data_5OUI # _model_server_result.job_id QHhsfLHt0b6krwXzgW-q0Q _model_server_result.datetime_utc '2024-11-06 00:35:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oui # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":303}' # _entry.id 5OUI # _exptl.entry_id 5OUI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 26 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OUI _cell.length_a 87.753 _cell.length_b 113.139 _cell.length_c 145.887 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OUI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 Z N N ? 6 AA N N ? 6 CA N N ? 6 DA N N ? 6 EA N N ? 6 FA N N ? 6 GA N N ? 6 HA N N ? 6 IA N N ? 6 JA N N ? 6 KA N N ? 6 LA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n F NAG 1 F 1 NAG A 205 NAG 2 n F NAG 2 F 2 NAG A 206 NAG 2 n F BMA 3 F 3 BMA A 207 BMA 2 n F MAN 4 F 4 MAN A 209 MAN 2 n F MAN 5 F 5 MAN A 208 MAN 3 n G NAG 1 G 1 NAG B 205 NAG 3 n G NAG 2 G 2 NAG B 210 NAG 4 n H NAG 1 H 1 NAG C 205 NAG 4 n H NAG 2 H 2 NAG C 211 NAG 4 n H BMA 3 H 3 BMA C 212 BMA 3 n I NAG 1 I 1 NAG D 205 NAG 3 n I NAG 2 I 2 NAG D 213 NAG 4 n J NAG 1 J 1 NAG E 205 NAG 4 n J NAG 2 J 2 NAG E 214 NAG 4 n J BMA 3 J 3 BMA E 215 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 126 A CYS 125 1_555 A SG CYS 139 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf2 A SG CYS 187 A CYS 186 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 B SG CYS 126 B CYS 125 1_555 B SG CYS 139 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 B SG CYS 187 B CYS 186 1_555 B SG CYS 188 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 C SG CYS 126 C CYS 125 1_555 C SG CYS 139 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 C SG CYS 187 C CYS 186 1_555 C SG CYS 188 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 D SG CYS 126 D CYS 125 1_555 D SG CYS 139 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf8 D SG CYS 187 D CYS 186 1_555 D SG CYS 188 D CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf9 E SG CYS 126 E CYS 125 1_555 E SG CYS 139 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf10 E SG CYS 187 E CYS 186 1_555 E SG CYS 188 E CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? covale ? covale1 A ND2 ASN 109 A ASN 108 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 B ND2 ASN 109 B ASN 108 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale3 C ND2 ASN 109 C ASN 108 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 D ND2 ASN 109 D ASN 108 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 E ND2 ASN 109 E ASN 108 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale6 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale8 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 F O6 BMA . F BMA 3 1_555 F C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale10 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale11 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale12 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale13 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale14 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale15 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 138 n n C1 C2 EDO sing 139 n n C1 H11 EDO sing 140 n n C1 H12 EDO sing 141 n n O1 HO1 EDO sing 142 n n C2 O2 EDO sing 143 n n C2 H21 EDO sing 144 n n C2 H22 EDO sing 145 n n O2 HO2 EDO sing 146 n n # _atom_sites.entry_id 5OUI _atom_sites.fract_transf_matrix[1][1] 0.011396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 5 AVB A 1 306 1 AVB CIM . L 6 EDO A 1 307 4 EDO EDO . M 6 EDO A 1 308 10 EDO EDO . N 6 EDO A 1 309 14 EDO EDO . O 6 EDO A 1 310 15 EDO EDO . P 6 EDO A 1 311 17 EDO EDO . Q 6 EDO A 1 312 18 EDO EDO . R 6 EDO A 1 313 19 EDO EDO . S 6 EDO A 1 314 22 EDO EDO . T 6 EDO A 1 315 23 EDO EDO . U 6 EDO B 1 303 8 EDO EDO . V 6 EDO B 1 304 12 EDO EDO . W 6 EDO B 1 305 13 EDO EDO . X 6 EDO B 1 306 16 EDO EDO . Y 6 EDO B 1 307 21 EDO EDO . Z 6 EDO C 1 304 9 EDO EDO . AA 6 EDO C 1 305 25 EDO EDO . BA 7 PEG C 1 306 1 PEG PEG . CA 6 EDO D 1 303 2 EDO EDO . DA 6 EDO D 1 304 6 EDO EDO . EA 6 EDO D 1 305 11 EDO EDO . FA 6 EDO D 1 306 20 EDO EDO . GA 6 EDO D 1 307 24 EDO EDO . HA 6 EDO E 1 304 1 EDO EDO . IA 6 EDO E 1 305 3 EDO EDO . JA 6 EDO E 1 306 5 EDO EDO . KA 6 EDO E 1 307 7 EDO EDO . LA 6 EDO E 1 308 26 EDO EDO . MA 8 HOH A 1 401 9 HOH HOH . MA 8 HOH A 2 402 79 HOH HOH . MA 8 HOH A 3 403 53 HOH HOH . MA 8 HOH A 4 404 149 HOH HOH . MA 8 HOH A 5 405 80 HOH HOH . MA 8 HOH A 6 406 95 HOH HOH . MA 8 HOH A 7 407 103 HOH HOH . MA 8 HOH A 8 408 163 HOH HOH . MA 8 HOH A 9 409 17 HOH HOH . MA 8 HOH A 10 410 159 HOH HOH . MA 8 HOH A 11 411 7 HOH HOH . MA 8 HOH A 12 412 120 HOH HOH . MA 8 HOH A 13 413 153 HOH HOH . MA 8 HOH A 14 414 49 HOH HOH . MA 8 HOH A 15 415 101 HOH HOH . MA 8 HOH A 16 416 154 HOH HOH . MA 8 HOH A 17 417 91 HOH HOH . MA 8 HOH A 18 418 25 HOH HOH . MA 8 HOH A 19 419 27 HOH HOH . MA 8 HOH A 20 420 144 HOH HOH . MA 8 HOH A 21 421 215 HOH HOH . MA 8 HOH A 22 422 43 HOH HOH . MA 8 HOH A 23 423 31 HOH HOH . MA 8 HOH A 24 424 100 HOH HOH . MA 8 HOH A 25 425 106 HOH HOH . MA 8 HOH A 26 426 77 HOH HOH . MA 8 HOH A 27 427 107 HOH HOH . MA 8 HOH A 28 428 162 HOH HOH . MA 8 HOH A 29 429 161 HOH HOH . MA 8 HOH A 30 430 145 HOH HOH . NA 8 HOH B 1 401 166 HOH HOH . NA 8 HOH B 2 402 109 HOH HOH . NA 8 HOH B 3 403 175 HOH HOH . NA 8 HOH B 4 404 112 HOH HOH . NA 8 HOH B 5 405 14 HOH HOH . NA 8 HOH B 6 406 63 HOH HOH . NA 8 HOH B 7 407 33 HOH HOH . NA 8 HOH B 8 408 102 HOH HOH . NA 8 HOH B 9 409 168 HOH HOH . NA 8 HOH B 10 410 139 HOH HOH . NA 8 HOH B 11 411 167 HOH HOH . NA 8 HOH B 12 412 47 HOH HOH . NA 8 HOH B 13 413 26 HOH HOH . NA 8 HOH B 14 414 5 HOH HOH . NA 8 HOH B 15 415 32 HOH HOH . OA 8 HOH C 1 401 185 HOH HOH . OA 8 HOH C 2 402 195 HOH HOH . OA 8 HOH C 3 403 225 HOH HOH . OA 8 HOH C 4 404 190 HOH HOH . OA 8 HOH C 5 405 51 HOH HOH . OA 8 HOH C 6 406 20 HOH HOH . OA 8 HOH C 7 407 45 HOH HOH . OA 8 HOH C 8 408 172 HOH HOH . OA 8 HOH C 9 409 184 HOH HOH . OA 8 HOH C 10 410 93 HOH HOH . OA 8 HOH C 11 411 197 HOH HOH . OA 8 HOH C 12 412 182 HOH HOH . PA 8 HOH D 1 401 132 HOH HOH . PA 8 HOH D 2 402 4 HOH HOH . PA 8 HOH D 3 403 37 HOH HOH . PA 8 HOH D 4 404 28 HOH HOH . PA 8 HOH D 5 405 206 HOH HOH . PA 8 HOH D 6 406 75 HOH HOH . PA 8 HOH D 7 407 50 HOH HOH . PA 8 HOH D 8 408 126 HOH HOH . PA 8 HOH D 9 409 90 HOH HOH . PA 8 HOH D 10 410 228 HOH HOH . PA 8 HOH D 11 411 60 HOH HOH . PA 8 HOH D 12 412 6 HOH HOH . PA 8 HOH D 13 413 129 HOH HOH . PA 8 HOH D 14 414 202 HOH HOH . PA 8 HOH D 15 415 16 HOH HOH . PA 8 HOH D 16 416 44 HOH HOH . PA 8 HOH D 17 417 201 HOH HOH . PA 8 HOH D 18 418 200 HOH HOH . QA 8 HOH E 1 401 34 HOH HOH . QA 8 HOH E 2 402 35 HOH HOH . QA 8 HOH E 3 403 10 HOH HOH . QA 8 HOH E 4 404 1 HOH HOH . QA 8 HOH E 5 405 3 HOH HOH . QA 8 HOH E 6 406 151 HOH HOH . QA 8 HOH E 7 407 220 HOH HOH . QA 8 HOH E 8 408 59 HOH HOH . QA 8 HOH E 9 409 22 HOH HOH . QA 8 HOH E 10 410 224 HOH HOH . QA 8 HOH E 11 411 30 HOH HOH . QA 8 HOH E 12 412 99 HOH HOH . QA 8 HOH E 13 413 218 HOH HOH . QA 8 HOH E 14 414 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . CA 6 11.506 8.09 -39.462 1 61.31 ? C1 EDO 303 D 1 HETATM 2 O O1 EDO . . . CA 6 10.232 8.039 -40.121 1 55.01 ? O1 EDO 303 D 1 HETATM 3 C C2 EDO . . . CA 6 12.686 8.293 -40.427 1 63.19 ? C2 EDO 303 D 1 HETATM 4 O O2 EDO . . . CA 6 12.305 8.808 -41.711 1 62.87 ? O2 EDO 303 D 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #