data_5OTC # _model_server_result.job_id CczAd_eyvlawYiNovzZKBQ _model_server_result.datetime_utc '2024-11-08 16:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5otc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5OTC # _exptl.entry_id 5OTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OTC _cell.length_a 113.99 _cell.length_b 113.99 _cell.length_c 37.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,X 1 1 B,V,W,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 109 n n C1 C2 EDO sing 110 n n C1 H11 EDO sing 111 n n C1 H12 EDO sing 112 n n O1 HO1 EDO sing 113 n n C2 O2 EDO sing 114 n n C2 H21 EDO sing 115 n n C2 H22 EDO sing 116 n n O2 HO2 EDO sing 117 n n # _atom_sites.entry_id 5OTC _atom_sites.fract_transf_matrix[1][1] 0.008773 _atom_sites.fract_transf_matrix[1][2] 0.005065 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01013 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AQK A 1 301 1 AQK DRG . D 3 EDO A 1 302 1 EDO EDO . E 3 EDO A 1 303 4 EDO EDO . F 3 EDO A 1 304 5 EDO EDO . G 3 EDO A 1 305 6 EDO EDO . H 3 EDO A 1 306 7 EDO EDO . I 3 EDO A 1 307 8 EDO EDO . J 4 CL A 1 308 2 CL CL . K 4 CL A 1 309 3 CL CL . L 4 CL A 1 310 4 CL CL . M 4 CL A 1 311 5 CL CL . N 4 CL A 1 312 6 CL CL . O 4 CL A 1 313 8 CL CL . P 4 CL A 1 314 10 CL CL . Q 4 CL A 1 315 13 CL CL . R 4 CL A 1 316 15 CL CL . S 4 CL A 1 317 16 CL CL . T 5 PEG A 1 318 4 PEG PEG . U 6 PGE A 1 319 1 PGE PGE . V 2 AQK B 1 301 1 AQK DRG . W 4 CL B 1 302 1 CL CL . X 7 HOH A 1 401 146 HOH HOH . X 7 HOH A 2 402 92 HOH HOH . X 7 HOH A 3 403 21 HOH HOH . X 7 HOH A 4 404 20 HOH HOH . X 7 HOH A 5 405 25 HOH HOH . X 7 HOH A 6 406 101 HOH HOH . X 7 HOH A 7 407 159 HOH HOH . X 7 HOH A 8 408 74 HOH HOH . X 7 HOH A 9 409 13 HOH HOH . X 7 HOH A 10 410 19 HOH HOH . X 7 HOH A 11 411 151 HOH HOH . X 7 HOH A 12 412 156 HOH HOH . X 7 HOH A 13 413 47 HOH HOH . X 7 HOH A 14 414 121 HOH HOH . X 7 HOH A 15 415 42 HOH HOH . X 7 HOH A 16 416 36 HOH HOH . X 7 HOH A 17 417 11 HOH HOH . X 7 HOH A 18 418 43 HOH HOH . X 7 HOH A 19 419 35 HOH HOH . X 7 HOH A 20 420 70 HOH HOH . X 7 HOH A 21 421 30 HOH HOH . X 7 HOH A 22 422 17 HOH HOH . X 7 HOH A 23 423 6 HOH HOH . X 7 HOH A 24 424 147 HOH HOH . X 7 HOH A 25 425 144 HOH HOH . X 7 HOH A 26 426 149 HOH HOH . X 7 HOH A 27 427 148 HOH HOH . X 7 HOH A 28 428 22 HOH HOH . X 7 HOH A 29 429 134 HOH HOH . X 7 HOH A 30 430 15 HOH HOH . X 7 HOH A 31 431 71 HOH HOH . X 7 HOH A 32 432 23 HOH HOH . X 7 HOH A 33 433 27 HOH HOH . X 7 HOH A 34 434 76 HOH HOH . X 7 HOH A 35 435 62 HOH HOH . X 7 HOH A 36 436 33 HOH HOH . X 7 HOH A 37 437 61 HOH HOH . X 7 HOH A 38 438 16 HOH HOH . X 7 HOH A 39 439 24 HOH HOH . X 7 HOH A 40 440 152 HOH HOH . X 7 HOH A 41 441 46 HOH HOH . X 7 HOH A 42 442 77 HOH HOH . X 7 HOH A 43 443 138 HOH HOH . X 7 HOH A 44 444 34 HOH HOH . X 7 HOH A 45 445 123 HOH HOH . X 7 HOH A 46 446 73 HOH HOH . X 7 HOH A 47 447 29 HOH HOH . X 7 HOH A 48 448 80 HOH HOH . X 7 HOH A 49 449 143 HOH HOH . X 7 HOH A 50 450 139 HOH HOH . X 7 HOH A 51 451 153 HOH HOH . X 7 HOH A 52 452 145 HOH HOH . X 7 HOH A 53 453 137 HOH HOH . X 7 HOH A 54 454 91 HOH HOH . X 7 HOH A 55 455 90 HOH HOH . X 7 HOH A 56 456 158 HOH HOH . X 7 HOH A 57 457 111 HOH HOH . X 7 HOH A 58 458 133 HOH HOH . X 7 HOH A 59 459 157 HOH HOH . X 7 HOH A 60 460 44 HOH HOH . X 7 HOH A 61 461 60 HOH HOH . X 7 HOH A 62 462 79 HOH HOH . X 7 HOH A 63 463 126 HOH HOH . X 7 HOH A 64 464 141 HOH HOH . X 7 HOH A 65 465 162 HOH HOH . X 7 HOH A 66 466 150 HOH HOH . X 7 HOH A 67 467 122 HOH HOH . X 7 HOH A 68 468 78 HOH HOH . X 7 HOH A 69 469 155 HOH HOH . X 7 HOH A 70 470 107 HOH HOH . X 7 HOH A 71 471 83 HOH HOH . X 7 HOH A 72 472 160 HOH HOH . X 7 HOH A 73 473 127 HOH HOH . Y 7 HOH B 1 401 54 HOH HOH . Y 7 HOH B 2 402 57 HOH HOH . Y 7 HOH B 3 403 40 HOH HOH . Y 7 HOH B 4 404 119 HOH HOH . Y 7 HOH B 5 405 39 HOH HOH . Y 7 HOH B 6 406 140 HOH HOH . Y 7 HOH B 7 407 52 HOH HOH . Y 7 HOH B 8 408 136 HOH HOH . Y 7 HOH B 9 409 118 HOH HOH . Y 7 HOH B 10 410 142 HOH HOH . Y 7 HOH B 11 411 161 HOH HOH . Y 7 HOH B 12 412 94 HOH HOH . Y 7 HOH B 13 413 154 HOH HOH . Y 7 HOH B 14 414 135 HOH HOH . Y 7 HOH B 15 415 99 HOH HOH . Y 7 HOH B 16 416 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -24.776 -41.043 -4.893 1 74.05 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . D 3 -24.562 -40.2 -3.762 1 72.68 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . D 3 -25.028 -40.19 -6.175 1 74.39 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . D 3 -25.718 -40.939 -7.175 1 74.19 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 4 #