data_5OU8 # _model_server_result.job_id '_gkt9RYIFZZbFqSXDhI0IA' _model_server_result.datetime_utc '2024-12-21 16:03:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ou8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":203}' # _entry.id 5OU8 # _exptl.entry_id 5OU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OU8 _cell.length_a 59.97 _cell.length_b 59.97 _cell.length_c 313.212 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 28 1_555 A SG CYS 70 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 112 A CYS 110 1_555 A SG CYS 152 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 B SG CYS 30 B CYS 28 1_555 B SG CYS 70 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 112 B CYS 110 1_555 B SG CYS 152 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? covale ? covale1 A ND2 ASN 74 A ASN 72 1_555 G C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 B ND2 ASN 74 B ASN 72 1_555 J C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale3 C C PRO 2 C PRO 2 1_555 C N HYP 3 C HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale4 C C HYP 3 C HYP 3 1_555 C N GLY 4 C GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 C C PRO 5 C PRO 5 1_555 C N HYP 6 C HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale6 C C HYP 6 C HYP 6 1_555 C N GLY 7 C GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 C C PRO 8 C PRO 8 1_555 C N HYP 9 C HYP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 C C HYP 9 C HYP 9 1_555 C N GLY 10 C GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 C C PRO 11 C PRO 11 1_555 C N HYP 12 C HYP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale10 C C HYP 12 C HYP 12 1_555 C N GLY 13 C GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 C C PRO 14 C PRO 14 1_555 C N HYP 15 C HYP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 D C PRO 2 D PRO 2 1_555 D N HYP 3 D HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale13 D C HYP 3 D HYP 3 1_555 D N GLY 4 D GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 D C PRO 5 D PRO 5 1_555 D N HYP 6 D HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale15 D C HYP 6 D HYP 6 1_555 D N GLY 7 D GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 D C PRO 8 D PRO 8 1_555 D N HYP 9 D HYP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale17 D C HYP 9 D HYP 9 1_555 D N GLY 10 D GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 D C PRO 11 D PRO 11 1_555 D N HYP 12 D HYP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale19 D C HYP 12 D HYP 12 1_555 D N GLY 13 D GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale20 D C PRO 14 D PRO 14 1_555 D N HYP 15 D HYP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale21 E C PRO 2 E PRO 2 1_555 E N HYP 3 E HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale22 E C HYP 3 E HYP 3 1_555 E N GLY 4 E GLY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale23 E C PRO 5 E PRO 5 1_555 E N HYP 6 E HYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale24 E C HYP 6 E HYP 6 1_555 E N GLY 7 E GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale25 E C PRO 8 E PRO 8 1_555 E N HYP 9 E HYP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale26 E C HYP 9 E HYP 9 1_555 E N GLY 10 E GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale27 E C PRO 11 E PRO 11 1_555 E N HYP 12 E HYP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale28 E C HYP 12 E HYP 12 1_555 E N GLY 13 E GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale29 E C PRO 14 E PRO 14 1_555 E N HYP 15 E HYP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 285 n n O1 HO1 PG4 sing 286 n n C1 C2 PG4 sing 287 n n C1 H11 PG4 sing 288 n n C1 H12 PG4 sing 289 n n C2 O2 PG4 sing 290 n n C2 H21 PG4 sing 291 n n C2 H22 PG4 sing 292 n n O2 C3 PG4 sing 293 n n C3 C4 PG4 sing 294 n n C3 H31 PG4 sing 295 n n C3 H32 PG4 sing 296 n n C4 O3 PG4 sing 297 n n C4 H41 PG4 sing 298 n n C4 H42 PG4 sing 299 n n O3 C5 PG4 sing 300 n n C5 C6 PG4 sing 301 n n C5 H51 PG4 sing 302 n n C5 H52 PG4 sing 303 n n C6 O4 PG4 sing 304 n n C6 H61 PG4 sing 305 n n C6 H62 PG4 sing 306 n n O4 C7 PG4 sing 307 n n C7 C8 PG4 sing 308 n n C7 H71 PG4 sing 309 n n C7 H72 PG4 sing 310 n n C8 O5 PG4 sing 311 n n C8 H81 PG4 sing 312 n n C8 H82 PG4 sing 313 n n O5 HO5 PG4 sing 314 n n # _atom_sites.entry_id 5OU8 _atom_sites.fract_transf_matrix[1][1] 0.016675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 CL A 1 201 201 CL CL . G 4 NAG A 1 202 572 NAG NAG . H 5 PG4 A 1 203 601 PG4 PG4 . I 3 CL B 1 201 203 CL CL . J 4 NAG B 1 202 572 NAG NAG . K 5 PG4 B 1 203 601 PG4 PG4 . L 6 HOH A 1 301 82 HOH HOH . L 6 HOH A 2 302 71 HOH HOH . L 6 HOH A 3 303 46 HOH HOH . L 6 HOH A 4 304 10 HOH HOH . L 6 HOH A 5 305 75 HOH HOH . L 6 HOH A 6 306 80 HOH HOH . L 6 HOH A 7 307 4 HOH HOH . L 6 HOH A 8 308 68 HOH HOH . L 6 HOH A 9 309 21 HOH HOH . L 6 HOH A 10 310 38 HOH HOH . L 6 HOH A 11 311 45 HOH HOH . L 6 HOH A 12 312 12 HOH HOH . L 6 HOH A 13 313 49 HOH HOH . L 6 HOH A 14 314 85 HOH HOH . L 6 HOH A 15 315 76 HOH HOH . L 6 HOH A 16 316 5 HOH HOH . L 6 HOH A 17 317 44 HOH HOH . L 6 HOH A 18 318 41 HOH HOH . L 6 HOH A 19 319 19 HOH HOH . L 6 HOH A 20 320 40 HOH HOH . L 6 HOH A 21 321 58 HOH HOH . L 6 HOH A 22 322 42 HOH HOH . L 6 HOH A 23 323 9 HOH HOH . L 6 HOH A 24 324 81 HOH HOH . L 6 HOH A 25 325 72 HOH HOH . L 6 HOH A 26 326 1 HOH HOH . L 6 HOH A 27 327 24 HOH HOH . L 6 HOH A 28 328 11 HOH HOH . L 6 HOH A 29 329 3 HOH HOH . L 6 HOH A 30 330 23 HOH HOH . L 6 HOH A 31 331 20 HOH HOH . L 6 HOH A 32 332 57 HOH HOH . L 6 HOH A 33 333 22 HOH HOH . L 6 HOH A 34 334 6 HOH HOH . L 6 HOH A 35 335 7 HOH HOH . L 6 HOH A 36 336 8 HOH HOH . L 6 HOH A 37 337 18 HOH HOH . L 6 HOH A 38 338 2 HOH HOH . L 6 HOH A 39 339 74 HOH HOH . L 6 HOH A 40 340 35 HOH HOH . L 6 HOH A 41 341 39 HOH HOH . M 6 HOH B 1 301 64 HOH HOH . M 6 HOH B 2 302 66 HOH HOH . M 6 HOH B 3 303 47 HOH HOH . M 6 HOH B 4 304 62 HOH HOH . M 6 HOH B 5 305 86 HOH HOH . M 6 HOH B 6 306 56 HOH HOH . M 6 HOH B 7 307 78 HOH HOH . M 6 HOH B 8 308 50 HOH HOH . M 6 HOH B 9 309 63 HOH HOH . M 6 HOH B 10 310 55 HOH HOH . M 6 HOH B 11 311 48 HOH HOH . M 6 HOH B 12 312 83 HOH HOH . M 6 HOH B 13 313 60 HOH HOH . M 6 HOH B 14 314 31 HOH HOH . M 6 HOH B 15 315 51 HOH HOH . M 6 HOH B 16 316 14 HOH HOH . M 6 HOH B 17 317 27 HOH HOH . M 6 HOH B 18 318 70 HOH HOH . M 6 HOH B 19 319 34 HOH HOH . M 6 HOH B 20 320 69 HOH HOH . M 6 HOH B 21 321 13 HOH HOH . M 6 HOH B 22 322 79 HOH HOH . M 6 HOH B 23 323 59 HOH HOH . M 6 HOH B 24 324 54 HOH HOH . M 6 HOH B 25 325 32 HOH HOH . M 6 HOH B 26 326 30 HOH HOH . M 6 HOH B 27 327 26 HOH HOH . M 6 HOH B 28 328 65 HOH HOH . M 6 HOH B 29 329 29 HOH HOH . M 6 HOH B 30 330 52 HOH HOH . M 6 HOH B 31 331 33 HOH HOH . M 6 HOH B 32 332 87 HOH HOH . M 6 HOH B 33 333 15 HOH HOH . M 6 HOH B 34 334 43 HOH HOH . M 6 HOH B 35 335 67 HOH HOH . M 6 HOH B 36 336 61 HOH HOH . M 6 HOH B 37 337 16 HOH HOH . M 6 HOH B 38 338 53 HOH HOH . M 6 HOH B 39 339 88 HOH HOH . M 6 HOH B 40 340 17 HOH HOH . M 6 HOH B 41 341 28 HOH HOH . M 6 HOH B 42 342 25 HOH HOH . N 6 HOH C 1 101 36 HOH HOH . N 6 HOH C 2 102 84 HOH HOH . N 6 HOH C 3 103 77 HOH HOH . O 6 HOH E 1 101 37 HOH HOH . O 6 HOH E 2 102 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . K 5 -15.052 10.674 23.738 1 67.38 ? O1 PG4 203 B 1 HETATM 2 C C1 PG4 . . . K 5 -13.969 9.736 23.635 1 63.85 ? C1 PG4 203 B 1 HETATM 3 C C2 PG4 . . . K 5 -13.899 9.111 22.255 1 62.46 ? C2 PG4 203 B 1 HETATM 4 O O2 PG4 . . . K 5 -12.719 9.56 21.578 1 64 ? O2 PG4 203 B 1 HETATM 5 C C3 PG4 . . . K 5 -12.618 9.101 20.211 1 60.64 ? C3 PG4 203 B 1 HETATM 6 C C4 PG4 . . . K 5 -13.195 10.122 19.231 1 61.71 ? C4 PG4 203 B 1 HETATM 7 O O3 PG4 . . . K 5 -12.405 10.164 18.032 1 65.44 ? O3 PG4 203 B 1 HETATM 8 C C5 PG4 . . . K 5 -11.573 11.314 17.875 1 64.37 ? C5 PG4 203 B 1 HETATM 9 C C6 PG4 . . . K 5 -10.473 11.013 16.865 1 64.97 ? C6 PG4 203 B 1 HETATM 10 O O4 PG4 . . . K 5 -10.63 11.836 15.704 1 67.97 ? O4 PG4 203 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #