOH A 20 420 36 HOH HOH . 
G 4 HOH A 21 421 142 HOH HOH . 
G 4 HOH A 22 422 101 HOH HOH . 
G 4 HOH A 23 423 105 HOH HOH . 
G 4 HOH A 24 424 38 HOH HOH . 
G 4 HOH A 25 425 194 HOH HOH . 
G 4 HOH A 26 426 54 HOH HOH . 
G 4 HOH A 27 427 23 HOH HOH . 
G 4 HOH A 28 428 220 HOH HOH . 
G 4 HOH A 29 429 139 HOH HOH . 
G 4 HOH A 30 430 50 HOH HOH . 
G 4 HOH A 31 431 12 HOH HOH . 
G 4 HOH A 32 432 118 HOH HOH . 
G 4 HOH A 33 433 51 HOH HOH . 
G 4 HOH A 34 434 124 HOH HOH . 
G 4 HOH A 35 435 61 HOH HOH . 
G 4 HOH A 36 436 1 HOH HOH . 
G 4 HOH A 37 437 144 HOH HOH . 
G 4 HOH A 38 438 13 HOH HOH . 
G 4 HOH A 39 439 24 HOH HOH . 
G 4 HOH A 40 440 217 HOH HOH . 
G 4 HOH A 41 441 28 HOH HOH . 
G 4 HOH A 42 442 226 HOH HOH . 
G 4 HOH A 43 443 192 HOH HOH . 
G 4 HOH A 44 444 21 HOH HOH . 
G 4 HOH A 45 445 26 HOH HOH . 
G 4 HOH A 46 446 8 HOH HOH . 
G 4 HOH A 47 447 4 HOH HOH . 
G 4 HOH A 48 448 9 HOH HOH . 
G 4 HOH A 49 449 52 HOH HOH . 
G 4 HOH A 50 450 237 HOH HOH . 
G 4 HOH A 51 451 143 HOH HOH . 
G 4 HOH A 52 452 227 HOH HOH . 
G 4 HOH A 53 453 14 HOH HOH . 
G 4 HOH A 54 454 232 HOH HOH . 
G 4 HOH A 55 455 39 HOH HOH . 
G 4 HOH A 56 456 222 HOH HOH . 
G 4 HOH A 57 457 155 HOH HOH . 
G 4 HOH A 58 458 117 HOH HOH . 
G 4 HOH A 59 459 37 HOH HOH . 
G 4 HOH A 60 460 113 HOH HOH . 
G 4 HOH A 61 461 16 HOH HOH . 
G 4 HOH A 62 462 5 HOH HOH . 
G 4 HOH A 63 463 49 HOH HOH . 
G 4 HOH A 64 464 186 HOH HOH . 
G 4 HOH A 65 465 187 HOH HOH . 
G 4 HOH A 66 466 200 HOH HOH . 
G 4 HOH A 67 467 47 HOH HOH . 
G 4 HOH A 68 468 230 HOH HOH . 
G 4 HOH A 69 469 224 HOH HOH . 
G 4 HOH A 70 470 190 HOH HOH . 
G 4 HOH A 71 471 201 HOH HOH . 
G 4 HOH A 72 472 197 HOH HOH . 
G 4 HOH A 73 473 58 HOH HOH . 
G 4 HOH A 74 474 115 HOH HOH . 
G 4 HOH A 75 475 140 HOH HOH . 
G 4 HOH A 76 476 225 HOH HOH . 
G 4 HOH A 77 477 64 HOH HOH . 
G 4 HOH A 78 478 17 HOH HOH . 
G 4 HOH A 79 479 193 HOH HOH . 
G 4 HOH A 80 480 7 HOH HOH . 
G 4 HOH A 81 481 92 HOH HOH . 
G 4 HOH A 82 482 189 HOH HOH . 
G 4 HOH A 83 483 93 HOH HOH . 
G 4 HOH A 84 484 33 HOH HOH . 
G 4 HOH A 85 485 202 HOH HOH . 
G 4 HOH A 86 486 20 HOH HOH . 
G 4 HOH A 87 487 131 HOH HOH . 
G 4 HOH A 88 488 11 HOH HOH . 
G 4 HOH A 89 489 133 HOH HOH . 
G 4 HOH A 90 490 3 HOH HOH . 
G 4 HOH A 91 491 114 HOH HOH . 
G 4 HOH A 92 492 53 HOH HOH . 
G 4 HOH A 93 493 98 HOH HOH . 
G 4 HOH A 94 494 34 HOH HOH . 
G 4 HOH A 95 495 79 HOH HOH . 
G 4 HOH A 96 496 180 HOH HOH . 
G 4 HOH A 97 497 15 HOH HOH . 
G 4 HOH A 98 498 127 HOH HOH . 
G 4 HOH A 99 499 130 HOH HOH . 
G 4 HOH A 100 500 145 HOH HOH . 
G 4 HOH A 101 501 29 HOH HOH . 
G 4 HOH A 102 502 185 HOH HOH . 
G 4 HOH A 103 503 103 HOH HOH . 
G 4 HOH A 104 504 228 HOH HOH . 
G 4 HOH A 105 505 78 HOH HOH . 
G 4 HOH A 106 506 75 HOH HOH . 
G 4 HOH A 107 507 81 HOH HOH . 
G 4 HOH A 108 508 134 HOH HOH . 
G 4 HOH A 109 509 80 HOH HOH . 
G 4 HOH A 110 510 199 HOH HOH . 
G 4 HOH A 111 511 95 HOH HOH . 
G 4 HOH A 112 512 73 HOH HOH . 
G 4 HOH A 113 513 94 HOH HOH . 
G 4 HOH A 114 514 77 HOH HOH . 
G 4 HOH A 115 515 239 HOH HOH . 
G 4 HOH A 116 516 238 HOH HOH . 
G 4 HOH A 117 517 121 HOH HOH . 
G 4 HOH A 118 518 104 HOH HOH . 
G 4 HOH A 119 519 72 HOH HOH . 
G 4 HOH A 120 520 76 HOH HOH . 
G 4 HOH A 121 521 69 HOH HOH . 
G 4 HOH A 122 522 234 HOH HOH . 
G 4 HOH A 123 523 126 HOH HOH . 
G 4 HOH A 124 524 223 HOH HOH . 
G 4 HOH A 125 525 208 HOH HOH . 
G 4 HOH A 126 526 153 HOH HOH . 
G 4 HOH A 127 527 231 HOH HOH . 
G 4 HOH A 128 528 181 HOH HOH . 
G 4 HOH A 129 529 82 HOH HOH . 
G 4 HOH A 130 530 184 HOH HOH . 
G 4 HOH A 131 531 123 HOH HOH . 
G 4 HOH A 132 532 97 HOH HOH . 
G 4 HOH A 133 533 70 HOH HOH . 
G 4 HOH A 134 534 188 HOH HOH . 
G 4 HOH A 135 535 179 HOH HOH . 
G 4 HOH A 136 536 191 HOH HOH . 
G 4 HOH A 137 537 91 HOH HOH . 
G 4 HOH A 138 538 183 HOH HOH . 
G 4 HOH A 139 539 146 HOH HOH . 
G 4 HOH A 140 540 102 HOH HOH . 
G 4 HOH A 141 541 125 HOH HOH . 
G 4 HOH A 142 542 229 HOH HOH . 
G 4 HOH A 143 543 100 HOH HOH . 
G 4 HOH A 144 544 59 HOH HOH . 
G 4 HOH A 145 545 233 HOH HOH . 
G 4 HOH A 146 546 221 HOH HOH . 
G 4 HOH A 147 547 178 HOH HOH . 
G 4 HOH A 148 548 240 HOH HOH . 
G 4 HOH A 149 549 207 HOH HOH . 
G 4 HOH A 150 550 66 HOH HOH . 
G 4 HOH A 151 551 71 HOH HOH . 
H 4 HOH B 1 401 62 HOH HOH . 
H 4 HOH B 2 402 203 HOH HOH . 
H 4 HOH B 3 403 57 HOH HOH . 
H 4 HOH B 4 404 218 HOH HOH . 
H 4 HOH B 5 405 55 HOH HOH . 
H 4 HOH B 6 406 83 HOH HOH . 
H 4 HOH B 7 407 27 HOH HOH . 
H 4 HOH B 8 408 86 HOH HOH . 
H 4 HOH B 9 409 206 HOH HOH . 
H 4 HOH B 10 410 45 HOH HOH . 
H 4 HOH B 11 411 176 HOH HOH . 
H 4 HOH B 12 412 212 HOH HOH . 
H 4 HOH B 13 413 108 HOH HOH . 
H 4 HOH B 14 414 215 HOH HOH . 
H 4 HOH B 15 415 195 HOH HOH . 
H 4 HOH B 16 416 65 HOH HOH . 
H 4 HOH B 17 417 56 HOH HOH . 
H 4 HOH B 18 418 6 HOH HOH . 
H 4 HOH B 19 419 210 HOH HOH . 
H 4 HOH B 20 420 25 HOH HOH . 
H 4 HOH B 21 421 204 HOH HOH . 
H 4 HOH B 22 422 107 HOH HOH . 
H 4 HOH B 23 423 151 HOH HOH . 
H 4 HOH B 24 424 164 HOH HOH . 
H 4 HOH B 25 425 211 HOH HOH . 
H 4 HOH B 26 426 30 HOH HOH . 
H 4 HOH B 27 427 43 HOH HOH . 
H 4 HOH B 28 428 167 HOH HOH . 
H 4 HOH B 29 429 31 HOH HOH . 
H 4 HOH B 30 430 174 HOH HOH . 
H 4 HOH B 31 431 22 HOH HOH . 
H 4 HOH B 32 432 168 HOH HOH . 
H 4 HOH B 33 433 88 HOH HOH . 
H 4 HOH B 34 434 166 HOH HOH . 
H 4 HOH B 35 435 216 HOH HOH . 
H 4 HOH B 36 436 44 HOH HOH . 
H 4 HOH B 37 437 173 HOH HOH . 
H 4 HOH B 38 438 41 HOH HOH . 
H 4 HOH B 39 439 129 HOH HOH . 
H 4 HOH B 40 440 152 HOH HOH . 
H 4 HOH B 41 441 46 HOH HOH . 
H 4 HOH B 42 442 40 HOH HOH . 
H 4 HOH B 43 443 128 HOH HOH . 
H 4 HOH B 44 444 87 HOH HOH . 
H 4 HOH B 45 445 163 HOH HOH . 
H 4 HOH B 46 446 60 HOH HOH . 
H 4 HOH B 47 447 109 HOH HOH . 
H 4 HOH B 48 448 84 HOH HOH . 
H 4 HOH B 49 449 160 HOH HOH . 
H 4 HOH B 50 450 161 HOH HOH . 
H 4 HOH B 51 451 74 HOH HOH . 
H 4 HOH B 52 452 119 HOH HOH . 
H 4 HOH B 53 453 158 HOH HOH . 
H 4 HOH B 54 454 90 HOH HOH . 
H 4 HOH B 55 455 170 HOH HOH . 
H 4 HOH B 56 456 138 HOH HOH . 
H 4 HOH B 57 457 110 HOH HOH . 
H 4 HOH B 58 458 214 HOH HOH . 
H 4 HOH B 59 459 171 HOH HOH . 
H 4 HOH B 60 460 172 HOH HOH . 
H 4 HOH B 61 461 141 HOH HOH . 
H 4 HOH B 62 462 169 HOH HOH . 
H 4 HOH B 63 463 175 HOH HOH . 
H 4 HOH B 64 464 209 HOH HOH . 
H 4 HOH B 65 465 111 HOH HOH . 
H 4 HOH B 66 466 165 HOH HOH . 
H 4 HOH B 67 467 213 HOH HOH . 
H 4 HOH B 68 468 159 HOH HOH . 
H 4 HOH B 69 469 154 HOH HOH . 
H 4 HOH B 70 470 89 HOH HOH . 
H 4 HOH B 71 471 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O AQQ . . . C 2 5.884 19.279 -12.25 1 29.14 ? O AQQ 301 A 1 
HETATM 2 C C AQQ . . . C 2 5.738 20.479 -11.963 1 26.83 ? C AQQ 301 A 1 
HETATM 3 C CA AQQ . . . C 2 4.318 21.035 -11.69 1 26.88 ? CA AQQ 301 A 1 
HETATM 4 C CB AQQ . . . C 2 3.797 21.77 -12.924 1 25.55 ? CB AQQ 301 A 1 
HETATM 5 N N AQQ . . . C 2 3.344 19.998 -11.284 1 25.82 ? N AQQ 301 A 1 
HETATM 6 C CAN AQQ . . . C 2 3.608 19.244 -10.091 1 28.42 ? CAN AQQ 301 A 1 
HETATM 7 C CAL AQQ . . . C 2 2.476 18.221 -9.93 1 27.58 ? CAL AQQ 301 A 1 
HETATM 8 O OAF AQQ . . . C 2 2.59 17.211 -9.174 1 27.63 ? OAF AQQ 301 A 1 
HETATM 9 O OAD AQQ . . . C 2 1.378 18.402 -10.531 1 26.51 ? OAD AQQ 301 A 1 
HETATM 10 C CAI AQQ . . . C 2 3.619 20.204 -8.885 1 26.44 ? CAI AQQ 301 A 1 
HETATM 11 C CAH AQQ . . . C 2 4.238 19.725 -7.577 1 24.63 ? CAH AQQ 301 A 1 
HETATM 12 C CAG AQQ . . . C 2 4.035 20.816 -6.539 1 22.65 ? CAG AQQ 301 A 1 
HETATM 13 N NAB AQQ . . . C 2 4.315 20.351 -5.177 1 24.63 ? NAB AQQ 301 A 1 
HETATM 14 O OXT AQQ . . . C 2 6.765 21.222 -11.899 1 24.64 ? OXT AQQ 301 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#