data_5OU8
#
_model_server_result.job_id            rF4Qcfzv50naCXaBw57VyQ 
_model_server_result.datetime_utc      '2024-12-21 16:17:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ou8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":202}' 
#
_entry.id    5OU8 
#
_exptl.entry_id    5OU8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OU8 
_cell.length_a            59.97 
_cell.length_b            59.97 
_cell.length_c            313.212 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OU8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 28 1_555 A SG CYS 70 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf2 A SG CYS 112 A CYS 110 1_555 A SG CYS 152 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf3 B SG CYS 30 B CYS 28 1_555 B SG CYS 70 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 B SG CYS 112 B CYS 110 1_555 B SG CYS 152 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
covale ? covale1 A ND2 ASN 74 A ASN 72 1_555 G C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 B ND2 ASN 74 B ASN 72 1_555 J C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
covale ? covale3 C C PRO 2 C PRO 2 1_555 C N HYP 3 C HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale4 C C HYP 3 C HYP 3 1_555 C N GLY 4 C GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale5 C C PRO 5 C PRO 5 1_555 C N HYP 6 C HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale6 C C HYP 6 C HYP 6 1_555 C N GLY 7 C GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 C C PRO 8 C PRO 8 1_555 C N HYP 9 C HYP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 C C HYP 9 C HYP 9 1_555 C N GLY 10 C GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale9 C C PRO 11 C PRO 11 1_555 C N HYP 12 C HYP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale10 C C HYP 12 C HYP 12 1_555 C N GLY 13 C GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale11 C C PRO 14 C PRO 14 1_555 C N HYP 15 C HYP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale12 D C PRO 2 D PRO 2 1_555 D N HYP 3 D HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale13 D C HYP 3 D HYP 3 1_555 D N GLY 4 D GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale14 D C PRO 5 D PRO 5 1_555 D N HYP 6 D HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale15 D C HYP 6 D HYP 6 1_555 D N GLY 7 D GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale16 D C PRO 8 D PRO 8 1_555 D N HYP 9 D HYP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale17 D C HYP 9 D HYP 9 1_555 D N GLY 10 D GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale18 D C PRO 11 D PRO 11 1_555 D N HYP 12 D HYP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale19 D C HYP 12 D HYP 12 1_555 D N GLY 13 D GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale20 D C PRO 14 D PRO 14 1_555 D N HYP 15 D HYP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale21 E C PRO 2 E PRO 2 1_555 E N HYP 3 E HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale22 E C HYP 3 E HYP 3 1_555 E N GLY 4 E GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale23 E C PRO 5 E PRO 5 1_555 E N HYP 6 E HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale24 E C HYP 6 E HYP 6 1_555 E N GLY 7 E GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale25 E C PRO 8 E PRO 8 1_555 E N HYP 9 E HYP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale26 E C HYP 9 E HYP 9 1_555 E N GLY 10 E GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale27 E C PRO 11 E PRO 11 1_555 E N HYP 12 E HYP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale28 E C HYP 12 E HYP 12 1_555 E N GLY 13 E GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale29 E C PRO 14 E PRO 14 1_555 E N HYP 15 E HYP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 255 n n 
C1 O1 NAG sing 256 n n 
C1 O5 NAG sing 257 n n 
C1 H1 NAG sing 258 n n 
C2 C3 NAG sing 259 n n 
C2 N2 NAG sing 260 n n 
C2 H2 NAG sing 261 n n 
C3 C4 NAG sing 262 n n 
C3 O3 NAG sing 263 n n 
C3 H3 NAG sing 264 n n 
C4 C5 NAG sing 265 n n 
C4 O4 NAG sing 266 n n 
C4 H4 NAG sing 267 n n 
C5 C6 NAG sing 268 n n 
C5 O5 NAG sing 269 n n 
C5 H5 NAG sing 270 n n 
C6 O6 NAG sing 271 n n 
C6 H61 NAG sing 272 n n 
C6 H62 NAG sing 273 n n 
C7 C8 NAG sing 274 n n 
C7 N2 NAG sing 275 n n 
C7 O7 NAG doub 276 n n 
C8 H81 NAG sing 277 n n 
C8 H82 NAG sing 278 n n 
C8 H83 NAG sing 279 n n 
N2 HN2 NAG sing 280 n n 
O1 HO1 NAG sing 281 n n 
O3 HO3 NAG sing 282 n n 
O4 HO4 NAG sing 283 n n 
O6 HO6 NAG sing 284 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5OU8 
_atom_sites.fract_transf_matrix[1][1]    0.016675 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016675 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003193 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 CL A 1 201 201 CL CL . 
G 4 NAG A 1 202 572 NAG NAG . 
H 5 PG4 A 1 203 601 PG4 PG4 . 
I 3 CL B 1 201 203 CL CL . 
J 4 NAG B 1 202 572 NAG NAG . 
K 5 PG4 B 1 203 601 PG4 PG4 . 
L 6 HOH A 1 301 82 HOH HOH . 
L 6 HOH A 2 302 71 HOH HOH . 
L 6 HOH A 3 303 46 HOH HOH . 
L 6 HOH A 4 304 10 HOH HOH . 
L 6 HOH A 5 305 75 HOH HOH . 
L 6 HOH A 6 306 80 HOH HOH . 
L 6 HOH A 7 307 4 HOH HOH . 
L 6 HOH A 8 308 68 HOH HOH . 
L 6 HOH A 9 309 21 HOH HOH . 
L 6 HOH A 10 310 38 HOH HOH . 
L 6 HOH A 11 311 45 HOH HOH . 
L 6 HOH A 12 312 12 HOH HOH . 
L 6 HOH A 13 313 49 HOH HOH . 
L 6 HOH A 14 314 85 HOH HOH . 
L 6 HOH A 15 315 76 HOH HOH . 
L 6 HOH A 16 316 5 HOH HOH . 
L 6 HOH A 17 317 44 HOH HOH . 
L 6 HOH A 18 318 41 HOH HOH . 
L 6 HOH A 19 319 19 HOH HOH . 
L 6 HOH A 20 320 40 HOH HOH . 
L 6 HOH A 21 321 58 HOH HOH . 
L 6 HOH A 22 322 42 HOH HOH . 
L 6 HOH A 23 323 9 HOH HOH . 
L 6 HOH A 24 324 81 HOH HOH . 
L 6 HOH A 25 325 72 HOH HOH . 
L 6 HOH A 26 326 1 HOH HOH . 
L 6 HOH A 27 327 24 HOH HOH . 
L 6 HOH A 28 328 11 HOH HOH . 
L 6 HOH A 29 329 3 HOH HOH . 
L 6 HOH A 30 330 23 HOH HOH . 
L 6 HOH A 31 331 20 HOH HOH . 
L 6 HOH A 32 332 57 HOH HOH . 
L 6 HOH A 33 333 22 HOH HOH . 
L 6 HOH A 34 334 6 HOH HOH . 
L 6 HOH A 35 335 7 HOH HOH . 
L 6 HOH A 36 336 8 HOH HOH . 
L 6 HOH A 37 337 18 HOH HOH . 
L 6 HOH A 38 338 2 HOH HOH . 
L 6 HOH A 39 339 74 HOH HOH . 
L 6 HOH A 40 340 35 HOH HOH . 
L 6 HOH A 41 341 39 HOH HOH . 
M 6 HOH B 1 301 64 HOH HOH . 
M 6 HOH B 2 302 66 HOH HOH . 
M 6 HOH B 3 303 47 HOH HOH . 
M 6 HOH B 4 304 62 HOH HOH . 
M 6 HOH B 5 305 86 HOH HOH . 
M 6 HOH B 6 306 56 HOH HOH . 
M 6 HOH B 7 307 78 HOH HOH . 
M 6 HOH B 8 308 50 HOH HOH . 
M 6 HOH B 9 309 63 HOH HOH . 
M 6 HOH B 10 310 55 HOH HOH . 
M 6 HOH B 11 311 48 HOH HOH . 
M 6 HOH B 12 312 83 HOH HOH . 
M 6 HOH B 13 313 60 HOH HOH . 
M 6 HOH B 14 314 31 HOH HOH . 
M 6 HOH B 15 315 51 HOH HOH . 
M 6 HOH B 16 316 14 HOH HOH . 
M 6 HOH B 17 317 27 HOH HOH . 
M 6 HOH B 18 318 70 HOH HOH . 
M 6 HOH B 19 319 34 HOH HOH . 
M 6 HOH B 20 320 69 HOH HOH . 
M 6 HOH B 21 321 13 HOH HOH . 
M 6 HOH B 22 322 79 HOH HOH . 
M 6 HOH B 23 323 59 HOH HOH . 
M 6 HOH B 24 324 54 HOH HOH . 
M 6 HOH B 25 325 32 HOH HOH . 
M 6 HOH B 26 326 30 HOH HOH . 
M 6 HOH B 27 327 26 HOH HOH . 
M 6 HOH B 28 328 65 HOH HOH . 
M 6 HOH B 29 329 29 HOH HOH . 
M 6 HOH B 30 330 52 HOH HOH . 
M 6 HOH B 31 331 33 HOH HOH . 
M 6 HOH B 32 332 87 HOH HOH . 
M 6 HOH B 33 333 15 HOH HOH . 
M 6 HOH B 34 334 43 HOH HOH . 
M 6 HOH B 35 335 67 HOH HOH . 
M 6 HOH B 36 336 61 HOH HOH . 
M 6 HOH B 37 337 16 HOH HOH . 
M 6 HOH B 38 338 53 HOH HOH . 
M 6 HOH B 39 339 88 HOH HOH . 
M 6 HOH B 40 340 17 HOH HOH . 
M 6 HOH B 41 341 28 HOH HOH . 
M 6 HOH B 42 342 25 HOH HOH . 
N 6 HOH C 1 101 36 HOH HOH . 
N 6 HOH C 2 102 84 HOH HOH . 
N 6 HOH C 3 103 77 HOH HOH . 
O 6 HOH E 1 101 37 HOH HOH . 
O 6 HOH E 2 102 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 4 -41.277 -2.74 6.931 1 96.52 ? C1 NAG 202 B 1 
HETATM 2 C C2 NAG . . . J 4 -41.945 -2.011 8.097 1 100.2 ? C2 NAG 202 B 1 
HETATM 3 C C3 NAG . . . J 4 -43.307 -2.573 8.448 1 105.76 ? C3 NAG 202 B 1 
HETATM 4 C C4 NAG . . . J 4 -44.133 -2.483 7.187 1 106.58 ? C4 NAG 202 B 1 
HETATM 5 C C5 NAG . . . J 4 -43.494 -3.403 6.155 1 103.35 ? C5 NAG 202 B 1 
HETATM 6 C C6 NAG . . . J 4 -44.356 -3.422 4.898 1 106.31 ? C6 NAG 202 B 1 
HETATM 7 C C7 NAG . . . J 4 -40.51 -0.912 9.701 1 98.4 ? C7 NAG 202 B 1 
HETATM 8 C C8 NAG . . . J 4 -39.742 -1.017 10.977 1 95.29 ? C8 NAG 202 B 1 
HETATM 9 N N2 NAG . . . J 4 -41.158 -2.003 9.306 1 98.99 ? N2 NAG 202 B 1 
HETATM 10 O O3 NAG . . . J 4 -43.882 -1.828 9.501 1 110.63 ? O3 NAG 202 B 1 
HETATM 11 O O4 NAG . . . J 4 -45.447 -2.869 7.477 1 111.32 ? O4 NAG 202 B 1 
HETATM 12 O O5 NAG . . . J 4 -42.18 -2.956 5.849 1 98.03 ? O5 NAG 202 B 1 
HETATM 13 O O6 NAG . . . J 4 -43.685 -4.135 3.89 1 105.65 ? O6 NAG 202 B 1 
HETATM 14 O O7 NAG . . . J 4 -40.495 0.146 9.068 1 98.75 ? O7 NAG 202 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#