data_5OUC # _model_server_result.job_id y3gHIZ9JLpEmZlJ6UslGtQ _model_server_result.datetime_utc '2024-10-13 02:28:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ouc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 5OUC # _exptl.entry_id 5OUC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-ribopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OUC _cell.length_a 58.585 _cell.length_b 73.399 _cell.length_c 108.357 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OUC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 12 A GLY 9 1_555 A N SEP 13 A SEP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C SEP 13 A SEP 10 1_555 A N GLU 14 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C PHE 141 A PHE 138 1_555 A N SEP 142 A SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C SEP 142 A SEP 139 1_555 A N GLU 143 A GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C TRP 199 A TRP 196 1_555 A N TPO 200 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C TPO 200 A TPO 197 1_555 A N LEU 201 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C VAL 340 A VAL 337 1_555 A N SEP 341 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C SEP 341 A SEP 338 1_555 A N ILE 342 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 B OG SER 17 E SER 24 1_555 D C1 RIP . E RIP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id RIP _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-ribopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version RIP DRibpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 RIP b-D-ribopyranose 'COMMON NAME' GMML 1 RIP b-D-Ribp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 RIP Rib 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5OUC _atom_sites.fract_transf_matrix[1][1] 0.017069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AO8 A 1 401 1 AO8 BFF . D 4 RIP E 1 101 1 RIP RIB . E 5 CL E 1 102 1 CL CL . F 6 HOH A 1 501 65 HOH HOH . F 6 HOH A 2 502 97 HOH HOH . F 6 HOH A 3 503 270 HOH HOH . F 6 HOH A 4 504 47 HOH HOH . F 6 HOH A 5 505 230 HOH HOH . F 6 HOH A 6 506 119 HOH HOH . F 6 HOH A 7 507 251 HOH HOH . F 6 HOH A 8 508 241 HOH HOH . F 6 HOH A 9 509 142 HOH HOH . F 6 HOH A 10 510 202 HOH HOH . F 6 HOH A 11 511 43 HOH HOH . F 6 HOH A 12 512 281 HOH HOH . F 6 HOH A 13 513 33 HOH HOH . F 6 HOH A 14 514 66 HOH HOH . F 6 HOH A 15 515 38 HOH HOH . F 6 HOH A 16 516 222 HOH HOH . F 6 HOH A 17 517 186 HOH HOH . F 6 HOH A 18 518 72 HOH HOH . F 6 HOH A 19 519 175 HOH HOH . F 6 HOH A 20 520 93 HOH HOH . F 6 HOH A 21 521 124 HOH HOH . F 6 HOH A 22 522 279 HOH HOH . F 6 HOH A 23 523 133 HOH HOH . F 6 HOH A 24 524 134 HOH HOH . F 6 HOH A 25 525 71 HOH HOH . F 6 HOH A 26 526 152 HOH HOH . F 6 HOH A 27 527 194 HOH HOH . F 6 HOH A 28 528 29 HOH HOH . F 6 HOH A 29 529 40 HOH HOH . F 6 HOH A 30 530 91 HOH HOH . F 6 HOH A 31 531 166 HOH HOH . F 6 HOH A 32 532 52 HOH HOH . F 6 HOH A 33 533 44 HOH HOH . F 6 HOH A 34 534 195 HOH HOH . F 6 HOH A 35 535 64 HOH HOH . F 6 HOH A 36 536 129 HOH HOH . F 6 HOH A 37 537 20 HOH HOH . F 6 HOH A 38 538 83 HOH HOH . F 6 HOH A 39 539 59 HOH HOH . F 6 HOH A 40 540 49 HOH HOH . F 6 HOH A 41 541 223 HOH HOH . F 6 HOH A 42 542 236 HOH HOH . F 6 HOH A 43 543 162 HOH HOH . F 6 HOH A 44 544 82 HOH HOH . F 6 HOH A 45 545 143 HOH HOH . F 6 HOH A 46 546 176 HOH HOH . F 6 HOH A 47 547 103 HOH HOH . F 6 HOH A 48 548 135 HOH HOH . F 6 HOH A 49 549 117 HOH HOH . F 6 HOH A 50 550 55 HOH HOH . F 6 HOH A 51 551 109 HOH HOH . F 6 HOH A 52 552 14 HOH HOH . F 6 HOH A 53 553 170 HOH HOH . F 6 HOH A 54 554 181 HOH HOH . F 6 HOH A 55 555 42 HOH HOH . F 6 HOH A 56 556 34 HOH HOH . F 6 HOH A 57 557 227 HOH HOH . F 6 HOH A 58 558 16 HOH HOH . F 6 HOH A 59 559 5 HOH HOH . F 6 HOH A 60 560 13 HOH HOH . F 6 HOH A 61 561 125 HOH HOH . F 6 HOH A 62 562 161 HOH HOH . F 6 HOH A 63 563 30 HOH HOH . F 6 HOH A 64 564 9 HOH HOH . F 6 HOH A 65 565 41 HOH HOH . F 6 HOH A 66 566 262 HOH HOH . F 6 HOH A 67 567 70 HOH HOH . F 6 HOH A 68 568 62 HOH HOH . F 6 HOH A 69 569 4 HOH HOH . F 6 HOH A 70 570 6 HOH HOH . F 6 HOH A 71 571 101 HOH HOH . F 6 HOH A 72 572 250 HOH HOH . F 6 HOH A 73 573 54 HOH HOH . F 6 HOH A 74 574 27 HOH HOH . F 6 HOH A 75 575 160 HOH HOH . F 6 HOH A 76 576 58 HOH HOH . F 6 HOH A 77 577 31 HOH HOH . F 6 HOH A 78 578 22 HOH HOH . F 6 HOH A 79 579 172 HOH HOH . F 6 HOH A 80 580 39 HOH HOH . F 6 HOH A 81 581 258 HOH HOH . F 6 HOH A 82 582 130 HOH HOH . F 6 HOH A 83 583 126 HOH HOH . F 6 HOH A 84 584 74 HOH HOH . F 6 HOH A 85 585 26 HOH HOH . F 6 HOH A 86 586 36 HOH HOH . F 6 HOH A 87 587 50 HOH HOH . F 6 HOH A 88 588 288 HOH HOH . F 6 HOH A 89 589 18 HOH HOH . F 6 HOH A 90 590 57 HOH HOH . F 6 HOH A 91 591 11 HOH HOH . F 6 HOH A 92 592 2 HOH HOH . F 6 HOH A 93 593 32 HOH HOH . F 6 HOH A 94 594 17 HOH HOH . F 6 HOH A 95 595 116 HOH HOH . F 6 HOH A 96 596 84 HOH HOH . F 6 HOH A 97 597 122 HOH HOH . F 6 HOH A 98 598 7 HOH HOH . F 6 HOH A 99 599 68 HOH HOH . F 6 HOH A 100 600 81 HOH HOH . F 6 HOH A 101 601 165 HOH HOH . F 6 HOH A 102 602 113 HOH HOH . F 6 HOH A 103 603 111 HOH HOH . F 6 HOH A 104 604 140 HOH HOH . F 6 HOH A 105 605 80 HOH HOH . F 6 HOH A 106 606 260 HOH HOH . F 6 HOH A 107 607 89 HOH HOH . F 6 HOH A 108 608 77 HOH HOH . F 6 HOH A 109 609 69 HOH HOH . F 6 HOH A 110 610 115 HOH HOH . F 6 HOH A 111 611 78 HOH HOH . F 6 HOH A 112 612 229 HOH HOH . F 6 HOH A 113 613 185 HOH HOH . F 6 HOH A 114 614 23 HOH HOH . F 6 HOH A 115 615 12 HOH HOH . F 6 HOH A 116 616 132 HOH HOH . F 6 HOH A 117 617 53 HOH HOH . F 6 HOH A 118 618 284 HOH HOH . F 6 HOH A 119 619 102 HOH HOH . F 6 HOH A 120 620 28 HOH HOH . F 6 HOH A 121 621 86 HOH HOH . F 6 HOH A 122 622 60 HOH HOH . F 6 HOH A 123 623 144 HOH HOH . F 6 HOH A 124 624 88 HOH HOH . F 6 HOH A 125 625 112 HOH HOH . F 6 HOH A 126 626 107 HOH HOH . F 6 HOH A 127 627 231 HOH HOH . F 6 HOH A 128 628 8 HOH HOH . F 6 HOH A 129 629 114 HOH HOH . F 6 HOH A 130 630 121 HOH HOH . F 6 HOH A 131 631 276 HOH HOH . F 6 HOH A 132 632 257 HOH HOH . F 6 HOH A 133 633 283 HOH HOH . F 6 HOH A 134 634 61 HOH HOH . F 6 HOH A 135 635 35 HOH HOH . F 6 HOH A 136 636 108 HOH HOH . F 6 HOH A 137 637 48 HOH HOH . F 6 HOH A 138 638 225 HOH HOH . F 6 HOH A 139 639 79 HOH HOH . F 6 HOH A 140 640 242 HOH HOH . F 6 HOH A 141 641 75 HOH HOH . F 6 HOH A 142 642 154 HOH HOH . F 6 HOH A 143 643 99 HOH HOH . F 6 HOH A 144 644 139 HOH HOH . F 6 HOH A 145 645 56 HOH HOH . F 6 HOH A 146 646 21 HOH HOH . F 6 HOH A 147 647 67 HOH HOH . F 6 HOH A 148 648 190 HOH HOH . F 6 HOH A 149 649 90 HOH HOH . F 6 HOH A 150 650 282 HOH HOH . F 6 HOH A 151 651 94 HOH HOH . F 6 HOH A 152 652 63 HOH HOH . F 6 HOH A 153 653 85 HOH HOH . F 6 HOH A 154 654 146 HOH HOH . F 6 HOH A 155 655 118 HOH HOH . F 6 HOH A 156 656 95 HOH HOH . F 6 HOH A 157 657 224 HOH HOH . F 6 HOH A 158 658 189 HOH HOH . F 6 HOH A 159 659 174 HOH HOH . F 6 HOH A 160 660 269 HOH HOH . F 6 HOH A 161 661 280 HOH HOH . F 6 HOH A 162 662 278 HOH HOH . F 6 HOH A 163 663 238 HOH HOH . F 6 HOH A 164 664 173 HOH HOH . F 6 HOH A 165 665 182 HOH HOH . F 6 HOH A 166 666 212 HOH HOH . F 6 HOH A 167 667 24 HOH HOH . F 6 HOH A 168 668 261 HOH HOH . F 6 HOH A 169 669 226 HOH HOH . F 6 HOH A 170 670 76 HOH HOH . F 6 HOH A 171 671 73 HOH HOH . F 6 HOH A 172 672 149 HOH HOH . F 6 HOH A 173 673 51 HOH HOH . F 6 HOH A 174 674 274 HOH HOH . F 6 HOH A 175 675 285 HOH HOH . F 6 HOH A 176 676 232 HOH HOH . F 6 HOH A 177 677 156 HOH HOH . F 6 HOH A 178 678 268 HOH HOH . F 6 HOH A 179 679 219 HOH HOH . F 6 HOH A 180 680 255 HOH HOH . F 6 HOH A 181 681 263 HOH HOH . F 6 HOH A 182 682 157 HOH HOH . F 6 HOH A 183 683 272 HOH HOH . F 6 HOH A 184 684 45 HOH HOH . F 6 HOH A 185 685 244 HOH HOH . F 6 HOH A 186 686 277 HOH HOH . F 6 HOH A 187 687 163 HOH HOH . F 6 HOH A 188 688 245 HOH HOH . F 6 HOH A 189 689 265 HOH HOH . F 6 HOH A 190 690 290 HOH HOH . F 6 HOH A 191 691 187 HOH HOH . F 6 HOH A 192 692 177 HOH HOH . F 6 HOH A 193 693 240 HOH HOH . F 6 HOH A 194 694 141 HOH HOH . F 6 HOH A 195 695 148 HOH HOH . F 6 HOH A 196 696 168 HOH HOH . F 6 HOH A 197 697 259 HOH HOH . F 6 HOH A 198 698 167 HOH HOH . F 6 HOH A 199 699 147 HOH HOH . F 6 HOH A 200 700 246 HOH HOH . F 6 HOH A 201 701 286 HOH HOH . F 6 HOH A 202 702 197 HOH HOH . F 6 HOH A 203 703 92 HOH HOH . F 6 HOH A 204 704 120 HOH HOH . F 6 HOH A 205 705 209 HOH HOH . F 6 HOH A 206 706 237 HOH HOH . F 6 HOH A 207 707 205 HOH HOH . F 6 HOH A 208 708 208 HOH HOH . F 6 HOH A 209 709 211 HOH HOH . F 6 HOH A 210 710 233 HOH HOH . F 6 HOH A 211 711 123 HOH HOH . F 6 HOH A 212 712 234 HOH HOH . F 6 HOH A 213 713 289 HOH HOH . F 6 HOH A 214 714 138 HOH HOH . F 6 HOH A 215 715 131 HOH HOH . F 6 HOH A 216 716 110 HOH HOH . F 6 HOH A 217 717 264 HOH HOH . F 6 HOH A 218 718 287 HOH HOH . F 6 HOH A 219 719 216 HOH HOH . F 6 HOH A 220 720 252 HOH HOH . F 6 HOH A 221 721 254 HOH HOH . G 6 HOH E 1 201 247 HOH HOH . G 6 HOH E 2 202 266 HOH HOH . G 6 HOH E 3 203 275 HOH HOH . G 6 HOH E 4 204 256 HOH HOH . G 6 HOH E 5 205 37 HOH HOH . G 6 HOH E 6 206 253 HOH HOH . G 6 HOH E 7 207 19 HOH HOH . G 6 HOH E 8 208 267 HOH HOH . G 6 HOH E 9 209 105 HOH HOH . G 6 HOH E 10 210 235 HOH HOH . G 6 HOH E 11 211 228 HOH HOH . G 6 HOH E 12 212 206 HOH HOH . G 6 HOH E 13 213 248 HOH HOH . G 6 HOH E 14 214 249 HOH HOH . G 6 HOH E 15 215 127 HOH HOH . G 6 HOH E 16 216 210 HOH HOH . G 6 HOH E 17 217 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RIP . . . D 4 -5.043 -16.805 32.948 1 48.06 ? C1 RIP 101 E 1 HETATM 2 C C2 RIP . . . D 4 -5.775 -17.401 34.145 1 52.94 ? C2 RIP 101 E 1 HETATM 3 C C3 RIP . . . D 4 -5.222 -16.831 35.443 1 55.37 ? C3 RIP 101 E 1 HETATM 4 C C4 RIP . . . D 4 -5.263 -15.312 35.418 1 55.85 ? C4 RIP 101 E 1 HETATM 5 C C5 RIP . . . D 4 -4.537 -14.816 34.182 1 54.23 ? C5 RIP 101 E 1 HETATM 6 O O2 RIP . . . D 4 -7.164 -17.107 34.04 1 55.05 ? O2 RIP 101 E 1 HETATM 7 O O5 RIP . . . D 4 -5.103 -15.38 32.991 1 51.22 ? O5 RIP 101 E 1 HETATM 8 H H2 RIP . . . D 4 -5.635 -18.481 34.163 1 63.52 ? H2 RIP 101 E 1 HETATM 9 H H3 RIP . . . D 4 -4.188 -17.152 35.567 1 66.45 ? H3 RIP 101 E 1 HETATM 10 H H4 RIP . . . D 4 -6.286 -14.942 35.475 1 67.02 ? H4 RIP 101 E 1 HETATM 11 H H51 RIP . . . D 4 -3.503 -15.153 34.143 1 65.08 ? H51 RIP 101 E 1 HETATM 12 H H52 RIP . . . D 4 -4.523 -13.728 34.121 1 65.08 ? H52 RIP 101 E 1 HETATM 13 H HO2 RIP . . . D 4 -7.618 -17.953 33.783 1 66.06 ? HO2 RIP 101 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #