data_5OTH # _model_server_result.job_id nGbSIvM4dAVuOJQQtsvQRA _model_server_result.datetime_utc '2024-11-06 22:46:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 5OTH # _exptl.entry_id 5OTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OTH _cell.length_a 64.908 _cell.length_b 67.346 _cell.length_c 333.538 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 148 n n S C1 DMS sing 149 n n S C2 DMS sing 150 n n C1 H11 DMS sing 151 n n C1 H12 DMS sing 152 n n C1 H13 DMS sing 153 n n C2 H21 DMS sing 154 n n C2 H22 DMS sing 155 n n C2 H23 DMS sing 156 n n # _atom_sites.entry_id 5OTH _atom_sites.fract_transf_matrix[1][1] 0.015406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 401 1 ACT ACT . D 2 ACT A 1 402 3 ACT ACT . E 2 ACT A 1 403 4 ACT ACT . F 3 PO4 A 1 404 1 PO4 PO4 . G 4 DMS A 1 405 1 DMS DMS . H 5 AQ8 A 1 406 1 AQ8 M55 . I 2 ACT B 1 401 2 ACT ACT . J 3 PO4 B 1 402 2 PO4 PO4 . K 5 AQ8 B 1 403 2 AQ8 M55 . L 6 HOH A 1 501 266 HOH HOH . L 6 HOH A 2 502 260 HOH HOH . L 6 HOH A 3 503 150 HOH HOH . L 6 HOH A 4 504 275 HOH HOH . L 6 HOH A 5 505 255 HOH HOH . L 6 HOH A 6 506 23 HOH HOH . L 6 HOH A 7 507 36 HOH HOH . L 6 HOH A 8 508 148 HOH HOH . L 6 HOH A 9 509 187 HOH HOH . L 6 HOH A 10 510 200 HOH HOH . L 6 HOH A 11 511 110 HOH HOH . L 6 HOH A 12 512 33 HOH HOH . L 6 HOH A 13 513 14 HOH HOH . L 6 HOH A 14 514 105 HOH HOH . L 6 HOH A 15 515 5 HOH HOH . L 6 HOH A 16 516 7 HOH HOH . L 6 HOH A 17 517 259 HOH HOH . L 6 HOH A 18 518 159 HOH HOH . L 6 HOH A 19 519 45 HOH HOH . L 6 HOH A 20 520 35 HOH HOH . L 6 HOH A 21 521 141 HOH HOH . L 6 HOH A 22 522 113 HOH HOH . L 6 HOH A 23 523 22 HOH HOH . L 6 HOH A 24 524 100 HOH HOH . L 6 HOH A 25 525 55 HOH HOH . L 6 HOH A 26 526 243 HOH HOH . L 6 HOH A 27 527 254 HOH HOH . L 6 HOH A 28 528 53 HOH HOH . L 6 HOH A 29 529 134 HOH HOH . L 6 HOH A 30 530 48 HOH HOH . L 6 HOH A 31 531 25 HOH HOH . L 6 HOH A 32 532 47 HOH HOH . L 6 HOH A 33 533 216 HOH HOH . L 6 HOH A 34 534 218 HOH HOH . L 6 HOH A 35 535 67 HOH HOH . L 6 HOH A 36 536 125 HOH HOH . L 6 HOH A 37 537 152 HOH HOH . L 6 HOH A 38 538 18 HOH HOH . L 6 HOH A 39 539 90 HOH HOH . L 6 HOH A 40 540 117 HOH HOH . L 6 HOH A 41 541 109 HOH HOH . L 6 HOH A 42 542 107 HOH HOH . L 6 HOH A 43 543 11 HOH HOH . L 6 HOH A 44 544 16 HOH HOH . L 6 HOH A 45 545 31 HOH HOH . L 6 HOH A 46 546 203 HOH HOH . L 6 HOH A 47 547 38 HOH HOH . L 6 HOH A 48 548 63 HOH HOH . L 6 HOH A 49 549 79 HOH HOH . L 6 HOH A 50 550 133 HOH HOH . L 6 HOH A 51 551 46 HOH HOH . L 6 HOH A 52 552 157 HOH HOH . L 6 HOH A 53 553 81 HOH HOH . L 6 HOH A 54 554 223 HOH HOH . L 6 HOH A 55 555 276 HOH HOH . L 6 HOH A 56 556 12 HOH HOH . L 6 HOH A 57 557 39 HOH HOH . L 6 HOH A 58 558 99 HOH HOH . L 6 HOH A 59 559 76 HOH HOH . L 6 HOH A 60 560 85 HOH HOH . L 6 HOH A 61 561 44 HOH HOH . L 6 HOH A 62 562 19 HOH HOH . L 6 HOH A 63 563 96 HOH HOH . L 6 HOH A 64 564 98 HOH HOH . L 6 HOH A 65 565 217 HOH HOH . L 6 HOH A 66 566 195 HOH HOH . L 6 HOH A 67 567 170 HOH HOH . L 6 HOH A 68 568 41 HOH HOH . L 6 HOH A 69 569 274 HOH HOH . L 6 HOH A 70 570 126 HOH HOH . L 6 HOH A 71 571 66 HOH HOH . L 6 HOH A 72 572 9 HOH HOH . L 6 HOH A 73 573 103 HOH HOH . L 6 HOH A 74 574 51 HOH HOH . L 6 HOH A 75 575 245 HOH HOH . L 6 HOH A 76 576 101 HOH HOH . L 6 HOH A 77 577 94 HOH HOH . L 6 HOH A 78 578 124 HOH HOH . L 6 HOH A 79 579 189 HOH HOH . L 6 HOH A 80 580 6 HOH HOH . L 6 HOH A 81 581 191 HOH HOH . L 6 HOH A 82 582 80 HOH HOH . L 6 HOH A 83 583 65 HOH HOH . L 6 HOH A 84 584 88 HOH HOH . L 6 HOH A 85 585 37 HOH HOH . L 6 HOH A 86 586 197 HOH HOH . L 6 HOH A 87 587 131 HOH HOH . L 6 HOH A 88 588 13 HOH HOH . L 6 HOH A 89 589 251 HOH HOH . L 6 HOH A 90 590 166 HOH HOH . L 6 HOH A 91 591 70 HOH HOH . L 6 HOH A 92 592 115 HOH HOH . L 6 HOH A 93 593 20 HOH HOH . L 6 HOH A 94 594 28 HOH HOH . L 6 HOH A 95 595 194 HOH HOH . L 6 HOH A 96 596 77 HOH HOH . L 6 HOH A 97 597 71 HOH HOH . L 6 HOH A 98 598 264 HOH HOH . L 6 HOH A 99 599 122 HOH HOH . L 6 HOH A 100 600 93 HOH HOH . L 6 HOH A 101 601 123 HOH HOH . L 6 HOH A 102 602 112 HOH HOH . L 6 HOH A 103 603 29 HOH HOH . L 6 HOH A 104 604 87 HOH HOH . L 6 HOH A 105 605 242 HOH HOH . L 6 HOH A 106 606 273 HOH HOH . L 6 HOH A 107 607 196 HOH HOH . L 6 HOH A 108 608 247 HOH HOH . L 6 HOH A 109 609 69 HOH HOH . L 6 HOH A 110 610 175 HOH HOH . L 6 HOH A 111 611 91 HOH HOH . L 6 HOH A 112 612 278 HOH HOH . L 6 HOH A 113 613 57 HOH HOH . L 6 HOH A 114 614 163 HOH HOH . L 6 HOH A 115 615 167 HOH HOH . L 6 HOH A 116 616 221 HOH HOH . L 6 HOH A 117 617 121 HOH HOH . L 6 HOH A 118 618 169 HOH HOH . L 6 HOH A 119 619 265 HOH HOH . L 6 HOH A 120 620 145 HOH HOH . L 6 HOH A 121 621 231 HOH HOH . L 6 HOH A 122 622 147 HOH HOH . L 6 HOH A 123 623 204 HOH HOH . L 6 HOH A 124 624 32 HOH HOH . L 6 HOH A 125 625 132 HOH HOH . L 6 HOH A 126 626 162 HOH HOH . L 6 HOH A 127 627 21 HOH HOH . L 6 HOH A 128 628 58 HOH HOH . L 6 HOH A 129 629 73 HOH HOH . L 6 HOH A 130 630 116 HOH HOH . L 6 HOH A 131 631 205 HOH HOH . L 6 HOH A 132 632 250 HOH HOH . L 6 HOH A 133 633 248 HOH HOH . L 6 HOH A 134 634 74 HOH HOH . L 6 HOH A 135 635 207 HOH HOH . L 6 HOH A 136 636 165 HOH HOH . L 6 HOH A 137 637 174 HOH HOH . L 6 HOH A 138 638 30 HOH HOH . L 6 HOH A 139 639 106 HOH HOH . L 6 HOH A 140 640 232 HOH HOH . L 6 HOH A 141 641 111 HOH HOH . L 6 HOH A 142 642 234 HOH HOH . L 6 HOH A 143 643 244 HOH HOH . L 6 HOH A 144 644 241 HOH HOH . L 6 HOH A 145 645 215 HOH HOH . L 6 HOH A 146 646 82 HOH HOH . L 6 HOH A 147 647 246 HOH HOH . L 6 HOH A 148 648 184 HOH HOH . L 6 HOH A 149 649 239 HOH HOH . L 6 HOH A 150 650 137 HOH HOH . L 6 HOH A 151 651 222 HOH HOH . L 6 HOH A 152 652 161 HOH HOH . L 6 HOH A 153 653 201 HOH HOH . L 6 HOH A 154 654 146 HOH HOH . L 6 HOH A 155 655 40 HOH HOH . L 6 HOH A 156 656 119 HOH HOH . L 6 HOH A 157 657 253 HOH HOH . L 6 HOH A 158 658 182 HOH HOH . L 6 HOH A 159 659 84 HOH HOH . L 6 HOH A 160 660 177 HOH HOH . L 6 HOH A 161 661 127 HOH HOH . L 6 HOH A 162 662 202 HOH HOH . L 6 HOH A 163 663 92 HOH HOH . L 6 HOH A 164 664 120 HOH HOH . L 6 HOH A 165 665 249 HOH HOH . M 6 HOH B 1 501 144 HOH HOH . M 6 HOH B 2 502 154 HOH HOH . M 6 HOH B 3 503 257 HOH HOH . M 6 HOH B 4 504 75 HOH HOH . M 6 HOH B 5 505 214 HOH HOH . M 6 HOH B 6 506 256 HOH HOH . M 6 HOH B 7 507 138 HOH HOH . M 6 HOH B 8 508 61 HOH HOH . M 6 HOH B 9 509 258 HOH HOH . M 6 HOH B 10 510 277 HOH HOH . M 6 HOH B 11 511 26 HOH HOH . M 6 HOH B 12 512 263 HOH HOH . M 6 HOH B 13 513 267 HOH HOH . M 6 HOH B 14 514 261 HOH HOH . M 6 HOH B 15 515 155 HOH HOH . M 6 HOH B 16 516 156 HOH HOH . M 6 HOH B 17 517 237 HOH HOH . M 6 HOH B 18 518 128 HOH HOH . M 6 HOH B 19 519 179 HOH HOH . M 6 HOH B 20 520 224 HOH HOH . M 6 HOH B 21 521 238 HOH HOH . M 6 HOH B 22 522 95 HOH HOH . M 6 HOH B 23 523 153 HOH HOH . M 6 HOH B 24 524 160 HOH HOH . M 6 HOH B 25 525 129 HOH HOH . M 6 HOH B 26 526 178 HOH HOH . M 6 HOH B 27 527 210 HOH HOH . M 6 HOH B 28 528 24 HOH HOH . M 6 HOH B 29 529 143 HOH HOH . M 6 HOH B 30 530 269 HOH HOH . M 6 HOH B 31 531 4 HOH HOH . M 6 HOH B 32 532 229 HOH HOH . M 6 HOH B 33 533 83 HOH HOH . M 6 HOH B 34 534 151 HOH HOH . M 6 HOH B 35 535 50 HOH HOH . M 6 HOH B 36 536 213 HOH HOH . M 6 HOH B 37 537 17 HOH HOH . M 6 HOH B 38 538 72 HOH HOH . M 6 HOH B 39 539 227 HOH HOH . M 6 HOH B 40 540 104 HOH HOH . M 6 HOH B 41 541 192 HOH HOH . M 6 HOH B 42 542 34 HOH HOH . M 6 HOH B 43 543 270 HOH HOH . M 6 HOH B 44 544 230 HOH HOH . M 6 HOH B 45 545 176 HOH HOH . M 6 HOH B 46 546 252 HOH HOH . M 6 HOH B 47 547 206 HOH HOH . M 6 HOH B 48 548 173 HOH HOH . M 6 HOH B 49 549 172 HOH HOH . M 6 HOH B 50 550 130 HOH HOH . M 6 HOH B 51 551 209 HOH HOH . M 6 HOH B 52 552 190 HOH HOH . M 6 HOH B 53 553 271 HOH HOH . M 6 HOH B 54 554 139 HOH HOH . M 6 HOH B 55 555 171 HOH HOH . M 6 HOH B 56 556 158 HOH HOH . M 6 HOH B 57 557 235 HOH HOH . M 6 HOH B 58 558 108 HOH HOH . M 6 HOH B 59 559 272 HOH HOH . M 6 HOH B 60 560 185 HOH HOH . M 6 HOH B 61 561 233 HOH HOH . M 6 HOH B 62 562 168 HOH HOH . M 6 HOH B 63 563 183 HOH HOH . M 6 HOH B 64 564 114 HOH HOH . M 6 HOH B 65 565 78 HOH HOH . M 6 HOH B 66 566 211 HOH HOH . M 6 HOH B 67 567 164 HOH HOH . M 6 HOH B 68 568 97 HOH HOH . M 6 HOH B 69 569 188 HOH HOH . M 6 HOH B 70 570 181 HOH HOH . M 6 HOH B 71 571 220 HOH HOH . M 6 HOH B 72 572 268 HOH HOH . M 6 HOH B 73 573 212 HOH HOH . M 6 HOH B 74 574 208 HOH HOH . M 6 HOH B 75 575 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 4 29.56 138.456 343.59 1 66.53 ? S DMS 405 A 1 HETATM 2 O O DMS . . . G 4 28.631 138.664 344.728 1 65.83 ? O DMS 405 A 1 HETATM 3 C C1 DMS . . . G 4 29.468 136.712 343.221 1 65.54 ? C1 DMS 405 A 1 HETATM 4 C C2 DMS . . . G 4 28.777 139.171 342.165 1 62.61 ? C2 DMS 405 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #