data_5OTE # _model_server_result.job_id w_FMHYqvwWLF5bvMeNysIg _model_server_result.datetime_utc '2024-10-28 02:33:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ote # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5OTE # _exptl.entry_id 5OTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.484 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-[(6~{S})-1,8-diazaspiro[5.5]undecan-8-yl]-1~{H}-pyrrolo[2,3-b]pyridin-3-yl]-1,3-thiazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.86 _cell.angle_gamma 90 _cell.entry_id 5OTE _cell.length_a 114.53 _cell.length_b 44.3 _cell.length_c 90.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 N5 S' _chem_comp.formula_weight 353.484 _chem_comp.id AQE _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-[(6~{S})-1,8-diazaspiro[5.5]undecan-8-yl]-1~{H}-pyrrolo[2,3-b]pyridin-3-yl]-1,3-thiazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAM NAN AQE sing 13 n y CAM CAL AQE doub 14 n y NAN CAJ AQE doub 15 n y CAL SAK AQE sing 16 n y CAB CAA AQE doub 17 n y CAB NAC AQE sing 18 n y CAJ CAA AQE sing 19 n n CAJ SAK AQE sing 20 n y CAA CAE AQE sing 21 n y NAC CAD AQE sing 22 n y CAE CAD AQE doub 23 n y CAE CAF AQE sing 24 n y CAQ CAP AQE sing 25 n n CAQ CAR AQE sing 26 n n CAD NAI AQE sing 27 n y CAP NAO AQE sing 28 n n NAI CAH AQE doub 29 n y CAF NAO AQE sing 30 n n CAF CAG AQE doub 31 n y NAO CAY AQE sing 32 n n CAR CAS AQE sing 33 n n CAX CAS AQE sing 34 n n CAX CAW AQE sing 35 n n CAH CAG AQE sing 36 n y CAS CAY AQE sing 37 n n CAS NAT AQE sing 38 n n CAW CAV AQE sing 39 n n NAT CAU AQE sing 40 n n CAV CAU AQE sing 41 n n CAM H1 AQE sing 42 n n CAL H2 AQE sing 43 n n CAB H3 AQE sing 44 n n NAC H4 AQE sing 45 n n CAH H5 AQE sing 46 n n CAG H6 AQE sing 47 n n CAY H7 AQE sing 48 n n CAY H8 AQE sing 49 n n CAP H9 AQE sing 50 n n CAP H10 AQE sing 51 n n CAQ H11 AQE sing 52 n n CAQ H12 AQE sing 53 n n CAR H13 AQE sing 54 n n CAR H14 AQE sing 55 n n CAX H15 AQE sing 56 n n CAX H16 AQE sing 57 n n CAW H17 AQE sing 58 n n CAW H18 AQE sing 59 n n CAV H19 AQE sing 60 n n CAV H20 AQE sing 61 n n CAU H21 AQE sing 62 n n CAU H22 AQE sing 63 n n NAT H23 AQE sing 64 n n # _atom_sites.entry_id 5OTE _atom_sites.fract_transf_matrix[1][1] 0.008731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002646 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AQE A 1 501 501 AQE AQE . C 3 CL A 1 502 502 CL CL . D 4 EDO A 1 503 503 EDO EDO . E 5 HOH A 1 601 601 HOH HOH . E 5 HOH A 2 602 602 HOH HOH . E 5 HOH A 3 603 603 HOH HOH . E 5 HOH A 4 604 604 HOH HOH . E 5 HOH A 5 605 605 HOH HOH . E 5 HOH A 6 606 606 HOH HOH . E 5 HOH A 7 607 607 HOH HOH . E 5 HOH A 8 608 608 HOH HOH . E 5 HOH A 9 609 609 HOH HOH . E 5 HOH A 10 610 610 HOH HOH . E 5 HOH A 11 611 611 HOH HOH . E 5 HOH A 12 612 612 HOH HOH . E 5 HOH A 13 613 613 HOH HOH . E 5 HOH A 14 614 614 HOH HOH . E 5 HOH A 15 615 615 HOH HOH . E 5 HOH A 16 616 616 HOH HOH . E 5 HOH A 17 617 617 HOH HOH . E 5 HOH A 18 618 618 HOH HOH . E 5 HOH A 19 619 619 HOH HOH . E 5 HOH A 20 620 620 HOH HOH . E 5 HOH A 21 621 621 HOH HOH . E 5 HOH A 22 622 622 HOH HOH . E 5 HOH A 23 623 623 HOH HOH . E 5 HOH A 24 624 624 HOH HOH . E 5 HOH A 25 625 625 HOH HOH . E 5 HOH A 26 626 626 HOH HOH . E 5 HOH A 27 627 627 HOH HOH . E 5 HOH A 28 628 628 HOH HOH . E 5 HOH A 29 629 762 HOH HOH . E 5 HOH A 30 630 629 HOH HOH . E 5 HOH A 31 631 630 HOH HOH . E 5 HOH A 32 632 631 HOH HOH . E 5 HOH A 33 633 632 HOH HOH . E 5 HOH A 34 634 633 HOH HOH . E 5 HOH A 35 635 634 HOH HOH . E 5 HOH A 36 636 635 HOH HOH . E 5 HOH A 37 637 636 HOH HOH . E 5 HOH A 38 638 637 HOH HOH . E 5 HOH A 39 639 638 HOH HOH . E 5 HOH A 40 640 639 HOH HOH . E 5 HOH A 41 641 640 HOH HOH . E 5 HOH A 42 642 641 HOH HOH . E 5 HOH A 43 643 642 HOH HOH . E 5 HOH A 44 644 643 HOH HOH . E 5 HOH A 45 645 644 HOH HOH . E 5 HOH A 46 646 645 HOH HOH . E 5 HOH A 47 647 646 HOH HOH . E 5 HOH A 48 648 647 HOH HOH . E 5 HOH A 49 649 648 HOH HOH . E 5 HOH A 50 650 649 HOH HOH . E 5 HOH A 51 651 650 HOH HOH . E 5 HOH A 52 652 651 HOH HOH . E 5 HOH A 53 653 652 HOH HOH . E 5 HOH A 54 654 653 HOH HOH . E 5 HOH A 55 655 654 HOH HOH . E 5 HOH A 56 656 655 HOH HOH . E 5 HOH A 57 657 656 HOH HOH . E 5 HOH A 58 658 657 HOH HOH . E 5 HOH A 59 659 658 HOH HOH . E 5 HOH A 60 660 659 HOH HOH . E 5 HOH A 61 661 660 HOH HOH . E 5 HOH A 62 662 661 HOH HOH . E 5 HOH A 63 663 662 HOH HOH . E 5 HOH A 64 664 663 HOH HOH . E 5 HOH A 65 665 664 HOH HOH . E 5 HOH A 66 666 665 HOH HOH . E 5 HOH A 67 667 666 HOH HOH . E 5 HOH A 68 668 667 HOH HOH . E 5 HOH A 69 669 668 HOH HOH . E 5 HOH A 70 670 669 HOH HOH . E 5 HOH A 71 671 670 HOH HOH . E 5 HOH A 72 672 671 HOH HOH . E 5 HOH A 73 673 672 HOH HOH . E 5 HOH A 74 674 673 HOH HOH . E 5 HOH A 75 675 674 HOH HOH . E 5 HOH A 76 676 675 HOH HOH . E 5 HOH A 77 677 676 HOH HOH . E 5 HOH A 78 678 677 HOH HOH . E 5 HOH A 79 679 678 HOH HOH . E 5 HOH A 80 680 679 HOH HOH . E 5 HOH A 81 681 680 HOH HOH . E 5 HOH A 82 682 681 HOH HOH . E 5 HOH A 83 683 682 HOH HOH . E 5 HOH A 84 684 683 HOH HOH . E 5 HOH A 85 685 684 HOH HOH . E 5 HOH A 86 686 685 HOH HOH . E 5 HOH A 87 687 686 HOH HOH . E 5 HOH A 88 688 687 HOH HOH . E 5 HOH A 89 689 688 HOH HOH . E 5 HOH A 90 690 689 HOH HOH . E 5 HOH A 91 691 690 HOH HOH . E 5 HOH A 92 692 691 HOH HOH . E 5 HOH A 93 693 692 HOH HOH . E 5 HOH A 94 694 693 HOH HOH . E 5 HOH A 95 695 694 HOH HOH . E 5 HOH A 96 696 695 HOH HOH . E 5 HOH A 97 697 696 HOH HOH . E 5 HOH A 98 698 697 HOH HOH . E 5 HOH A 99 699 698 HOH HOH . E 5 HOH A 100 700 699 HOH HOH . E 5 HOH A 101 701 700 HOH HOH . E 5 HOH A 102 702 701 HOH HOH . E 5 HOH A 103 703 702 HOH HOH . E 5 HOH A 104 704 703 HOH HOH . E 5 HOH A 105 705 704 HOH HOH . E 5 HOH A 106 706 705 HOH HOH . E 5 HOH A 107 707 706 HOH HOH . E 5 HOH A 108 708 707 HOH HOH . E 5 HOH A 109 709 708 HOH HOH . E 5 HOH A 110 710 709 HOH HOH . E 5 HOH A 111 711 710 HOH HOH . E 5 HOH A 112 712 711 HOH HOH . E 5 HOH A 113 713 712 HOH HOH . E 5 HOH A 114 714 713 HOH HOH . E 5 HOH A 115 715 714 HOH HOH . E 5 HOH A 116 716 715 HOH HOH . E 5 HOH A 117 717 716 HOH HOH . E 5 HOH A 118 718 717 HOH HOH . E 5 HOH A 119 719 718 HOH HOH . E 5 HOH A 120 720 719 HOH HOH . E 5 HOH A 121 721 720 HOH HOH . E 5 HOH A 122 722 721 HOH HOH . E 5 HOH A 123 723 722 HOH HOH . E 5 HOH A 124 724 723 HOH HOH . E 5 HOH A 125 725 724 HOH HOH . E 5 HOH A 126 726 725 HOH HOH . E 5 HOH A 127 727 726 HOH HOH . E 5 HOH A 128 728 727 HOH HOH . E 5 HOH A 129 729 728 HOH HOH . E 5 HOH A 130 730 729 HOH HOH . E 5 HOH A 131 731 730 HOH HOH . E 5 HOH A 132 732 731 HOH HOH . E 5 HOH A 133 733 732 HOH HOH . E 5 HOH A 134 734 733 HOH HOH . E 5 HOH A 135 735 734 HOH HOH . E 5 HOH A 136 736 735 HOH HOH . E 5 HOH A 137 737 736 HOH HOH . E 5 HOH A 138 738 737 HOH HOH . E 5 HOH A 139 739 738 HOH HOH . E 5 HOH A 140 740 739 HOH HOH . E 5 HOH A 141 741 740 HOH HOH . E 5 HOH A 142 742 741 HOH HOH . E 5 HOH A 143 743 742 HOH HOH . E 5 HOH A 144 744 743 HOH HOH . E 5 HOH A 145 745 744 HOH HOH . E 5 HOH A 146 746 745 HOH HOH . E 5 HOH A 147 747 746 HOH HOH . E 5 HOH A 148 748 747 HOH HOH . E 5 HOH A 149 749 748 HOH HOH . E 5 HOH A 150 750 749 HOH HOH . E 5 HOH A 151 751 750 HOH HOH . E 5 HOH A 152 752 751 HOH HOH . E 5 HOH A 153 753 752 HOH HOH . E 5 HOH A 154 754 753 HOH HOH . E 5 HOH A 155 755 754 HOH HOH . E 5 HOH A 156 756 755 HOH HOH . E 5 HOH A 157 757 756 HOH HOH . E 5 HOH A 158 758 757 HOH HOH . E 5 HOH A 159 759 758 HOH HOH . E 5 HOH A 160 760 759 HOH HOH . E 5 HOH A 161 761 760 HOH HOH . E 5 HOH A 162 762 761 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAN AQE . . . B 2 15.657 1.098 24.809 1 27.71 ? NAN AQE 501 A 1 HETATM 2 C CAM AQE . . . B 2 15.823 2.414 24.501 1 28.32 ? CAM AQE 501 A 1 HETATM 3 C CAL AQE . . . B 2 15.473 3.275 25.488 1 31.18 ? CAL AQE 501 A 1 HETATM 4 S SAK AQE . . . B 2 14.883 2.329 26.834 1 28.51 ? SAK AQE 501 A 1 HETATM 5 C CAJ AQE . . . B 2 15.239 0.813 26.055 1 27.03 ? CAJ AQE 501 A 1 HETATM 6 C CAA AQE . . . B 2 14.875 -0.398 26.621 1 25.66 ? CAA AQE 501 A 1 HETATM 7 C CAE AQE . . . B 2 15.045 -0.858 27.956 1 25.35 ? CAE AQE 501 A 1 HETATM 8 C CAB AQE . . . B 2 14.097 -1.286 25.992 1 24.62 ? CAB AQE 501 A 1 HETATM 9 N NAC AQE . . . B 2 13.834 -2.311 26.818 1 24.86 ? NAC AQE 501 A 1 HETATM 10 C CAD AQE . . . B 2 14.347 -2.06 28.011 1 25.6 ? CAD AQE 501 A 1 HETATM 11 N NAI AQE . . . B 2 14.279 -2.836 29.103 1 26.06 ? NAI AQE 501 A 1 HETATM 12 C CAH AQE . . . B 2 14.918 -2.471 30.193 1 27.25 ? CAH AQE 501 A 1 HETATM 13 C CAG AQE . . . B 2 15.626 -1.279 30.246 1 26.94 ? CAG AQE 501 A 1 HETATM 14 C CAF AQE . . . B 2 15.699 -0.443 29.11 1 26 ? CAF AQE 501 A 1 HETATM 15 N NAO AQE . . . B 2 16.55 0.65 29.16 1 26.03 ? NAO AQE 501 A 1 HETATM 16 C CAY AQE . . . B 2 16.924 1.206 30.507 1 26.37 ? CAY AQE 501 A 1 HETATM 17 C CAP AQE . . . B 2 17.587 0.73 28.08 1 24.68 ? CAP AQE 501 A 1 HETATM 18 C CAQ AQE . . . B 2 18.371 2.061 27.962 1 25.37 ? CAQ AQE 501 A 1 HETATM 19 C CAR AQE . . . B 2 18.9 2.431 29.386 1 26.28 ? CAR AQE 501 A 1 HETATM 20 C CAS AQE . . . B 2 17.753 2.513 30.394 1 27.58 ? CAS AQE 501 A 1 HETATM 21 C CAX AQE . . . B 2 16.807 3.687 30.041 1 28.11 ? CAX AQE 501 A 1 HETATM 22 C CAW AQE . . . B 2 15.816 4.049 31.188 1 31.05 ? CAW AQE 501 A 1 HETATM 23 C CAV AQE . . . B 2 16.582 4.206 32.52 1 31.57 ? CAV AQE 501 A 1 HETATM 24 C CAU AQE . . . B 2 17.52 3.011 32.806 1 30.46 ? CAU AQE 501 A 1 HETATM 25 N NAT AQE . . . B 2 18.471 2.794 31.661 1 28.04 ? NAT AQE 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #