data_5OTM # _model_server_result.job_id 6adAoKw11Ew2W1vNbMidqg _model_server_result.datetime_utc '2024-12-01 12:05:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5otm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":205}' # _entry.id 5OTM # _exptl.entry_id 5OTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 361.248 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OTM _cell.length_a 59.581 _cell.length_b 67.237 _cell.length_c 79.025 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 M N N # _chem_comp.formula 'C11 H16 N5 O7 P' _chem_comp.formula_weight 361.248 _chem_comp.id 6OG _chem_comp.mon_nstd_flag n _chem_comp.name "6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P OP1 6OG doub 1 n n P OP2 6OG sing 2 n n P O5' 6OG sing 3 n n OP2 HOP2 6OG sing 4 n n O5' C5' 6OG sing 5 n n N9 C4 6OG sing 6 n y N9 C8 6OG sing 7 n y N9 C1' 6OG sing 8 n n C4 N3 6OG sing 9 n y C4 C5 6OG doub 10 n y N3 C2 6OG doub 11 n y C2 N2 6OG sing 12 n n C2 N1 6OG sing 13 n y N2 HN21 6OG sing 14 n n N2 HN22 6OG sing 15 n n N1 C6 6OG doub 16 n y C6 O6 6OG sing 17 n n C6 C5 6OG sing 18 n y O6 C 6OG sing 19 n n C5 N7 6OG sing 20 n y N7 C8 6OG doub 21 n y C8 H8 6OG sing 22 n n C2' C1' 6OG sing 23 n n C2' C3' 6OG sing 24 n n C2' H2' 6OG sing 25 n n C2' "H2''" 6OG sing 26 n n C5' C4' 6OG sing 27 n n C5' H5' 6OG sing 28 n n C5' "H5''" 6OG sing 29 n n C4' O4' 6OG sing 30 n n C4' C3' 6OG sing 31 n n C4' H4' 6OG sing 32 n n O4' C1' 6OG sing 33 n n C1' H1' 6OG sing 34 n n C3' O3' 6OG sing 35 n n C3' H3' 6OG sing 36 n n O3' HO3' 6OG sing 37 n n C H1 6OG sing 38 n n C H2 6OG sing 39 n n C H3 6OG sing 40 n n P OP3 6OG sing 41 n n OP3 HOP3 6OG sing 42 n n # _atom_sites.entry_id 5OTM _atom_sites.fract_transf_matrix[1][1] 0.016784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 201 1 SO4 SO4 . D 2 SO4 A 1 202 6 SO4 SO4 . E 2 SO4 A 1 203 7 SO4 SO4 . F 2 SO4 A 1 204 8 SO4 SO4 . G 3 ACT A 1 205 9 ACT ACT . H 4 6OG A 1 206 2 6OG O6M . I 2 SO4 B 1 201 2 SO4 SO4 . J 2 SO4 B 1 202 3 SO4 SO4 . K 2 SO4 B 1 203 4 SO4 SO4 . L 2 SO4 B 1 204 5 SO4 SO4 . M 4 6OG B 1 205 1 6OG O6M . N 5 HOH A 1 301 199 HOH HOH . N 5 HOH A 2 302 165 HOH HOH . N 5 HOH A 3 303 49 HOH HOH . N 5 HOH A 4 304 28 HOH HOH . N 5 HOH A 5 305 78 HOH HOH . N 5 HOH A 6 306 174 HOH HOH . N 5 HOH A 7 307 42 HOH HOH . N 5 HOH A 8 308 210 HOH HOH . N 5 HOH A 9 309 166 HOH HOH . N 5 HOH A 10 310 162 HOH HOH . N 5 HOH A 11 311 31 HOH HOH . N 5 HOH A 12 312 137 HOH HOH . N 5 HOH A 13 313 189 HOH HOH . N 5 HOH A 14 314 207 HOH HOH . N 5 HOH A 15 315 212 HOH HOH . N 5 HOH A 16 316 47 HOH HOH . N 5 HOH A 17 317 163 HOH HOH . N 5 HOH A 18 318 155 HOH HOH . N 5 HOH A 19 319 205 HOH HOH . N 5 HOH A 20 320 7 HOH HOH . N 5 HOH A 21 321 113 HOH HOH . N 5 HOH A 22 322 110 HOH HOH . N 5 HOH A 23 323 192 HOH HOH . N 5 HOH A 24 324 132 HOH HOH . N 5 HOH A 25 325 229 HOH HOH . N 5 HOH A 26 326 220 HOH HOH . N 5 HOH A 27 327 38 HOH HOH . N 5 HOH A 28 328 46 HOH HOH . N 5 HOH A 29 329 225 HOH HOH . N 5 HOH A 30 330 183 HOH HOH . N 5 HOH A 31 331 2 HOH HOH . N 5 HOH A 32 332 230 HOH HOH . N 5 HOH A 33 333 136 HOH HOH . N 5 HOH A 34 334 63 HOH HOH . N 5 HOH A 35 335 56 HOH HOH . N 5 HOH A 36 336 60 HOH HOH . N 5 HOH A 37 337 126 HOH HOH . N 5 HOH A 38 338 190 HOH HOH . N 5 HOH A 39 339 202 HOH HOH . N 5 HOH A 40 340 181 HOH HOH . N 5 HOH A 41 341 206 HOH HOH . N 5 HOH A 42 342 41 HOH HOH . N 5 HOH A 43 343 193 HOH HOH . N 5 HOH A 44 344 67 HOH HOH . N 5 HOH A 45 345 19 HOH HOH . N 5 HOH A 46 346 228 HOH HOH . N 5 HOH A 47 347 36 HOH HOH . N 5 HOH A 48 348 171 HOH HOH . N 5 HOH A 49 349 26 HOH HOH . N 5 HOH A 50 350 75 HOH HOH . N 5 HOH A 51 351 35 HOH HOH . N 5 HOH A 52 352 239 HOH HOH . N 5 HOH A 53 353 234 HOH HOH . N 5 HOH A 54 354 157 HOH HOH . N 5 HOH A 55 355 14 HOH HOH . N 5 HOH A 56 356 195 HOH HOH . N 5 HOH A 57 357 139 HOH HOH . N 5 HOH A 58 358 169 HOH HOH . N 5 HOH A 59 359 135 HOH HOH . N 5 HOH A 60 360 25 HOH HOH . N 5 HOH A 61 361 54 HOH HOH . N 5 HOH A 62 362 112 HOH HOH . N 5 HOH A 63 363 176 HOH HOH . N 5 HOH A 64 364 170 HOH HOH . N 5 HOH A 65 365 184 HOH HOH . N 5 HOH A 66 366 172 HOH HOH . N 5 HOH A 67 367 74 HOH HOH . N 5 HOH A 68 368 45 HOH HOH . N 5 HOH A 69 369 6 HOH HOH . N 5 HOH A 70 370 160 HOH HOH . N 5 HOH A 71 371 208 HOH HOH . N 5 HOH A 72 372 204 HOH HOH . N 5 HOH A 73 373 213 HOH HOH . N 5 HOH A 74 374 159 HOH HOH . N 5 HOH A 75 375 144 HOH HOH . N 5 HOH A 76 376 8 HOH HOH . N 5 HOH A 77 377 145 HOH HOH . N 5 HOH A 78 378 200 HOH HOH . N 5 HOH A 79 379 223 HOH HOH . N 5 HOH A 80 380 173 HOH HOH . N 5 HOH A 81 381 3 HOH HOH . N 5 HOH A 82 382 70 HOH HOH . N 5 HOH A 83 383 211 HOH HOH . N 5 HOH A 84 384 9 HOH HOH . N 5 HOH A 85 385 168 HOH HOH . N 5 HOH A 86 386 80 HOH HOH . N 5 HOH A 87 387 209 HOH HOH . N 5 HOH A 88 388 20 HOH HOH . N 5 HOH A 89 389 68 HOH HOH . N 5 HOH A 90 390 187 HOH HOH . N 5 HOH A 91 391 156 HOH HOH . N 5 HOH A 92 392 196 HOH HOH . N 5 HOH A 93 393 185 HOH HOH . N 5 HOH A 94 394 178 HOH HOH . N 5 HOH A 95 395 22 HOH HOH . N 5 HOH A 96 396 142 HOH HOH . N 5 HOH A 97 397 30 HOH HOH . N 5 HOH A 98 398 43 HOH HOH . N 5 HOH A 99 399 69 HOH HOH . N 5 HOH A 100 400 109 HOH HOH . N 5 HOH A 101 401 15 HOH HOH . N 5 HOH A 102 402 77 HOH HOH . N 5 HOH A 103 403 23 HOH HOH . N 5 HOH A 104 404 108 HOH HOH . N 5 HOH A 105 405 197 HOH HOH . N 5 HOH A 106 406 44 HOH HOH . N 5 HOH A 107 407 203 HOH HOH . N 5 HOH A 108 408 158 HOH HOH . N 5 HOH A 109 409 164 HOH HOH . N 5 HOH A 110 410 235 HOH HOH . N 5 HOH A 111 411 76 HOH HOH . N 5 HOH A 112 412 232 HOH HOH . N 5 HOH A 113 413 179 HOH HOH . N 5 HOH A 114 414 191 HOH HOH . N 5 HOH A 115 415 194 HOH HOH . N 5 HOH A 116 416 152 HOH HOH . N 5 HOH A 117 417 201 HOH HOH . N 5 HOH A 118 418 161 HOH HOH . N 5 HOH A 119 419 111 HOH HOH . N 5 HOH A 120 420 114 HOH HOH . N 5 HOH A 121 421 175 HOH HOH . N 5 HOH A 122 422 231 HOH HOH . N 5 HOH A 123 423 219 HOH HOH . N 5 HOH A 124 424 143 HOH HOH . N 5 HOH A 125 425 32 HOH HOH . N 5 HOH A 126 426 61 HOH HOH . N 5 HOH A 127 427 198 HOH HOH . N 5 HOH A 128 428 177 HOH HOH . N 5 HOH A 129 429 153 HOH HOH . N 5 HOH A 130 430 167 HOH HOH . O 5 HOH B 1 301 214 HOH HOH . O 5 HOH B 2 302 88 HOH HOH . O 5 HOH B 3 303 51 HOH HOH . O 5 HOH B 4 304 127 HOH HOH . O 5 HOH B 5 305 151 HOH HOH . O 5 HOH B 6 306 53 HOH HOH . O 5 HOH B 7 307 87 HOH HOH . O 5 HOH B 8 308 52 HOH HOH . O 5 HOH B 9 309 21 HOH HOH . O 5 HOH B 10 310 241 HOH HOH . O 5 HOH B 11 311 237 HOH HOH . O 5 HOH B 12 312 101 HOH HOH . O 5 HOH B 13 313 138 HOH HOH . O 5 HOH B 14 314 131 HOH HOH . O 5 HOH B 15 315 66 HOH HOH . O 5 HOH B 16 316 224 HOH HOH . O 5 HOH B 17 317 218 HOH HOH . O 5 HOH B 18 318 84 HOH HOH . O 5 HOH B 19 319 118 HOH HOH . O 5 HOH B 20 320 12 HOH HOH . O 5 HOH B 21 321 79 HOH HOH . O 5 HOH B 22 322 27 HOH HOH . O 5 HOH B 23 323 102 HOH HOH . O 5 HOH B 24 324 59 HOH HOH . O 5 HOH B 25 325 89 HOH HOH . O 5 HOH B 26 326 128 HOH HOH . O 5 HOH B 27 327 106 HOH HOH . O 5 HOH B 28 328 81 HOH HOH . O 5 HOH B 29 329 71 HOH HOH . O 5 HOH B 30 330 4 HOH HOH . O 5 HOH B 31 331 103 HOH HOH . O 5 HOH B 32 332 95 HOH HOH . O 5 HOH B 33 333 11 HOH HOH . O 5 HOH B 34 334 86 HOH HOH . O 5 HOH B 35 335 37 HOH HOH . O 5 HOH B 36 336 48 HOH HOH . O 5 HOH B 37 337 62 HOH HOH . O 5 HOH B 38 338 92 HOH HOH . O 5 HOH B 39 339 123 HOH HOH . O 5 HOH B 40 340 180 HOH HOH . O 5 HOH B 41 341 105 HOH HOH . O 5 HOH B 42 342 122 HOH HOH . O 5 HOH B 43 343 130 HOH HOH . O 5 HOH B 44 344 72 HOH HOH . O 5 HOH B 45 345 226 HOH HOH . O 5 HOH B 46 346 140 HOH HOH . O 5 HOH B 47 347 104 HOH HOH . O 5 HOH B 48 348 242 HOH HOH . O 5 HOH B 49 349 116 HOH HOH . O 5 HOH B 50 350 133 HOH HOH . O 5 HOH B 51 351 39 HOH HOH . O 5 HOH B 52 352 83 HOH HOH . O 5 HOH B 53 353 17 HOH HOH . O 5 HOH B 54 354 134 HOH HOH . O 5 HOH B 55 355 55 HOH HOH . O 5 HOH B 56 356 13 HOH HOH . O 5 HOH B 57 357 29 HOH HOH . O 5 HOH B 58 358 100 HOH HOH . O 5 HOH B 59 359 82 HOH HOH . O 5 HOH B 60 360 24 HOH HOH . O 5 HOH B 61 361 57 HOH HOH . O 5 HOH B 62 362 10 HOH HOH . O 5 HOH B 63 363 34 HOH HOH . O 5 HOH B 64 364 91 HOH HOH . O 5 HOH B 65 365 94 HOH HOH . O 5 HOH B 66 366 98 HOH HOH . O 5 HOH B 67 367 96 HOH HOH . O 5 HOH B 68 368 121 HOH HOH . O 5 HOH B 69 369 150 HOH HOH . O 5 HOH B 70 370 240 HOH HOH . O 5 HOH B 71 371 73 HOH HOH . O 5 HOH B 72 372 85 HOH HOH . O 5 HOH B 73 373 33 HOH HOH . O 5 HOH B 74 374 129 HOH HOH . O 5 HOH B 75 375 107 HOH HOH . O 5 HOH B 76 376 148 HOH HOH . O 5 HOH B 77 377 120 HOH HOH . O 5 HOH B 78 378 93 HOH HOH . O 5 HOH B 79 379 215 HOH HOH . O 5 HOH B 80 380 146 HOH HOH . O 5 HOH B 81 381 5 HOH HOH . O 5 HOH B 82 382 18 HOH HOH . O 5 HOH B 83 383 40 HOH HOH . O 5 HOH B 84 384 125 HOH HOH . O 5 HOH B 85 385 217 HOH HOH . O 5 HOH B 86 386 16 HOH HOH . O 5 HOH B 87 387 221 HOH HOH . O 5 HOH B 88 388 90 HOH HOH . O 5 HOH B 89 389 97 HOH HOH . O 5 HOH B 90 390 236 HOH HOH . O 5 HOH B 91 391 58 HOH HOH . O 5 HOH B 92 392 1 HOH HOH . O 5 HOH B 93 393 99 HOH HOH . O 5 HOH B 94 394 216 HOH HOH . O 5 HOH B 95 395 119 HOH HOH . O 5 HOH B 96 396 238 HOH HOH . O 5 HOH B 97 397 188 HOH HOH . O 5 HOH B 98 398 124 HOH HOH . O 5 HOH B 99 399 147 HOH HOH . O 5 HOH B 100 400 233 HOH HOH . O 5 HOH B 101 401 115 HOH HOH . O 5 HOH B 102 402 154 HOH HOH . O 5 HOH B 103 403 186 HOH HOH . O 5 HOH B 104 404 64 HOH HOH . O 5 HOH B 105 405 182 HOH HOH . O 5 HOH B 106 406 141 HOH HOH . O 5 HOH B 107 407 50 HOH HOH . O 5 HOH B 108 408 227 HOH HOH . O 5 HOH B 109 409 149 HOH HOH . O 5 HOH B 110 410 117 HOH HOH . O 5 HOH B 111 411 65 HOH HOH . O 5 HOH B 112 412 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 6OG . . . M 4 35.764 13.251 -14.856 1 28.87 ? P 6OG 205 B 1 HETATM 2 O OP1 6OG . . . M 4 35.825 13.348 -16.363 1 28.39 ? OP1 6OG 205 B 1 HETATM 3 O OP2 6OG . . . M 4 35.152 14.517 -14.295 1 29.15 ? OP2 6OG 205 B 1 HETATM 4 O O5' 6OG . . . M 4 34.908 12.003 -14.441 1 27.03 ? O5' 6OG 205 B 1 HETATM 5 N N9 6OG . . . M 4 29.589 10.79 -14.296 1 23.07 ? N9 6OG 205 B 1 HETATM 6 C C4 6OG . . . M 4 28.245 11.1 -14.176 1 22.72 ? C4 6OG 205 B 1 HETATM 7 N N3 6OG . . . M 4 27.499 11.625 -13.138 1 21.54 ? N3 6OG 205 B 1 HETATM 8 C C2 6OG . . . M 4 26.168 11.801 -13.267 1 21.44 ? C2 6OG 205 B 1 HETATM 9 N N2 6OG . . . M 4 25.423 12.345 -12.176 1 20.23 ? N2 6OG 205 B 1 HETATM 10 N N1 6OG . . . M 4 25.53 11.475 -14.399 1 20.69 ? N1 6OG 205 B 1 HETATM 11 C C6 6OG . . . M 4 26.206 10.962 -15.446 1 21.87 ? C6 6OG 205 B 1 HETATM 12 O O6 6OG . . . M 4 25.489 10.646 -16.567 1 22.48 ? O6 6OG 205 B 1 HETATM 13 C C5 6OG . . . M 4 27.625 10.744 -15.351 1 22.67 ? C5 6OG 205 B 1 HETATM 14 N N7 6OG . . . M 4 28.604 10.238 -16.196 1 22.91 ? N7 6OG 205 B 1 HETATM 15 C C8 6OG . . . M 4 29.791 10.292 -15.538 1 23.5 ? C8 6OG 205 B 1 HETATM 16 C C2' 6OG . . . M 4 31.628 10.069 -12.998 1 23.72 ? C2' 6OG 205 B 1 HETATM 17 C C5' 6OG . . . M 4 33.54 11.924 -14.656 1 25.38 ? C5' 6OG 205 B 1 HETATM 18 C C4' 6OG . . . M 4 32.633 12.061 -13.476 1 24.41 ? C4' 6OG 205 B 1 HETATM 19 O O4' 6OG . . . M 4 31.292 12.159 -13.839 1 24.26 ? O4' 6OG 205 B 1 HETATM 20 C C1' 6OG . . . M 4 30.58 11.075 -13.309 1 23.44 ? C1' 6OG 205 B 1 HETATM 21 C C3' 6OG . . . M 4 32.695 10.877 -12.572 1 23.87 ? C3' 6OG 205 B 1 HETATM 22 O O3' 6OG . . . M 4 32.507 11.35 -11.267 1 22.66 ? O3' 6OG 205 B 1 HETATM 23 C C 6OG . . . M 4 26.021 10.629 -17.841 1 22.68 ? C 6OG 205 B 1 HETATM 24 O OP3 6OG . . . M 4 37.173 13.063 -14.321 1 28.61 ? OP3 6OG 205 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #