data_5OUA # _model_server_result.job_id qCs7nq_Sr1Q9XmwoeFiJhA _model_server_result.datetime_utc '2024-10-13 02:23:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oua # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5OUA # _exptl.entry_id 5OUA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-ribopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OUA _cell.length_a 58.647 _cell.length_b 71.748 _cell.length_c 110.154 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OUA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 12 A GLY 9 1_555 A N SEP 13 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C SEP 13 A SEP 10 1_555 A N GLU 14 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.34 ? covale ? covale5 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale11 B OG SER 9 B SER 18 1_555 C C1 RIP . B RIP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id RIP _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-ribopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version RIP DRibpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 RIP b-D-ribopyranose 'COMMON NAME' GMML 1 RIP b-D-Ribp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 RIP Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5OUA _atom_sites.fract_transf_matrix[1][1] 0.017051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 RIP B 1 101 1 RIP RIB . D 4 HOH A 1 401 59 HOH HOH . D 4 HOH A 2 402 241 HOH HOH . D 4 HOH A 3 403 131 HOH HOH . D 4 HOH A 4 404 29 HOH HOH . D 4 HOH A 5 405 189 HOH HOH . D 4 HOH A 6 406 72 HOH HOH . D 4 HOH A 7 407 223 HOH HOH . D 4 HOH A 8 408 185 HOH HOH . D 4 HOH A 9 409 239 HOH HOH . D 4 HOH A 10 410 134 HOH HOH . D 4 HOH A 11 411 163 HOH HOH . D 4 HOH A 12 412 159 HOH HOH . D 4 HOH A 13 413 179 HOH HOH . D 4 HOH A 14 414 46 HOH HOH . D 4 HOH A 15 415 240 HOH HOH . D 4 HOH A 16 416 88 HOH HOH . D 4 HOH A 17 417 11 HOH HOH . D 4 HOH A 18 418 138 HOH HOH . D 4 HOH A 19 419 245 HOH HOH . D 4 HOH A 20 420 70 HOH HOH . D 4 HOH A 21 421 31 HOH HOH . D 4 HOH A 22 422 209 HOH HOH . D 4 HOH A 23 423 50 HOH HOH . D 4 HOH A 24 424 206 HOH HOH . D 4 HOH A 25 425 196 HOH HOH . D 4 HOH A 26 426 60 HOH HOH . D 4 HOH A 27 427 33 HOH HOH . D 4 HOH A 28 428 20 HOH HOH . D 4 HOH A 29 429 175 HOH HOH . D 4 HOH A 30 430 8 HOH HOH . D 4 HOH A 31 431 63 HOH HOH . D 4 HOH A 32 432 55 HOH HOH . D 4 HOH A 33 433 100 HOH HOH . D 4 HOH A 34 434 4 HOH HOH . D 4 HOH A 35 435 67 HOH HOH . D 4 HOH A 36 436 120 HOH HOH . D 4 HOH A 37 437 84 HOH HOH . D 4 HOH A 38 438 89 HOH HOH . D 4 HOH A 39 439 113 HOH HOH . D 4 HOH A 40 440 49 HOH HOH . D 4 HOH A 41 441 213 HOH HOH . D 4 HOH A 42 442 217 HOH HOH . D 4 HOH A 43 443 215 HOH HOH . D 4 HOH A 44 444 43 HOH HOH . D 4 HOH A 45 445 243 HOH HOH . D 4 HOH A 46 446 158 HOH HOH . D 4 HOH A 47 447 174 HOH HOH . D 4 HOH A 48 448 201 HOH HOH . D 4 HOH A 49 449 192 HOH HOH . D 4 HOH A 50 450 220 HOH HOH . D 4 HOH A 51 451 51 HOH HOH . D 4 HOH A 52 452 66 HOH HOH . D 4 HOH A 53 453 38 HOH HOH . D 4 HOH A 54 454 94 HOH HOH . D 4 HOH A 55 455 230 HOH HOH . D 4 HOH A 56 456 96 HOH HOH . D 4 HOH A 57 457 57 HOH HOH . D 4 HOH A 58 458 104 HOH HOH . D 4 HOH A 59 459 10 HOH HOH . D 4 HOH A 60 460 205 HOH HOH . D 4 HOH A 61 461 211 HOH HOH . D 4 HOH A 62 462 108 HOH HOH . D 4 HOH A 63 463 187 HOH HOH . D 4 HOH A 64 464 152 HOH HOH . D 4 HOH A 65 465 18 HOH HOH . D 4 HOH A 66 466 140 HOH HOH . D 4 HOH A 67 467 77 HOH HOH . D 4 HOH A 68 468 203 HOH HOH . D 4 HOH A 69 469 16 HOH HOH . D 4 HOH A 70 470 58 HOH HOH . D 4 HOH A 71 471 184 HOH HOH . D 4 HOH A 72 472 102 HOH HOH . D 4 HOH A 73 473 176 HOH HOH . D 4 HOH A 74 474 9 HOH HOH . D 4 HOH A 75 475 56 HOH HOH . D 4 HOH A 76 476 156 HOH HOH . D 4 HOH A 77 477 13 HOH HOH . D 4 HOH A 78 478 22 HOH HOH . D 4 HOH A 79 479 15 HOH HOH . D 4 HOH A 80 480 188 HOH HOH . D 4 HOH A 81 481 193 HOH HOH . D 4 HOH A 82 482 107 HOH HOH . D 4 HOH A 83 483 137 HOH HOH . D 4 HOH A 84 484 228 HOH HOH . D 4 HOH A 85 485 65 HOH HOH . D 4 HOH A 86 486 173 HOH HOH . D 4 HOH A 87 487 36 HOH HOH . D 4 HOH A 88 488 25 HOH HOH . D 4 HOH A 89 489 73 HOH HOH . D 4 HOH A 90 490 143 HOH HOH . D 4 HOH A 91 491 248 HOH HOH . D 4 HOH A 92 492 48 HOH HOH . D 4 HOH A 93 493 42 HOH HOH . D 4 HOH A 94 494 246 HOH HOH . D 4 HOH A 95 495 7 HOH HOH . D 4 HOH A 96 496 14 HOH HOH . D 4 HOH A 97 497 119 HOH HOH . D 4 HOH A 98 498 212 HOH HOH . D 4 HOH A 99 499 21 HOH HOH . D 4 HOH A 100 500 117 HOH HOH . D 4 HOH A 101 501 62 HOH HOH . D 4 HOH A 102 502 242 HOH HOH . D 4 HOH A 103 503 3 HOH HOH . D 4 HOH A 104 504 71 HOH HOH . D 4 HOH A 105 505 19 HOH HOH . D 4 HOH A 106 506 154 HOH HOH . D 4 HOH A 107 507 26 HOH HOH . D 4 HOH A 108 508 85 HOH HOH . D 4 HOH A 109 509 99 HOH HOH . D 4 HOH A 110 510 47 HOH HOH . D 4 HOH A 111 511 1 HOH HOH . D 4 HOH A 112 512 150 HOH HOH . D 4 HOH A 113 513 34 HOH HOH . D 4 HOH A 114 514 214 HOH HOH . D 4 HOH A 115 515 68 HOH HOH . D 4 HOH A 116 516 98 HOH HOH . D 4 HOH A 117 517 74 HOH HOH . D 4 HOH A 118 518 151 HOH HOH . D 4 HOH A 119 519 83 HOH HOH . D 4 HOH A 120 520 35 HOH HOH . D 4 HOH A 121 521 97 HOH HOH . D 4 HOH A 122 522 45 HOH HOH . D 4 HOH A 123 523 110 HOH HOH . D 4 HOH A 124 524 101 HOH HOH . D 4 HOH A 125 525 6 HOH HOH . D 4 HOH A 126 526 86 HOH HOH . D 4 HOH A 127 527 147 HOH HOH . D 4 HOH A 128 528 194 HOH HOH . D 4 HOH A 129 529 172 HOH HOH . D 4 HOH A 130 530 79 HOH HOH . D 4 HOH A 131 531 40 HOH HOH . D 4 HOH A 132 532 247 HOH HOH . D 4 HOH A 133 533 121 HOH HOH . D 4 HOH A 134 534 235 HOH HOH . D 4 HOH A 135 535 162 HOH HOH . D 4 HOH A 136 536 171 HOH HOH . D 4 HOH A 137 537 236 HOH HOH . D 4 HOH A 138 538 200 HOH HOH . D 4 HOH A 139 539 76 HOH HOH . D 4 HOH A 140 540 53 HOH HOH . D 4 HOH A 141 541 225 HOH HOH . D 4 HOH A 142 542 232 HOH HOH . D 4 HOH A 143 543 224 HOH HOH . D 4 HOH A 144 544 78 HOH HOH . D 4 HOH A 145 545 109 HOH HOH . D 4 HOH A 146 546 115 HOH HOH . D 4 HOH A 147 547 17 HOH HOH . D 4 HOH A 148 548 238 HOH HOH . D 4 HOH A 149 549 145 HOH HOH . D 4 HOH A 150 550 116 HOH HOH . D 4 HOH A 151 551 52 HOH HOH . D 4 HOH A 152 552 168 HOH HOH . D 4 HOH A 153 553 136 HOH HOH . D 4 HOH A 154 554 69 HOH HOH . D 4 HOH A 155 555 202 HOH HOH . D 4 HOH A 156 556 64 HOH HOH . D 4 HOH A 157 557 28 HOH HOH . D 4 HOH A 158 558 122 HOH HOH . D 4 HOH A 159 559 24 HOH HOH . D 4 HOH A 160 560 118 HOH HOH . D 4 HOH A 161 561 219 HOH HOH . D 4 HOH A 162 562 178 HOH HOH . D 4 HOH A 163 563 80 HOH HOH . D 4 HOH A 164 564 2 HOH HOH . D 4 HOH A 165 565 170 HOH HOH . D 4 HOH A 166 566 157 HOH HOH . D 4 HOH A 167 567 87 HOH HOH . D 4 HOH A 168 568 54 HOH HOH . D 4 HOH A 169 569 12 HOH HOH . D 4 HOH A 170 570 95 HOH HOH . D 4 HOH A 171 571 227 HOH HOH . D 4 HOH A 172 572 124 HOH HOH . D 4 HOH A 173 573 153 HOH HOH . D 4 HOH A 174 574 161 HOH HOH . D 4 HOH A 175 575 135 HOH HOH . D 4 HOH A 176 576 165 HOH HOH . D 4 HOH A 177 577 149 HOH HOH . D 4 HOH A 178 578 207 HOH HOH . D 4 HOH A 179 579 30 HOH HOH . D 4 HOH A 180 580 222 HOH HOH . D 4 HOH A 181 581 167 HOH HOH . D 4 HOH A 182 582 37 HOH HOH . D 4 HOH A 183 583 204 HOH HOH . D 4 HOH A 184 584 234 HOH HOH . D 4 HOH A 185 585 166 HOH HOH . D 4 HOH A 186 586 61 HOH HOH . D 4 HOH A 187 587 221 HOH HOH . D 4 HOH A 188 588 237 HOH HOH . D 4 HOH A 189 589 244 HOH HOH . D 4 HOH A 190 590 229 HOH HOH . D 4 HOH A 191 591 32 HOH HOH . D 4 HOH A 192 592 103 HOH HOH . D 4 HOH A 193 593 231 HOH HOH . D 4 HOH A 194 594 218 HOH HOH . D 4 HOH A 195 595 155 HOH HOH . D 4 HOH A 196 596 127 HOH HOH . D 4 HOH A 197 597 44 HOH HOH . D 4 HOH A 198 598 112 HOH HOH . D 4 HOH A 199 599 106 HOH HOH . D 4 HOH A 200 600 144 HOH HOH . D 4 HOH A 201 601 160 HOH HOH . D 4 HOH A 202 602 226 HOH HOH . D 4 HOH A 203 603 182 HOH HOH . D 4 HOH A 204 604 195 HOH HOH . D 4 HOH A 205 605 141 HOH HOH . E 4 HOH B 1 201 41 HOH HOH . E 4 HOH B 2 202 23 HOH HOH . E 4 HOH B 3 203 5 HOH HOH . E 4 HOH B 4 204 233 HOH HOH . E 4 HOH B 5 205 27 HOH HOH . E 4 HOH B 6 206 125 HOH HOH . E 4 HOH B 7 207 82 HOH HOH . E 4 HOH B 8 208 75 HOH HOH . E 4 HOH B 9 209 129 HOH HOH . E 4 HOH B 10 210 208 HOH HOH . E 4 HOH B 11 211 164 HOH HOH . E 4 HOH B 12 212 142 HOH HOH . E 4 HOH B 13 213 91 HOH HOH . E 4 HOH B 14 214 139 HOH HOH . E 4 HOH B 15 215 81 HOH HOH . E 4 HOH B 16 216 148 HOH HOH . E 4 HOH B 17 217 92 HOH HOH . E 4 HOH B 18 218 126 HOH HOH . E 4 HOH B 19 219 191 HOH HOH . E 4 HOH B 20 220 111 HOH HOH . E 4 HOH B 21 221 39 HOH HOH . E 4 HOH B 22 222 132 HOH HOH . E 4 HOH B 23 223 93 HOH HOH . E 4 HOH B 24 224 177 HOH HOH . E 4 HOH B 25 225 105 HOH HOH . E 4 HOH B 26 226 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RIP . . . C 3 -14.804 -25.16 -33.928 1 61.05 ? C1 RIP 101 B 1 HETATM 2 C C2 RIP . . . C 3 -15.854 -25.842 -33.055 1 60.08 ? C2 RIP 101 B 1 HETATM 3 C C3 RIP . . . C 3 -16.904 -24.836 -32.604 1 62.06 ? C3 RIP 101 B 1 HETATM 4 C C4 RIP . . . C 3 -16.278 -23.698 -31.813 1 65.82 ? C4 RIP 101 B 1 HETATM 5 C C5 RIP . . . C 3 -14.993 -23.256 -32.489 1 68.23 ? C5 RIP 101 B 1 HETATM 6 O O2 RIP . . . C 3 -16.466 -26.899 -33.789 1 54.95 ? O2 RIP 101 B 1 HETATM 7 O O5 RIP . . . C 3 -14.924 -23.739 -33.836 1 67.05 ? O5 RIP 101 B 1 HETATM 8 H H2 RIP . . . C 3 -15.379 -26.252 -32.165 1 72.09 ? H2 RIP 101 B 1 HETATM 9 H H3 RIP . . . C 3 -17.639 -25.337 -31.976 1 74.48 ? H3 RIP 101 B 1 HETATM 10 H H4 RIP . . . C 3 -16.979 -22.876 -31.679 1 78.98 ? H4 RIP 101 B 1 HETATM 11 H H51 RIP . . . C 3 -14.109 -23.695 -32.028 1 81.88 ? H51 RIP 101 B 1 HETATM 12 H H52 RIP . . . C 3 -14.864 -22.175 -32.463 1 81.88 ? H52 RIP 101 B 1 HETATM 13 H HO2 RIP . . . C 3 -16.387 -27.717 -33.233 1 65.94 ? HO2 RIP 101 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #