data_5OTF
#
_model_server_result.job_id            nELFtvZFCvcZ3MGn9HM3lg 
_model_server_result.datetime_utc      '2025-01-10 11:16:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5otf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    5OTF 
#
_exptl.entry_id    5OTF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              348.445 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (6~{S})-8-(3-pyrimidin-4-yl-1~{H}-pyrrolo[2,3-b]pyridin-4-yl)-1,8-diazaspiro[5.5]undecane 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.6 
_cell.angle_gamma         90 
_cell.entry_id            5OTF 
_cell.length_a            115.19 
_cell.length_b            44.056 
_cell.length_c            91.845 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OTF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H24 N6' 
_chem_comp.formula_weight    348.445 
_chem_comp.id                AQ5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (6~{S})-8-(3-pyrimidin-4-yl-1~{H}-pyrrolo[2,3-b]pyridin-4-yl)-1,8-diazaspiro[5.5]undecane 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N3 AQ5 doub 13 n y 
C2 N1 AQ5 sing 14 n y 
N3 C4 AQ5 sing 15 n y 
N1 C6 AQ5 doub 16 n y 
CAC CAB AQ5 doub 17 n y 
CAC NAD AQ5 sing 18 n y 
C4 CAB AQ5 sing 19 n n 
C4 C5 AQ5 doub 20 n y 
C6 C5 AQ5 sing 21 n y 
CAB CAF AQ5 sing 22 n y 
NAD CAE AQ5 sing 23 n y 
CAF CAE AQ5 doub 24 n y 
CAF CAG AQ5 sing 25 n y 
CAE NAJ AQ5 sing 26 n y 
CAM CAL AQ5 sing 27 n n 
CAM CAN AQ5 sing 28 n n 
CAL NAK AQ5 sing 29 n n 
NAJ CAI AQ5 doub 30 n y 
CAG NAK AQ5 sing 31 n n 
CAG CAH AQ5 doub 32 n y 
NAK CAP AQ5 sing 33 n n 
CAN CAO AQ5 sing 34 n n 
CAI CAH AQ5 sing 35 n y 
CAV CAO AQ5 sing 36 n n 
CAV CAW AQ5 sing 37 n n 
CAP CAO AQ5 sing 38 n n 
CAO NAZ AQ5 sing 39 n n 
CAW CAX AQ5 sing 40 n n 
NAZ CAY AQ5 sing 41 n n 
CAX CAY AQ5 sing 42 n n 
C5 H1 AQ5 sing 43 n n 
C6 H2 AQ5 sing 44 n n 
CAV H3 AQ5 sing 45 n n 
CAV H4 AQ5 sing 46 n n 
CAW H5 AQ5 sing 47 n n 
CAW H6 AQ5 sing 48 n n 
CAX H7 AQ5 sing 49 n n 
CAX H8 AQ5 sing 50 n n 
CAY H9 AQ5 sing 51 n n 
CAY H10 AQ5 sing 52 n n 
NAZ H11 AQ5 sing 53 n n 
CAP H13 AQ5 sing 54 n n 
CAP H14 AQ5 sing 55 n n 
CAN H15 AQ5 sing 56 n n 
CAN H16 AQ5 sing 57 n n 
CAM H17 AQ5 sing 58 n n 
CAM H18 AQ5 sing 59 n n 
CAL H19 AQ5 sing 60 n n 
CAL H20 AQ5 sing 61 n n 
CAH H21 AQ5 sing 62 n n 
CAI H22 AQ5 sing 63 n n 
NAD H23 AQ5 sing 64 n n 
CAC H24 AQ5 sing 65 n n 
C2 H25 AQ5 sing 66 n n 
#
_atom_sites.entry_id                     5OTF 
_atom_sites.fract_transf_matrix[1][1]    0.008681 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002753 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022698 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011422 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 501 1 CL CL . 
C 3 EDO A 1 502 5 EDO EDO . 
D 3 EDO A 1 503 6 EDO EDO . 
E 4 AQ5 A 1 504 1 AQ5 DRG . 
F 5 HOH A 1 601 243 HOH HOH . 
F 5 HOH A 2 602 172 HOH HOH . 
F 5 HOH A 3 603 275 HOH HOH . 
F 5 HOH A 4 604 110 HOH HOH . 
F 5 HOH A 5 605 224 HOH HOH . 
F 5 HOH A 6 606 109 HOH HOH . 
F 5 HOH A 7 607 284 HOH HOH . 
F 5 HOH A 8 608 149 HOH HOH . 
F 5 HOH A 9 609 89 HOH HOH . 
F 5 HOH A 10 610 166 HOH HOH . 
F 5 HOH A 11 611 193 HOH HOH . 
F 5 HOH A 12 612 118 HOH HOH . 
F 5 HOH A 13 613 216 HOH HOH . 
F 5 HOH A 14 614 105 HOH HOH . 
F 5 HOH A 15 615 134 HOH HOH . 
F 5 HOH A 16 616 97 HOH HOH . 
F 5 HOH A 17 617 293 HOH HOH . 
F 5 HOH A 18 618 282 HOH HOH . 
F 5 HOH A 19 619 100 HOH HOH . 
F 5 HOH A 20 620 48 HOH HOH . 
F 5 HOH A 21 621 199 HOH HOH . 
F 5 HOH A 22 622 158 HOH HOH . 
F 5 HOH A 23 623 78 HOH HOH . 
F 5 HOH A 24 624 40 HOH HOH . 
F 5 HOH A 25 625 189 HOH HOH . 
F 5 HOH A 26 626 82 HOH HOH . 
F 5 HOH A 27 627 178 HOH HOH . 
F 5 HOH A 28 628 154 HOH HOH . 
F 5 HOH A 29 629 30 HOH HOH . 
F 5 HOH A 30 630 180 HOH HOH . 
F 5 HOH A 31 631 181 HOH HOH . 
F 5 HOH A 32 632 201 HOH HOH . 
F 5 HOH A 33 633 182 HOH HOH . 
F 5 HOH A 34 634 165 HOH HOH . 
F 5 HOH A 35 635 170 HOH HOH . 
F 5 HOH A 36 636 132 HOH HOH . 
F 5 HOH A 37 637 279 HOH HOH . 
F 5 HOH A 38 638 205 HOH HOH . 
F 5 HOH A 39 639 101 HOH HOH . 
F 5 HOH A 40 640 77 HOH HOH . 
F 5 HOH A 41 641 83 HOH HOH . 
F 5 HOH A 42 642 65 HOH HOH . 
F 5 HOH A 43 643 111 HOH HOH . 
F 5 HOH A 44 644 143 HOH HOH . 
F 5 HOH A 45 645 147 HOH HOH . 
F 5 HOH A 46 646 116 HOH HOH . 
F 5 HOH A 47 647 117 HOH HOH . 
F 5 HOH A 48 648 66 HOH HOH . 
F 5 HOH A 49 649 91 HOH HOH . 
F 5 HOH A 50 650 115 HOH HOH . 
F 5 HOH A 51 651 209 HOH HOH . 
F 5 HOH A 52 652 183 HOH HOH . 
F 5 HOH A 53 653 131 HOH HOH . 
F 5 HOH A 54 654 37 HOH HOH . 
F 5 HOH A 55 655 171 HOH HOH . 
F 5 HOH A 56 656 223 HOH HOH . 
F 5 HOH A 57 657 144 HOH HOH . 
F 5 HOH A 58 658 92 HOH HOH . 
F 5 HOH A 59 659 286 HOH HOH . 
F 5 HOH A 60 660 146 HOH HOH . 
F 5 HOH A 61 661 88 HOH HOH . 
F 5 HOH A 62 662 49 HOH HOH . 
F 5 HOH A 63 663 188 HOH HOH . 
F 5 HOH A 64 664 136 HOH HOH . 
F 5 HOH A 65 665 24 HOH HOH . 
F 5 HOH A 66 666 151 HOH HOH . 
F 5 HOH A 67 667 94 HOH HOH . 
F 5 HOH A 68 668 138 HOH HOH . 
F 5 HOH A 69 669 16 HOH HOH . 
F 5 HOH A 70 670 160 HOH HOH . 
F 5 HOH A 71 671 104 HOH HOH . 
F 5 HOH A 72 672 297 HOH HOH . 
F 5 HOH A 73 673 114 HOH HOH . 
F 5 HOH A 74 674 187 HOH HOH . 
F 5 HOH A 75 675 86 HOH HOH . 
F 5 HOH A 76 676 99 HOH HOH . 
F 5 HOH A 77 677 257 HOH HOH . 
F 5 HOH A 78 678 75 HOH HOH . 
F 5 HOH A 79 679 95 HOH HOH . 
F 5 HOH A 80 680 135 HOH HOH . 
F 5 HOH A 81 681 51 HOH HOH . 
F 5 HOH A 82 682 43 HOH HOH . 
F 5 HOH A 83 683 294 HOH HOH . 
F 5 HOH A 84 684 93 HOH HOH . 
F 5 HOH A 85 685 98 HOH HOH . 
F 5 HOH A 86 686 57 HOH HOH . 
F 5 HOH A 87 687 150 HOH HOH . 
F 5 HOH A 88 688 59 HOH HOH . 
F 5 HOH A 89 689 194 HOH HOH . 
F 5 HOH A 90 690 74 HOH HOH . 
F 5 HOH A 91 691 207 HOH HOH . 
F 5 HOH A 92 692 280 HOH HOH . 
F 5 HOH A 93 693 192 HOH HOH . 
F 5 HOH A 94 694 185 HOH HOH . 
F 5 HOH A 95 695 61 HOH HOH . 
F 5 HOH A 96 696 174 HOH HOH . 
F 5 HOH A 97 697 36 HOH HOH . 
F 5 HOH A 98 698 52 HOH HOH . 
F 5 HOH A 99 699 196 HOH HOH . 
F 5 HOH A 100 700 203 HOH HOH . 
F 5 HOH A 101 701 121 HOH HOH . 
F 5 HOH A 102 702 213 HOH HOH . 
F 5 HOH A 103 703 208 HOH HOH . 
F 5 HOH A 104 704 292 HOH HOH . 
F 5 HOH A 105 705 4 HOH HOH . 
F 5 HOH A 106 706 126 HOH HOH . 
F 5 HOH A 107 707 63 HOH HOH . 
F 5 HOH A 108 708 67 HOH HOH . 
F 5 HOH A 109 709 133 HOH HOH . 
F 5 HOH A 110 710 62 HOH HOH . 
F 5 HOH A 111 711 69 HOH HOH . 
F 5 HOH A 112 712 72 HOH HOH . 
F 5 HOH A 113 713 81 HOH HOH . 
F 5 HOH A 114 714 232 HOH HOH . 
F 5 HOH A 115 715 41 HOH HOH . 
F 5 HOH A 116 716 173 HOH HOH . 
F 5 HOH A 117 717 212 HOH HOH . 
F 5 HOH A 118 718 60 HOH HOH . 
F 5 HOH A 119 719 277 HOH HOH . 
F 5 HOH A 120 720 76 HOH HOH . 
F 5 HOH A 121 721 73 HOH HOH . 
F 5 HOH A 122 722 87 HOH HOH . 
F 5 HOH A 123 723 103 HOH HOH . 
F 5 HOH A 124 724 260 HOH HOH . 
F 5 HOH A 125 725 108 HOH HOH . 
F 5 HOH A 126 726 46 HOH HOH . 
F 5 HOH A 127 727 202 HOH HOH . 
F 5 HOH A 128 728 140 HOH HOH . 
F 5 HOH A 129 729 29 HOH HOH . 
F 5 HOH A 130 730 54 HOH HOH . 
F 5 HOH A 131 731 130 HOH HOH . 
F 5 HOH A 132 732 148 HOH HOH . 
F 5 HOH A 133 733 106 HOH HOH . 
F 5 HOH A 134 734 96 HOH HOH . 
F 5 HOH A 135 735 79 HOH HOH . 
F 5 HOH A 136 736 217 HOH HOH . 
F 5 HOH A 137 737 119 HOH HOH . 
F 5 HOH A 138 738 290 HOH HOH . 
F 5 HOH A 139 739 157 HOH HOH . 
F 5 HOH A 140 740 179 HOH HOH . 
F 5 HOH A 141 741 32 HOH HOH . 
F 5 HOH A 142 742 255 HOH HOH . 
F 5 HOH A 143 743 129 HOH HOH . 
F 5 HOH A 144 744 274 HOH HOH . 
F 5 HOH A 145 745 283 HOH HOH . 
F 5 HOH A 146 746 64 HOH HOH . 
F 5 HOH A 147 747 128 HOH HOH . 
F 5 HOH A 148 748 230 HOH HOH . 
F 5 HOH A 149 749 296 HOH HOH . 
F 5 HOH A 150 750 295 HOH HOH . 
F 5 HOH A 151 751 221 HOH HOH . 
F 5 HOH A 152 752 123 HOH HOH . 
F 5 HOH A 153 753 289 HOH HOH . 
F 5 HOH A 154 754 127 HOH HOH . 
F 5 HOH A 155 755 288 HOH HOH . 
F 5 HOH A 156 756 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 AQ5 . . . E 4 15.062 0.984 25.997 1 28.85 ? C4 AQ5 504 A 1 
HETATM 2 C C5 AQ5 . . . E 4 15.035 2.151 26.754 1 28.99 ? C5 AQ5 504 A 1 
HETATM 3 C C6 AQ5 . . . E 4 15.378 3.383 26.18 1 30.06 ? C6 AQ5 504 A 1 
HETATM 4 N N1 AQ5 . . . E 4 15.653 3.434 24.879 1 28.53 ? N1 AQ5 504 A 1 
HETATM 5 N N3 AQ5 . . . E 4 15.295 1.129 24.657 1 27.37 ? N3 AQ5 504 A 1 
HETATM 6 C CAV AQ5 . . . E 4 16.669 3.944 30.327 1 33.26 ? CAV AQ5 504 A 1 
HETATM 7 C CAW AQ5 . . . E 4 15.657 4.051 31.444 1 34.34 ? CAW AQ5 504 A 1 
HETATM 8 C CAX AQ5 . . . E 4 16.426 4.224 32.767 1 35.49 ? CAX AQ5 504 A 1 
HETATM 9 C CAY AQ5 . . . E 4 17.265 2.994 32.984 1 35.62 ? CAY AQ5 504 A 1 
HETATM 10 N NAZ AQ5 . . . E 4 18.248 2.844 31.904 1 34.62 ? NAZ AQ5 504 A 1 
HETATM 11 C CAO AQ5 . . . E 4 17.553 2.69 30.572 1 32.29 ? CAO AQ5 504 A 1 
HETATM 12 C CAP AQ5 . . . E 4 16.676 1.395 30.543 1 32.56 ? CAP AQ5 504 A 1 
HETATM 13 C CAN AQ5 . . . E 4 18.691 2.615 29.564 1 31.01 ? CAN AQ5 504 A 1 
HETATM 14 C CAM AQ5 . . . E 4 18.15 2.209 28.187 1 29.95 ? CAM AQ5 504 A 1 
HETATM 15 C CAL AQ5 . . . E 4 17.577 0.803 28.21 1 29.26 ? CAL AQ5 504 A 1 
HETATM 16 N NAK AQ5 . . . E 4 16.449 0.728 29.191 1 30.26 ? NAK AQ5 504 A 1 
HETATM 17 C CAG AQ5 . . . E 4 15.58 -0.375 29.063 1 30.67 ? CAG AQ5 504 A 1 
HETATM 18 C CAF AQ5 . . . E 4 14.869 -0.733 27.903 1 30.02 ? CAF AQ5 504 A 1 
HETATM 19 C CAH AQ5 . . . E 4 15.516 -1.259 30.164 1 32.61 ? CAH AQ5 504 A 1 
HETATM 20 C CAI AQ5 . . . E 4 14.775 -2.442 30.126 1 33.05 ? CAI AQ5 504 A 1 
HETATM 21 N NAJ AQ5 . . . E 4 14.131 -2.763 29.018 1 30.72 ? NAJ AQ5 504 A 1 
HETATM 22 C CAE AQ5 . . . E 4 14.165 -1.954 27.943 1 29.81 ? CAE AQ5 504 A 1 
HETATM 23 N NAD AQ5 . . . E 4 13.598 -2.133 26.749 1 28.81 ? NAD AQ5 504 A 1 
HETATM 24 C CAC AQ5 . . . E 4 13.874 -1.084 25.962 1 28.39 ? CAC AQ5 504 A 1 
HETATM 25 C CAB AQ5 . . . E 4 14.67 -0.226 26.589 1 28.09 ? CAB AQ5 504 A 1 
HETATM 26 C C2 AQ5 . . . E 4 15.611 2.315 24.156 1 26.87 ? C2 AQ5 504 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#