data_5OTQ # _model_server_result.job_id 2zuCoIR8idhrXxA6-sNPQQ _model_server_result.datetime_utc '2024-11-06 13:25:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5otq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5OTQ # _exptl.entry_id 5OTQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.501 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1~{H}-benzimidazol-2-yl)-~{N}-[[4-(2-ethylphenyl)-3-methoxy-phenyl]methyl]ethanamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.53 _cell.angle_gamma 90 _cell.entry_id 5OTQ _cell.length_a 59.896 _cell.length_b 44.985 _cell.length_c 63.472 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OTQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C25 H27 N3 O' _chem_comp.formula_weight 385.501 _chem_comp.id AUH _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1~{H}-benzimidazol-2-yl)-~{N}-[[4-(2-ethylphenyl)-3-methoxy-phenyl]methyl]ethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C19 AUH doub 76 n y C20 C21 AUH sing 77 n y C19 C18 AUH sing 78 n y N2 C21 AUH sing 79 n y N2 C15 AUH doub 80 n y C21 C16 AUH doub 81 n y C18 C17 AUH doub 82 n y C14 C15 AUH sing 83 n n C14 C13 AUH sing 84 n n C15 N1 AUH sing 85 n y C16 C17 AUH sing 86 n y C16 N1 AUH sing 87 n y C5 C6 AUH doub 88 n y C5 C4 AUH sing 89 n y C6 C7 AUH sing 90 n y C13 N AUH sing 91 n n N C12 AUH sing 92 n n C4 C3 AUH doub 93 n y C7 C8 AUH sing 94 n n C7 C2 AUH doub 95 n y C12 C11 AUH sing 96 n n C11 C22 AUH doub 97 n y C11 C10 AUH sing 98 n y C22 C23 AUH sing 99 n y C8 C9 AUH sing 100 n y C8 C23 AUH doub 101 n y C10 C9 AUH doub 102 n y C23 O AUH sing 103 n n O C24 AUH sing 104 n n C3 C2 AUH sing 105 n y C2 C1 AUH sing 106 n n C1 C AUH sing 107 n n C1 H1 AUH sing 108 n n C1 H2 AUH sing 109 n n N1 H3 AUH sing 110 n n C3 H5 AUH sing 111 n n C4 H6 AUH sing 112 n n C5 H7 AUH sing 113 n n C6 H8 AUH sing 114 n n C9 H9 AUH sing 115 n n C10 H10 AUH sing 116 n n C12 H11 AUH sing 117 n n C12 H12 AUH sing 118 n n C13 H13 AUH sing 119 n n C13 H14 AUH sing 120 n n C14 H15 AUH sing 121 n n C14 H16 AUH sing 122 n n C17 H17 AUH sing 123 n n C18 H18 AUH sing 124 n n C19 H19 AUH sing 125 n n C20 H20 AUH sing 126 n n C22 H21 AUH sing 127 n n C24 H22 AUH sing 128 n n C24 H23 AUH sing 129 n n C24 H24 AUH sing 130 n n C H25 AUH sing 131 n n C H26 AUH sing 132 n n C H27 AUH sing 133 n n N H28 AUH sing 134 n n # _atom_sites.entry_id 5OTQ _atom_sites.fract_transf_matrix[1][1] 0.016696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006587 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 1 ACT ACT . C 2 ACT A 1 402 2 ACT ACT . D 3 AUH A 1 403 1 AUH M91 . E 3 AUH A 1 404 2 AUH M91 . F 4 HOH A 1 501 248 HOH HOH . F 4 HOH A 2 502 75 HOH HOH . F 4 HOH A 3 503 111 HOH HOH . F 4 HOH A 4 504 117 HOH HOH . F 4 HOH A 5 505 66 HOH HOH . F 4 HOH A 6 506 237 HOH HOH . F 4 HOH A 7 507 195 HOH HOH . F 4 HOH A 8 508 199 HOH HOH . F 4 HOH A 9 509 233 HOH HOH . F 4 HOH A 10 510 231 HOH HOH . F 4 HOH A 11 511 81 HOH HOH . F 4 HOH A 12 512 146 HOH HOH . F 4 HOH A 13 513 14 HOH HOH . F 4 HOH A 14 514 243 HOH HOH . F 4 HOH A 15 515 256 HOH HOH . F 4 HOH A 16 516 232 HOH HOH . F 4 HOH A 17 517 18 HOH HOH . F 4 HOH A 18 518 12 HOH HOH . F 4 HOH A 19 519 265 HOH HOH . F 4 HOH A 20 520 239 HOH HOH . F 4 HOH A 21 521 51 HOH HOH . F 4 HOH A 22 522 54 HOH HOH . F 4 HOH A 23 523 67 HOH HOH . F 4 HOH A 24 524 83 HOH HOH . F 4 HOH A 25 525 34 HOH HOH . F 4 HOH A 26 526 108 HOH HOH . F 4 HOH A 27 527 161 HOH HOH . F 4 HOH A 28 528 169 HOH HOH . F 4 HOH A 29 529 39 HOH HOH . F 4 HOH A 30 530 37 HOH HOH . F 4 HOH A 31 531 236 HOH HOH . F 4 HOH A 32 532 258 HOH HOH . F 4 HOH A 33 533 82 HOH HOH . F 4 HOH A 34 534 116 HOH HOH . F 4 HOH A 35 535 41 HOH HOH . F 4 HOH A 36 536 140 HOH HOH . F 4 HOH A 37 537 132 HOH HOH . F 4 HOH A 38 538 92 HOH HOH . F 4 HOH A 39 539 28 HOH HOH . F 4 HOH A 40 540 86 HOH HOH . F 4 HOH A 41 541 62 HOH HOH . F 4 HOH A 42 542 13 HOH HOH . F 4 HOH A 43 543 144 HOH HOH . F 4 HOH A 44 544 271 HOH HOH . F 4 HOH A 45 545 249 HOH HOH . F 4 HOH A 46 546 246 HOH HOH . F 4 HOH A 47 547 24 HOH HOH . F 4 HOH A 48 548 80 HOH HOH . F 4 HOH A 49 549 27 HOH HOH . F 4 HOH A 50 550 156 HOH HOH . F 4 HOH A 51 551 221 HOH HOH . F 4 HOH A 52 552 61 HOH HOH . F 4 HOH A 53 553 1 HOH HOH . F 4 HOH A 54 554 125 HOH HOH . F 4 HOH A 55 555 23 HOH HOH . F 4 HOH A 56 556 107 HOH HOH . F 4 HOH A 57 557 17 HOH HOH . F 4 HOH A 58 558 21 HOH HOH . F 4 HOH A 59 559 250 HOH HOH . F 4 HOH A 60 560 149 HOH HOH . F 4 HOH A 61 561 56 HOH HOH . F 4 HOH A 62 562 234 HOH HOH . F 4 HOH A 63 563 193 HOH HOH . F 4 HOH A 64 564 38 HOH HOH . F 4 HOH A 65 565 9 HOH HOH . F 4 HOH A 66 566 135 HOH HOH . F 4 HOH A 67 567 58 HOH HOH . F 4 HOH A 68 568 96 HOH HOH . F 4 HOH A 69 569 247 HOH HOH . F 4 HOH A 70 570 10 HOH HOH . F 4 HOH A 71 571 64 HOH HOH . F 4 HOH A 72 572 163 HOH HOH . F 4 HOH A 73 573 69 HOH HOH . F 4 HOH A 74 574 208 HOH HOH . F 4 HOH A 75 575 3 HOH HOH . F 4 HOH A 76 576 211 HOH HOH . F 4 HOH A 77 577 16 HOH HOH . F 4 HOH A 78 578 20 HOH HOH . F 4 HOH A 79 579 15 HOH HOH . F 4 HOH A 80 580 6 HOH HOH . F 4 HOH A 81 581 84 HOH HOH . F 4 HOH A 82 582 73 HOH HOH . F 4 HOH A 83 583 175 HOH HOH . F 4 HOH A 84 584 31 HOH HOH . F 4 HOH A 85 585 137 HOH HOH . F 4 HOH A 86 586 207 HOH HOH . F 4 HOH A 87 587 129 HOH HOH . F 4 HOH A 88 588 252 HOH HOH . F 4 HOH A 89 589 153 HOH HOH . F 4 HOH A 90 590 179 HOH HOH . F 4 HOH A 91 591 120 HOH HOH . F 4 HOH A 92 592 105 HOH HOH . F 4 HOH A 93 593 55 HOH HOH . F 4 HOH A 94 594 174 HOH HOH . F 4 HOH A 95 595 260 HOH HOH . F 4 HOH A 96 596 26 HOH HOH . F 4 HOH A 97 597 52 HOH HOH . F 4 HOH A 98 598 88 HOH HOH . F 4 HOH A 99 599 68 HOH HOH . F 4 HOH A 100 600 255 HOH HOH . F 4 HOH A 101 601 50 HOH HOH . F 4 HOH A 102 602 183 HOH HOH . F 4 HOH A 103 603 106 HOH HOH . F 4 HOH A 104 604 65 HOH HOH . F 4 HOH A 105 605 87 HOH HOH . F 4 HOH A 106 606 245 HOH HOH . F 4 HOH A 107 607 49 HOH HOH . F 4 HOH A 108 608 268 HOH HOH . F 4 HOH A 109 609 276 HOH HOH . F 4 HOH A 110 610 57 HOH HOH . F 4 HOH A 111 611 101 HOH HOH . F 4 HOH A 112 612 19 HOH HOH . F 4 HOH A 113 613 40 HOH HOH . F 4 HOH A 114 614 217 HOH HOH . F 4 HOH A 115 615 188 HOH HOH . F 4 HOH A 116 616 48 HOH HOH . F 4 HOH A 117 617 11 HOH HOH . F 4 HOH A 118 618 104 HOH HOH . F 4 HOH A 119 619 272 HOH HOH . F 4 HOH A 120 620 45 HOH HOH . F 4 HOH A 121 621 4 HOH HOH . F 4 HOH A 122 622 126 HOH HOH . F 4 HOH A 123 623 171 HOH HOH . F 4 HOH A 124 624 225 HOH HOH . F 4 HOH A 125 625 142 HOH HOH . F 4 HOH A 126 626 60 HOH HOH . F 4 HOH A 127 627 44 HOH HOH . F 4 HOH A 128 628 238 HOH HOH . F 4 HOH A 129 629 7 HOH HOH . F 4 HOH A 130 630 166 HOH HOH . F 4 HOH A 131 631 98 HOH HOH . F 4 HOH A 132 632 259 HOH HOH . F 4 HOH A 133 633 227 HOH HOH . F 4 HOH A 134 634 191 HOH HOH . F 4 HOH A 135 635 242 HOH HOH . F 4 HOH A 136 636 274 HOH HOH . F 4 HOH A 137 637 226 HOH HOH . F 4 HOH A 138 638 94 HOH HOH . F 4 HOH A 139 639 115 HOH HOH . F 4 HOH A 140 640 2 HOH HOH . F 4 HOH A 141 641 95 HOH HOH . F 4 HOH A 142 642 59 HOH HOH . F 4 HOH A 143 643 22 HOH HOH . F 4 HOH A 144 644 218 HOH HOH . F 4 HOH A 145 645 269 HOH HOH . F 4 HOH A 146 646 77 HOH HOH . F 4 HOH A 147 647 32 HOH HOH . F 4 HOH A 148 648 160 HOH HOH . F 4 HOH A 149 649 159 HOH HOH . F 4 HOH A 150 650 266 HOH HOH . F 4 HOH A 151 651 158 HOH HOH . F 4 HOH A 152 652 5 HOH HOH . F 4 HOH A 153 653 143 HOH HOH . F 4 HOH A 154 654 29 HOH HOH . F 4 HOH A 155 655 235 HOH HOH . F 4 HOH A 156 656 150 HOH HOH . F 4 HOH A 157 657 230 HOH HOH . F 4 HOH A 158 658 127 HOH HOH . F 4 HOH A 159 659 123 HOH HOH . F 4 HOH A 160 660 182 HOH HOH . F 4 HOH A 161 661 70 HOH HOH . F 4 HOH A 162 662 270 HOH HOH . F 4 HOH A 163 663 164 HOH HOH . F 4 HOH A 164 664 251 HOH HOH . F 4 HOH A 165 665 264 HOH HOH . F 4 HOH A 166 666 186 HOH HOH . F 4 HOH A 167 667 30 HOH HOH . F 4 HOH A 168 668 240 HOH HOH . F 4 HOH A 169 669 25 HOH HOH . F 4 HOH A 170 670 113 HOH HOH . F 4 HOH A 171 671 118 HOH HOH . F 4 HOH A 172 672 53 HOH HOH . F 4 HOH A 173 673 192 HOH HOH . F 4 HOH A 174 674 223 HOH HOH . F 4 HOH A 175 675 76 HOH HOH . F 4 HOH A 176 676 184 HOH HOH . F 4 HOH A 177 677 275 HOH HOH . F 4 HOH A 178 678 47 HOH HOH . F 4 HOH A 179 679 89 HOH HOH . F 4 HOH A 180 680 139 HOH HOH . F 4 HOH A 181 681 72 HOH HOH . F 4 HOH A 182 682 220 HOH HOH . F 4 HOH A 183 683 103 HOH HOH . F 4 HOH A 184 684 178 HOH HOH . F 4 HOH A 185 685 112 HOH HOH . F 4 HOH A 186 686 109 HOH HOH . F 4 HOH A 187 687 130 HOH HOH . F 4 HOH A 188 688 262 HOH HOH . F 4 HOH A 189 689 196 HOH HOH . F 4 HOH A 190 690 167 HOH HOH . F 4 HOH A 191 691 36 HOH HOH . F 4 HOH A 192 692 224 HOH HOH . F 4 HOH A 193 693 205 HOH HOH . F 4 HOH A 194 694 267 HOH HOH . F 4 HOH A 195 695 210 HOH HOH . F 4 HOH A 196 696 134 HOH HOH . F 4 HOH A 197 697 93 HOH HOH . F 4 HOH A 198 698 187 HOH HOH . F 4 HOH A 199 699 273 HOH HOH . F 4 HOH A 200 700 180 HOH HOH . F 4 HOH A 201 701 198 HOH HOH . F 4 HOH A 202 702 173 HOH HOH . F 4 HOH A 203 703 133 HOH HOH . F 4 HOH A 204 704 189 HOH HOH . F 4 HOH A 205 705 172 HOH HOH . F 4 HOH A 206 706 90 HOH HOH . F 4 HOH A 207 707 154 HOH HOH . F 4 HOH A 208 708 244 HOH HOH . F 4 HOH A 209 709 228 HOH HOH . F 4 HOH A 210 710 254 HOH HOH . F 4 HOH A 211 711 100 HOH HOH . F 4 HOH A 212 712 215 HOH HOH . F 4 HOH A 213 713 222 HOH HOH . F 4 HOH A 214 714 202 HOH HOH . F 4 HOH A 215 715 8 HOH HOH . F 4 HOH A 216 716 177 HOH HOH . F 4 HOH A 217 717 203 HOH HOH . F 4 HOH A 218 718 190 HOH HOH . F 4 HOH A 219 719 206 HOH HOH . F 4 HOH A 220 720 85 HOH HOH . F 4 HOH A 221 721 261 HOH HOH . F 4 HOH A 222 722 114 HOH HOH . F 4 HOH A 223 723 201 HOH HOH . F 4 HOH A 224 724 241 HOH HOH . F 4 HOH A 225 725 263 HOH HOH . F 4 HOH A 226 726 151 HOH HOH . F 4 HOH A 227 727 257 HOH HOH . F 4 HOH A 228 728 170 HOH HOH . F 4 HOH A 229 729 74 HOH HOH . F 4 HOH A 230 730 42 HOH HOH . F 4 HOH A 231 731 155 HOH HOH . F 4 HOH A 232 732 78 HOH HOH . F 4 HOH A 233 733 147 HOH HOH . F 4 HOH A 234 734 157 HOH HOH . F 4 HOH A 235 735 197 HOH HOH . F 4 HOH A 236 736 138 HOH HOH . F 4 HOH A 237 737 110 HOH HOH . F 4 HOH A 238 738 176 HOH HOH . F 4 HOH A 239 739 79 HOH HOH . F 4 HOH A 240 740 124 HOH HOH . F 4 HOH A 241 741 136 HOH HOH . F 4 HOH A 242 742 253 HOH HOH . F 4 HOH A 243 743 102 HOH HOH . F 4 HOH A 244 744 209 HOH HOH . F 4 HOH A 245 745 97 HOH HOH . F 4 HOH A 246 746 71 HOH HOH . F 4 HOH A 247 747 216 HOH HOH . F 4 HOH A 248 748 131 HOH HOH . F 4 HOH A 249 749 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AUH . . . E 3 -136.031 -181.315 307.127 1 50.4 ? C1 AUH 404 A 1 HETATM 2 C C2 AUH . . . E 3 -135.518 -182.646 307.632 1 47.03 ? C2 AUH 404 A 1 HETATM 3 C C3 AUH . . . E 3 -134.572 -183.336 306.873 1 45.2 ? C3 AUH 404 A 1 HETATM 4 C C4 AUH . . . E 3 -134.099 -184.571 307.284 1 43.92 ? C4 AUH 404 A 1 HETATM 5 C C5 AUH . . . E 3 -134.566 -185.137 308.451 1 42.49 ? C5 AUH 404 A 1 HETATM 6 C C6 AUH . . . E 3 -135.503 -184.469 309.221 1 43.32 ? C6 AUH 404 A 1 HETATM 7 C C7 AUH . . . E 3 -135.983 -183.214 308.832 1 46.19 ? C7 AUH 404 A 1 HETATM 8 C C8 AUH . . . E 3 -136.917 -182.509 309.763 1 49.51 ? C8 AUH 404 A 1 HETATM 9 C C9 AUH . . . E 3 -138.256 -182.321 309.407 1 50.64 ? C9 AUH 404 A 1 HETATM 10 C C10 AUH . . . E 3 -139.123 -181.632 310.239 1 52.31 ? C10 AUH 404 A 1 HETATM 11 C C11 AUH . . . E 3 -138.69 -181.108 311.448 1 52.86 ? C11 AUH 404 A 1 HETATM 12 C C22 AUH . . . E 3 -137.363 -181.301 311.818 1 51.81 ? C22 AUH 404 A 1 HETATM 13 C C23 AUH . . . E 3 -136.49 -182.004 310.998 1 50.44 ? C23 AUH 404 A 1 HETATM 14 C C24 AUH . . . E 3 -134.733 -181.906 312.627 1 50.67 ? C24 AUH 404 A 1 HETATM 15 O O AUH . . . E 3 -135.196 -182.297 311.336 1 49.65 ? O AUH 404 A 1 HETATM 16 C C AUH . . . E 3 -135.273 -180.133 307.646 1 52 ? C AUH 404 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #