data_5OTY # _model_server_result.job_id kfgMVHbBEF4o6OOa-yKA8Q _model_server_result.datetime_utc '2024-11-04 23:05:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5OTY # _exptl.entry_id 5OTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 424.366 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1~{H}-benzimidazol-2-yl)-~{N}-[[3,5-bis(chloranyl)-4-(2-ethylphenyl)phenyl]methyl]ethanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.21 _cell.angle_gamma 90 _cell.entry_id 5OTY _cell.length_a 58.11 _cell.length_b 46.22 _cell.length_c 63.6 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H23 Cl2 N3' _chem_comp.formula_weight 424.366 _chem_comp.id AUW _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1~{H}-benzimidazol-2-yl)-~{N}-[[3,5-bis(chloranyl)-4-(2-ethylphenyl)phenyl]methyl]ethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 AUW doub 76 n y C17 C16 AUW sing 77 n y C C1 AUW sing 78 n n C18 C19 AUW sing 79 n y N1 C16 AUW sing 80 n y N1 C15 AUW doub 81 n y C16 C21 AUW doub 82 n y C19 C20 AUW doub 83 n y C15 C14 AUW sing 84 n n C15 N2 AUW sing 85 n y C14 C13 AUW sing 86 n n C21 C20 AUW sing 87 n y C21 N2 AUW sing 88 n y C1 C2 AUW sing 89 n n C13 N AUW sing 90 n n N C12 AUW sing 91 n n C2 C3 AUW doub 92 n y C2 C7 AUW sing 93 n y C12 C11 AUW sing 94 n n C10 C11 AUW doub 95 n y C10 C9 AUW sing 96 n y CL C9 AUW sing 97 n n C11 C22 AUW sing 98 n y C9 C8 AUW doub 99 n y C3 C4 AUW sing 100 n y C22 C23 AUW doub 101 n y C8 C23 AUW sing 102 n y C8 C7 AUW sing 103 n n C23 CL1 AUW sing 104 n n C7 C6 AUW doub 105 n y C4 C5 AUW doub 106 n y C6 C5 AUW sing 107 n y C1 H1 AUW sing 108 n n C1 H2 AUW sing 109 n n C6 H3 AUW sing 110 n n C5 H4 AUW sing 111 n n C4 H5 AUW sing 112 n n C3 H6 AUW sing 113 n n C H7 AUW sing 114 n n C H8 AUW sing 115 n n C H9 AUW sing 116 n n C22 H10 AUW sing 117 n n C10 H11 AUW sing 118 n n C12 H12 AUW sing 119 n n C12 H13 AUW sing 120 n n N H14 AUW sing 121 n n C13 H16 AUW sing 122 n n C13 H17 AUW sing 123 n n C14 H18 AUW sing 124 n n C14 H19 AUW sing 125 n n N2 H20 AUW sing 126 n n C20 H22 AUW sing 127 n n C19 H23 AUW sing 128 n n C18 H24 AUW sing 129 n n C17 H25 AUW sing 130 n n # _atom_sites.entry_id 5OTY _atom_sites.fract_transf_matrix[1][1] 0.017209 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007026 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 401 1 ACT ACT . C 2 ACT A 1 402 2 ACT ACT . D 2 ACT A 1 403 3 ACT ACT . E 3 TFA A 1 404 1 TFA XXX . F 4 AUW A 1 405 1 AUW 168 . G 5 HOH A 1 501 125 HOH HOH . G 5 HOH A 2 502 192 HOH HOH . G 5 HOH A 3 503 59 HOH HOH . G 5 HOH A 4 504 45 HOH HOH . G 5 HOH A 5 505 9 HOH HOH . G 5 HOH A 6 506 140 HOH HOH . G 5 HOH A 7 507 175 HOH HOH . G 5 HOH A 8 508 116 HOH HOH . G 5 HOH A 9 509 199 HOH HOH . G 5 HOH A 10 510 196 HOH HOH . G 5 HOH A 11 511 91 HOH HOH . G 5 HOH A 12 512 161 HOH HOH . G 5 HOH A 13 513 48 HOH HOH . G 5 HOH A 14 514 33 HOH HOH . G 5 HOH A 15 515 128 HOH HOH . G 5 HOH A 16 516 198 HOH HOH . G 5 HOH A 17 517 30 HOH HOH . G 5 HOH A 18 518 145 HOH HOH . G 5 HOH A 19 519 134 HOH HOH . G 5 HOH A 20 520 78 HOH HOH . G 5 HOH A 21 521 15 HOH HOH . G 5 HOH A 22 522 26 HOH HOH . G 5 HOH A 23 523 58 HOH HOH . G 5 HOH A 24 524 88 HOH HOH . G 5 HOH A 25 525 122 HOH HOH . G 5 HOH A 26 526 97 HOH HOH . G 5 HOH A 27 527 201 HOH HOH . G 5 HOH A 28 528 81 HOH HOH . G 5 HOH A 29 529 5 HOH HOH . G 5 HOH A 30 530 67 HOH HOH . G 5 HOH A 31 531 53 HOH HOH . G 5 HOH A 32 532 142 HOH HOH . G 5 HOH A 33 533 90 HOH HOH . G 5 HOH A 34 534 86 HOH HOH . G 5 HOH A 35 535 187 HOH HOH . G 5 HOH A 36 536 121 HOH HOH . G 5 HOH A 37 537 210 HOH HOH . G 5 HOH A 38 538 194 HOH HOH . G 5 HOH A 39 539 40 HOH HOH . G 5 HOH A 40 540 133 HOH HOH . G 5 HOH A 41 541 31 HOH HOH . G 5 HOH A 42 542 8 HOH HOH . G 5 HOH A 43 543 27 HOH HOH . G 5 HOH A 44 544 77 HOH HOH . G 5 HOH A 45 545 106 HOH HOH . G 5 HOH A 46 546 205 HOH HOH . G 5 HOH A 47 547 130 HOH HOH . G 5 HOH A 48 548 22 HOH HOH . G 5 HOH A 49 549 143 HOH HOH . G 5 HOH A 50 550 44 HOH HOH . G 5 HOH A 51 551 138 HOH HOH . G 5 HOH A 52 552 14 HOH HOH . G 5 HOH A 53 553 162 HOH HOH . G 5 HOH A 54 554 105 HOH HOH . G 5 HOH A 55 555 160 HOH HOH . G 5 HOH A 56 556 124 HOH HOH . G 5 HOH A 57 557 178 HOH HOH . G 5 HOH A 58 558 212 HOH HOH . G 5 HOH A 59 559 114 HOH HOH . G 5 HOH A 60 560 50 HOH HOH . G 5 HOH A 61 561 123 HOH HOH . G 5 HOH A 62 562 135 HOH HOH . G 5 HOH A 63 563 215 HOH HOH . G 5 HOH A 64 564 71 HOH HOH . G 5 HOH A 65 565 185 HOH HOH . G 5 HOH A 66 566 107 HOH HOH . G 5 HOH A 67 567 80 HOH HOH . G 5 HOH A 68 568 181 HOH HOH . G 5 HOH A 69 569 6 HOH HOH . G 5 HOH A 70 570 98 HOH HOH . G 5 HOH A 71 571 24 HOH HOH . G 5 HOH A 72 572 64 HOH HOH . G 5 HOH A 73 573 120 HOH HOH . G 5 HOH A 74 574 157 HOH HOH . G 5 HOH A 75 575 18 HOH HOH . G 5 HOH A 76 576 200 HOH HOH . G 5 HOH A 77 577 118 HOH HOH . G 5 HOH A 78 578 69 HOH HOH . G 5 HOH A 79 579 38 HOH HOH . G 5 HOH A 80 580 108 HOH HOH . G 5 HOH A 81 581 170 HOH HOH . G 5 HOH A 82 582 19 HOH HOH . G 5 HOH A 83 583 55 HOH HOH . G 5 HOH A 84 584 7 HOH HOH . G 5 HOH A 85 585 16 HOH HOH . G 5 HOH A 86 586 74 HOH HOH . G 5 HOH A 87 587 28 HOH HOH . G 5 HOH A 88 588 104 HOH HOH . G 5 HOH A 89 589 191 HOH HOH . G 5 HOH A 90 590 68 HOH HOH . G 5 HOH A 91 591 174 HOH HOH . G 5 HOH A 92 592 149 HOH HOH . G 5 HOH A 93 593 39 HOH HOH . G 5 HOH A 94 594 131 HOH HOH . G 5 HOH A 95 595 85 HOH HOH . G 5 HOH A 96 596 137 HOH HOH . G 5 HOH A 97 597 2 HOH HOH . G 5 HOH A 98 598 144 HOH HOH . G 5 HOH A 99 599 43 HOH HOH . G 5 HOH A 100 600 73 HOH HOH . G 5 HOH A 101 601 208 HOH HOH . G 5 HOH A 102 602 176 HOH HOH . G 5 HOH A 103 603 47 HOH HOH . G 5 HOH A 104 604 4 HOH HOH . G 5 HOH A 105 605 17 HOH HOH . G 5 HOH A 106 606 129 HOH HOH . G 5 HOH A 107 607 207 HOH HOH . G 5 HOH A 108 608 190 HOH HOH . G 5 HOH A 109 609 82 HOH HOH . G 5 HOH A 110 610 57 HOH HOH . G 5 HOH A 111 611 87 HOH HOH . G 5 HOH A 112 612 41 HOH HOH . G 5 HOH A 113 613 100 HOH HOH . G 5 HOH A 114 614 42 HOH HOH . G 5 HOH A 115 615 151 HOH HOH . G 5 HOH A 116 616 211 HOH HOH . G 5 HOH A 117 617 32 HOH HOH . G 5 HOH A 118 618 183 HOH HOH . G 5 HOH A 119 619 54 HOH HOH . G 5 HOH A 120 620 96 HOH HOH . G 5 HOH A 121 621 11 HOH HOH . G 5 HOH A 122 622 61 HOH HOH . G 5 HOH A 123 623 195 HOH HOH . G 5 HOH A 124 624 213 HOH HOH . G 5 HOH A 125 625 3 HOH HOH . G 5 HOH A 126 626 84 HOH HOH . G 5 HOH A 127 627 70 HOH HOH . G 5 HOH A 128 628 79 HOH HOH . G 5 HOH A 129 629 146 HOH HOH . G 5 HOH A 130 630 165 HOH HOH . G 5 HOH A 131 631 95 HOH HOH . G 5 HOH A 132 632 136 HOH HOH . G 5 HOH A 133 633 113 HOH HOH . G 5 HOH A 134 634 49 HOH HOH . G 5 HOH A 135 635 12 HOH HOH . G 5 HOH A 136 636 115 HOH HOH . G 5 HOH A 137 637 25 HOH HOH . G 5 HOH A 138 638 46 HOH HOH . G 5 HOH A 139 639 197 HOH HOH . G 5 HOH A 140 640 204 HOH HOH . G 5 HOH A 141 641 169 HOH HOH . G 5 HOH A 142 642 20 HOH HOH . G 5 HOH A 143 643 153 HOH HOH . G 5 HOH A 144 644 168 HOH HOH . G 5 HOH A 145 645 34 HOH HOH . G 5 HOH A 146 646 193 HOH HOH . G 5 HOH A 147 647 29 HOH HOH . G 5 HOH A 148 648 89 HOH HOH . G 5 HOH A 149 649 164 HOH HOH . G 5 HOH A 150 650 112 HOH HOH . G 5 HOH A 151 651 216 HOH HOH . G 5 HOH A 152 652 180 HOH HOH . G 5 HOH A 153 653 141 HOH HOH . G 5 HOH A 154 654 126 HOH HOH . G 5 HOH A 155 655 209 HOH HOH . G 5 HOH A 156 656 184 HOH HOH . G 5 HOH A 157 657 51 HOH HOH . G 5 HOH A 158 658 127 HOH HOH . G 5 HOH A 159 659 189 HOH HOH . G 5 HOH A 160 660 214 HOH HOH . G 5 HOH A 161 661 93 HOH HOH . G 5 HOH A 162 662 158 HOH HOH . G 5 HOH A 163 663 10 HOH HOH . G 5 HOH A 164 664 109 HOH HOH . G 5 HOH A 165 665 177 HOH HOH . G 5 HOH A 166 666 83 HOH HOH . G 5 HOH A 167 667 102 HOH HOH . G 5 HOH A 168 668 35 HOH HOH . G 5 HOH A 169 669 172 HOH HOH . G 5 HOH A 170 670 13 HOH HOH . G 5 HOH A 171 671 154 HOH HOH . G 5 HOH A 172 672 182 HOH HOH . G 5 HOH A 173 673 152 HOH HOH . G 5 HOH A 174 674 179 HOH HOH . G 5 HOH A 175 675 92 HOH HOH . G 5 HOH A 176 676 173 HOH HOH . G 5 HOH A 177 677 139 HOH HOH . G 5 HOH A 178 678 148 HOH HOH . G 5 HOH A 179 679 202 HOH HOH . G 5 HOH A 180 680 167 HOH HOH . G 5 HOH A 181 681 188 HOH HOH . G 5 HOH A 182 682 163 HOH HOH . G 5 HOH A 183 683 72 HOH HOH . G 5 HOH A 184 684 150 HOH HOH . G 5 HOH A 185 685 159 HOH HOH . G 5 HOH A 186 686 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 AUW . . . F 4 -109.694 -176.719 310.897 1 23.01 ? C2 AUW 405 A 1 HETATM 2 C C1 AUW . . . F 4 -110.135 -176.907 309.46 1 24.06 ? C1 AUW 405 A 1 HETATM 3 CL CL1 AUW . . . F 4 -112.512 -178.574 311.999 1 31.14 ? CL1 AUW 405 A 1 HETATM 4 C C23 AUW . . . F 4 -113.005 -176.956 311.666 1 26.82 ? C23 AUW 405 A 1 HETATM 5 C C8 AUW . . . F 4 -112.033 -175.961 311.567 1 28.1 ? C8 AUW 405 A 1 HETATM 6 C C7 AUW . . . F 4 -110.59 -176.235 311.868 1 25.89 ? C7 AUW 405 A 1 HETATM 7 C C6 AUW . . . F 4 -110.15 -176.095 313.191 1 26.12 ? C6 AUW 405 A 1 HETATM 8 C C5 AUW . . . F 4 -108.847 -176.424 313.542 1 25.82 ? C5 AUW 405 A 1 HETATM 9 C C4 AUW . . . F 4 -107.97 -176.892 312.583 1 25.83 ? C4 AUW 405 A 1 HETATM 10 C C3 AUW . . . F 4 -108.392 -177.052 311.274 1 23.88 ? C3 AUW 405 A 1 HETATM 11 C C AUW . . . F 4 -109.654 -175.881 308.481 1 27.6 ? C AUW 405 A 1 HETATM 12 C C22 AUW . . . F 4 -114.345 -176.715 311.441 1 25.49 ? C22 AUW 405 A 1 HETATM 13 C C11 AUW . . . F 4 -114.778 -175.444 311.083 1 25.26 ? C11 AUW 405 A 1 HETATM 14 C C10 AUW . . . F 4 -113.825 -174.441 310.933 1 28.18 ? C10 AUW 405 A 1 HETATM 15 C C9 AUW . . . F 4 -112.488 -174.701 311.173 1 31.7 ? C9 AUW 405 A 1 HETATM 16 CL CL AUW . . . F 4 -111.347 -173.407 310.987 1 46 ? CL AUW 405 A 1 HETATM 17 C C12 AUW . . . F 4 -116.249 -175.149 310.911 1 26.12 ? C12 AUW 405 A 1 HETATM 18 N N AUW . . . F 4 -116.95 -176.088 310.026 1 26.11 ? N AUW 405 A 1 HETATM 19 C C13 AUW . . . F 4 -118.395 -175.829 309.955 1 27.47 ? C13 AUW 405 A 1 HETATM 20 C C14 AUW . . . F 4 -119.031 -176.999 309.238 1 29.01 ? C14 AUW 405 A 1 HETATM 21 C C15 AUW . . . F 4 -120.523 -176.966 309.21 1 29.69 ? C15 AUW 405 A 1 HETATM 22 N N2 AUW . . . F 4 -121.273 -175.956 309.615 1 33.15 ? N2 AUW 405 A 1 HETATM 23 C C21 AUW . . . F 4 -122.585 -176.357 309.361 1 35.28 ? C21 AUW 405 A 1 HETATM 24 C C16 AUW . . . F 4 -122.58 -177.635 308.803 1 34.02 ? C16 AUW 405 A 1 HETATM 25 N N1 AUW . . . F 4 -121.249 -177.998 308.722 1 30.12 ? N1 AUW 405 A 1 HETATM 26 C C20 AUW . . . F 4 -123.797 -175.693 309.552 1 37.83 ? C20 AUW 405 A 1 HETATM 27 C C19 AUW . . . F 4 -124.976 -176.316 309.155 1 39.15 ? C19 AUW 405 A 1 HETATM 28 C C18 AUW . . . F 4 -124.954 -177.594 308.584 1 37.89 ? C18 AUW 405 A 1 HETATM 29 C C17 AUW . . . F 4 -123.754 -178.274 308.415 1 36.25 ? C17 AUW 405 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #