data_5OTN # _model_server_result.job_id GmugUAJyILreyqjhY6DZLQ _model_server_result.datetime_utc '2024-12-01 08:57:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5otn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5OTN # _exptl.entry_id 5OTN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OTN _cell.length_a 44.528 _cell.length_b 55.379 _cell.length_c 65.92 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 39 A GLY 36 1_555 L CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc2 A OE1 GLU 55 A GLU 52 1_555 M CA CA . A CA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 A OE2 GLU 55 A GLU 52 1_555 M CA CA . A CA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc4 A OE1 GLU 58 A GLU 55 1_555 M CA CA . A CA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc5 A OE1 GLU 59 A GLU 56 1_555 L CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc6 A OE2 GLU 59 A GLU 56 1_555 L CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc7 A OD2 ASP 65 A ASP 62 1_555 M CA CA . A CA 212 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc8 A OD1 ASP 65 A ASP 62 1_555 N CA CA . A CA 213 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc9 A OE2 GLU 95 A GLU 92 1_555 M CA CA . A CA 212 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc10 A OE1 GLU 95 A GLU 92 1_555 N CA CA . A CA 213 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc11 A OE2 GLU 95 A GLU 92 1_555 N CA CA . A CA 213 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc12 A OE2 GLU 103 A GLU 100 1_555 L CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc13 A OE1 GLU 103 A GLU 100 1_555 N CA CA . A CA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc14 B OP1 6OG . A 6OG 201 1_555 L CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc15 F O2 GOL . A GOL 205 1_555 N CA CA . A CA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc16 F O3 GOL . A GOL 205 1_555 N CA CA . A CA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc17 L CA CA . A CA 211 1_555 S O HOH . A HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc18 L CA CA . A CA 211 1_555 S O HOH . A HOH 428 4_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc19 M CA CA . A CA 212 1_555 S O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc20 M CA CA . A CA 212 1_555 S O HOH . A HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc21 N CA CA . A CA 213 1_555 S O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc22 N CA CA . A CA 213 1_555 S O HOH . A HOH 428 4_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 167 n n C1 C2 GOL sing 168 n n C1 H11 GOL sing 169 n n C1 H12 GOL sing 170 n n O1 HO1 GOL sing 171 n n C2 O2 GOL sing 172 n n C2 C3 GOL sing 173 n n C2 H2 GOL sing 174 n n O2 HO2 GOL sing 175 n n C3 O3 GOL sing 176 n n C3 H31 GOL sing 177 n n C3 H32 GOL sing 178 n n O3 HO3 GOL sing 179 n n # _atom_sites.entry_id 5OTN _atom_sites.fract_transf_matrix[1][1] 0.022458 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6OG A 1 201 1 6OG O6M . C 3 GOL A 1 202 1 GOL GOL . D 3 GOL A 1 203 2 GOL GOL . E 3 GOL A 1 204 3 GOL GOL . F 3 GOL A 1 205 4 GOL GOL . G 3 GOL A 1 206 5 GOL GOL . H 3 GOL A 1 207 6 GOL GOL . I 3 GOL A 1 208 7 GOL GOL . J 3 GOL A 1 209 8 GOL GOL . K 3 GOL A 1 210 9 GOL GOL . L 4 CA A 1 211 10 CA CA . M 4 CA A 1 212 11 CA CA . N 4 CA A 1 213 12 CA CA . O 5 EDO A 1 214 13 EDO EDO . P 5 EDO A 1 215 14 EDO EDO . Q 5 EDO A 1 216 15 EDO EDO . R 6 CL A 1 217 16 CL CL . S 7 HOH A 1 301 106 HOH HOH . S 7 HOH A 2 302 67 HOH HOH . S 7 HOH A 3 303 31 HOH HOH . S 7 HOH A 4 304 144 HOH HOH . S 7 HOH A 5 305 163 HOH HOH . S 7 HOH A 6 306 117 HOH HOH . S 7 HOH A 7 307 116 HOH HOH . S 7 HOH A 8 308 156 HOH HOH . S 7 HOH A 9 309 105 HOH HOH . S 7 HOH A 10 310 120 HOH HOH . S 7 HOH A 11 311 121 HOH HOH . S 7 HOH A 12 312 41 HOH HOH . S 7 HOH A 13 313 101 HOH HOH . S 7 HOH A 14 314 154 HOH HOH . S 7 HOH A 15 315 146 HOH HOH . S 7 HOH A 16 316 95 HOH HOH . S 7 HOH A 17 317 92 HOH HOH . S 7 HOH A 18 318 99 HOH HOH . S 7 HOH A 19 319 113 HOH HOH . S 7 HOH A 20 320 142 HOH HOH . S 7 HOH A 21 321 96 HOH HOH . S 7 HOH A 22 322 143 HOH HOH . S 7 HOH A 23 323 97 HOH HOH . S 7 HOH A 24 324 158 HOH HOH . S 7 HOH A 25 325 151 HOH HOH . S 7 HOH A 26 326 89 HOH HOH . S 7 HOH A 27 327 122 HOH HOH . S 7 HOH A 28 328 69 HOH HOH . S 7 HOH A 29 329 86 HOH HOH . S 7 HOH A 30 330 19 HOH HOH . S 7 HOH A 31 331 1 HOH HOH . S 7 HOH A 32 332 9 HOH HOH . S 7 HOH A 33 333 119 HOH HOH . S 7 HOH A 34 334 6 HOH HOH . S 7 HOH A 35 335 27 HOH HOH . S 7 HOH A 36 336 160 HOH HOH . S 7 HOH A 37 337 137 HOH HOH . S 7 HOH A 38 338 70 HOH HOH . S 7 HOH A 39 339 50 HOH HOH . S 7 HOH A 40 340 76 HOH HOH . S 7 HOH A 41 341 29 HOH HOH . S 7 HOH A 42 342 123 HOH HOH . S 7 HOH A 43 343 33 HOH HOH . S 7 HOH A 44 344 5 HOH HOH . S 7 HOH A 45 345 25 HOH HOH . S 7 HOH A 46 346 134 HOH HOH . S 7 HOH A 47 347 52 HOH HOH . S 7 HOH A 48 348 64 HOH HOH . S 7 HOH A 49 349 2 HOH HOH . S 7 HOH A 50 350 66 HOH HOH . S 7 HOH A 51 351 57 HOH HOH . S 7 HOH A 52 352 22 HOH HOH . S 7 HOH A 53 353 39 HOH HOH . S 7 HOH A 54 354 104 HOH HOH . S 7 HOH A 55 355 161 HOH HOH . S 7 HOH A 56 356 44 HOH HOH . S 7 HOH A 57 357 90 HOH HOH . S 7 HOH A 58 358 155 HOH HOH . S 7 HOH A 59 359 53 HOH HOH . S 7 HOH A 60 360 11 HOH HOH . S 7 HOH A 61 361 56 HOH HOH . S 7 HOH A 62 362 85 HOH HOH . S 7 HOH A 63 363 26 HOH HOH . S 7 HOH A 64 364 87 HOH HOH . S 7 HOH A 65 365 38 HOH HOH . S 7 HOH A 66 366 139 HOH HOH . S 7 HOH A 67 367 43 HOH HOH . S 7 HOH A 68 368 42 HOH HOH . S 7 HOH A 69 369 63 HOH HOH . S 7 HOH A 70 370 46 HOH HOH . S 7 HOH A 71 371 68 HOH HOH . S 7 HOH A 72 372 24 HOH HOH . S 7 HOH A 73 373 21 HOH HOH . S 7 HOH A 74 374 17 HOH HOH . S 7 HOH A 75 375 65 HOH HOH . S 7 HOH A 76 376 136 HOH HOH . S 7 HOH A 77 377 35 HOH HOH . S 7 HOH A 78 378 7 HOH HOH . S 7 HOH A 79 379 37 HOH HOH . S 7 HOH A 80 380 32 HOH HOH . S 7 HOH A 81 381 74 HOH HOH . S 7 HOH A 82 382 111 HOH HOH . S 7 HOH A 83 383 72 HOH HOH . S 7 HOH A 84 384 112 HOH HOH . S 7 HOH A 85 385 77 HOH HOH . S 7 HOH A 86 386 157 HOH HOH . S 7 HOH A 87 387 8 HOH HOH . S 7 HOH A 88 388 61 HOH HOH . S 7 HOH A 89 389 84 HOH HOH . S 7 HOH A 90 390 20 HOH HOH . S 7 HOH A 91 391 13 HOH HOH . S 7 HOH A 92 392 127 HOH HOH . S 7 HOH A 93 393 140 HOH HOH . S 7 HOH A 94 394 102 HOH HOH . S 7 HOH A 95 395 59 HOH HOH . S 7 HOH A 96 396 62 HOH HOH . S 7 HOH A 97 397 12 HOH HOH . S 7 HOH A 98 398 162 HOH HOH . S 7 HOH A 99 399 49 HOH HOH . S 7 HOH A 100 400 128 HOH HOH . S 7 HOH A 101 401 55 HOH HOH . S 7 HOH A 102 402 98 HOH HOH . S 7 HOH A 103 403 93 HOH HOH . S 7 HOH A 104 404 132 HOH HOH . S 7 HOH A 105 405 45 HOH HOH . S 7 HOH A 106 406 129 HOH HOH . S 7 HOH A 107 407 73 HOH HOH . S 7 HOH A 108 408 47 HOH HOH . S 7 HOH A 109 409 18 HOH HOH . S 7 HOH A 110 410 75 HOH HOH . S 7 HOH A 111 411 131 HOH HOH . S 7 HOH A 112 412 152 HOH HOH . S 7 HOH A 113 413 82 HOH HOH . S 7 HOH A 114 414 36 HOH HOH . S 7 HOH A 115 415 40 HOH HOH . S 7 HOH A 116 416 16 HOH HOH . S 7 HOH A 117 417 10 HOH HOH . S 7 HOH A 118 418 100 HOH HOH . S 7 HOH A 119 419 30 HOH HOH . S 7 HOH A 120 420 88 HOH HOH . S 7 HOH A 121 421 94 HOH HOH . S 7 HOH A 122 422 14 HOH HOH . S 7 HOH A 123 423 23 HOH HOH . S 7 HOH A 124 424 91 HOH HOH . S 7 HOH A 125 425 126 HOH HOH . S 7 HOH A 126 426 4 HOH HOH . S 7 HOH A 127 427 34 HOH HOH . S 7 HOH A 128 428 3 HOH HOH . S 7 HOH A 129 429 48 HOH HOH . S 7 HOH A 130 430 141 HOH HOH . S 7 HOH A 131 431 78 HOH HOH . S 7 HOH A 132 432 145 HOH HOH . S 7 HOH A 133 433 133 HOH HOH . S 7 HOH A 134 434 115 HOH HOH . S 7 HOH A 135 435 15 HOH HOH . S 7 HOH A 136 436 103 HOH HOH . S 7 HOH A 137 437 124 HOH HOH . S 7 HOH A 138 438 58 HOH HOH . S 7 HOH A 139 439 54 HOH HOH . S 7 HOH A 140 440 109 HOH HOH . S 7 HOH A 141 441 107 HOH HOH . S 7 HOH A 142 442 51 HOH HOH . S 7 HOH A 143 443 159 HOH HOH . S 7 HOH A 144 444 80 HOH HOH . S 7 HOH A 145 445 147 HOH HOH . S 7 HOH A 146 446 28 HOH HOH . S 7 HOH A 147 447 110 HOH HOH . S 7 HOH A 148 448 79 HOH HOH . S 7 HOH A 149 449 60 HOH HOH . S 7 HOH A 150 450 135 HOH HOH . S 7 HOH A 151 451 130 HOH HOH . S 7 HOH A 152 452 138 HOH HOH . S 7 HOH A 153 453 149 HOH HOH . S 7 HOH A 154 454 153 HOH HOH . S 7 HOH A 155 455 108 HOH HOH . S 7 HOH A 156 456 83 HOH HOH . S 7 HOH A 157 457 71 HOH HOH . S 7 HOH A 158 458 114 HOH HOH . S 7 HOH A 159 459 118 HOH HOH . S 7 HOH A 160 460 125 HOH HOH . S 7 HOH A 161 461 81 HOH HOH . S 7 HOH A 162 462 150 HOH HOH . S 7 HOH A 163 463 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 8.492 4.103 -10.262 1 20.51 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . E 3 7.929 2.937 -9.622 1 18.64 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . E 3 8.276 5.352 -9.432 1 18.29 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . E 3 6.88 5.642 -9.533 1 17.76 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . E 3 9.023 6.557 -10.005 1 19.67 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . E 3 10.414 6.612 -9.69 1 20.79 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #