data_5OUP # _model_server_result.job_id NmhEgP3IYqiA22OaX1ToiQ _model_server_result.datetime_utc '2024-11-24 05:52:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5OUP # _exptl.entry_id 5OUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OUP _cell.length_a 104.86 _cell.length_b 104.86 _cell.length_c 52.01 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 A,B,C 1 3 A,B,C 1 4 A,B,C 1 5 A,B,C 1 6 A,B,C 1 7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -y,x-y,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 -17.336667 3 'crystal symmetry operation' 3_554 -x+y,-x,z-2/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 -34.673333 4 'crystal symmetry operation' 4_554 -x,-y,z-1/2 -1 0 0 0 -1 0 0 0 1 0 0 -26.005 5 'crystal symmetry operation' 5_555 y,-x+y,z+1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 8.668333 6 'crystal symmetry operation' 5_554 y,-x+y,z-5/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 -43.341667 7 'crystal symmetry operation' 6_554 x-y,x,z-1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 -8.668333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 632 1_555 A SG CYS 188 A CYS 646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 149 A ASN 607 1_555 B C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5OUP _atom_sites.fract_transf_matrix[1][1] 0.009537 _atom_sites.fract_transf_matrix[1][2] 0.005506 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 901 1 NAG NAG . C 3 HOH A 1 1001 74 HOH HOH . C 3 HOH A 2 1002 75 HOH HOH . C 3 HOH A 3 1003 65 HOH HOH . C 3 HOH A 4 1004 84 HOH HOH . C 3 HOH A 5 1005 85 HOH HOH . C 3 HOH A 6 1006 49 HOH HOH . C 3 HOH A 7 1007 80 HOH HOH . C 3 HOH A 8 1008 81 HOH HOH . C 3 HOH A 9 1009 83 HOH HOH . C 3 HOH A 10 1010 76 HOH HOH . C 3 HOH A 11 1011 25 HOH HOH . C 3 HOH A 12 1012 23 HOH HOH . C 3 HOH A 13 1013 1 HOH HOH . C 3 HOH A 14 1014 14 HOH HOH . C 3 HOH A 15 1015 79 HOH HOH . C 3 HOH A 16 1016 4 HOH HOH . C 3 HOH A 17 1017 11 HOH HOH . C 3 HOH A 18 1018 10 HOH HOH . C 3 HOH A 19 1019 41 HOH HOH . C 3 HOH A 20 1020 8 HOH HOH . C 3 HOH A 21 1021 57 HOH HOH . C 3 HOH A 22 1022 16 HOH HOH . C 3 HOH A 23 1023 92 HOH HOH . C 3 HOH A 24 1024 21 HOH HOH . C 3 HOH A 25 1025 51 HOH HOH . C 3 HOH A 26 1026 32 HOH HOH . C 3 HOH A 27 1027 9 HOH HOH . C 3 HOH A 28 1028 47 HOH HOH . C 3 HOH A 29 1029 33 HOH HOH . C 3 HOH A 30 1030 93 HOH HOH . C 3 HOH A 31 1031 97 HOH HOH . C 3 HOH A 32 1032 22 HOH HOH . C 3 HOH A 33 1033 59 HOH HOH . C 3 HOH A 34 1034 7 HOH HOH . C 3 HOH A 35 1035 15 HOH HOH . C 3 HOH A 36 1036 6 HOH HOH . C 3 HOH A 37 1037 54 HOH HOH . C 3 HOH A 38 1038 56 HOH HOH . C 3 HOH A 39 1039 3 HOH HOH . C 3 HOH A 40 1040 5 HOH HOH . C 3 HOH A 41 1041 86 HOH HOH . C 3 HOH A 42 1042 46 HOH HOH . C 3 HOH A 43 1043 17 HOH HOH . C 3 HOH A 44 1044 30 HOH HOH . C 3 HOH A 45 1045 42 HOH HOH . C 3 HOH A 46 1046 12 HOH HOH . C 3 HOH A 47 1047 34 HOH HOH . C 3 HOH A 48 1048 20 HOH HOH . C 3 HOH A 49 1049 18 HOH HOH . C 3 HOH A 50 1050 31 HOH HOH . C 3 HOH A 51 1051 50 HOH HOH . C 3 HOH A 52 1052 69 HOH HOH . C 3 HOH A 53 1053 96 HOH HOH . C 3 HOH A 54 1054 26 HOH HOH . C 3 HOH A 55 1055 35 HOH HOH . C 3 HOH A 56 1056 58 HOH HOH . C 3 HOH A 57 1057 45 HOH HOH . C 3 HOH A 58 1058 37 HOH HOH . C 3 HOH A 59 1059 48 HOH HOH . C 3 HOH A 60 1060 52 HOH HOH . C 3 HOH A 61 1061 95 HOH HOH . C 3 HOH A 62 1062 19 HOH HOH . C 3 HOH A 63 1063 90 HOH HOH . C 3 HOH A 64 1064 87 HOH HOH . C 3 HOH A 65 1065 78 HOH HOH . C 3 HOH A 66 1066 24 HOH HOH . C 3 HOH A 67 1067 13 HOH HOH . C 3 HOH A 68 1068 73 HOH HOH . C 3 HOH A 69 1069 2 HOH HOH . C 3 HOH A 70 1070 98 HOH HOH . C 3 HOH A 71 1071 55 HOH HOH . C 3 HOH A 72 1072 36 HOH HOH . C 3 HOH A 73 1073 62 HOH HOH . C 3 HOH A 74 1074 29 HOH HOH . C 3 HOH A 75 1075 67 HOH HOH . C 3 HOH A 76 1076 77 HOH HOH . C 3 HOH A 77 1077 64 HOH HOH . C 3 HOH A 78 1078 28 HOH HOH . C 3 HOH A 79 1079 53 HOH HOH . C 3 HOH A 80 1080 91 HOH HOH . C 3 HOH A 81 1081 82 HOH HOH . C 3 HOH A 82 1082 88 HOH HOH . C 3 HOH A 83 1083 94 HOH HOH . C 3 HOH A 84 1084 40 HOH HOH . C 3 HOH A 85 1085 89 HOH HOH . C 3 HOH A 86 1086 71 HOH HOH . C 3 HOH A 87 1087 66 HOH HOH . C 3 HOH A 88 1088 63 HOH HOH . C 3 HOH A 89 1089 38 HOH HOH . C 3 HOH A 90 1090 68 HOH HOH . C 3 HOH A 91 1091 60 HOH HOH . C 3 HOH A 92 1092 44 HOH HOH . C 3 HOH A 93 1093 39 HOH HOH . C 3 HOH A 94 1094 43 HOH HOH . C 3 HOH A 95 1095 61 HOH HOH . C 3 HOH A 96 1096 70 HOH HOH . C 3 HOH A 97 1097 27 HOH HOH . C 3 HOH A 98 1098 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -42.286 32.651 8.989 1 85.44 ? C1 NAG 901 A 1 HETATM 2 C C2 NAG . . . B 2 -43.594 32.959 9.737 1 88.06 ? C2 NAG 901 A 1 HETATM 3 C C3 NAG . . . B 2 -44.593 31.808 9.554 1 91.66 ? C3 NAG 901 A 1 HETATM 4 C C4 NAG . . . B 2 -44.715 31.403 8.089 1 91.16 ? C4 NAG 901 A 1 HETATM 5 C C5 NAG . . . B 2 -43.34 31.192 7.47 1 96.13 ? C5 NAG 901 A 1 HETATM 6 C C6 NAG . . . B 2 -43.386 30.909 5.988 1 96.96 ? C6 NAG 901 A 1 HETATM 7 C C7 NAG . . . B 2 -44.243 33.587 12.045 1 85.66 ? C7 NAG 901 A 1 HETATM 8 C C8 NAG . . . B 2 -43.75 33.756 13.454 1 83.54 ? C8 NAG 901 A 1 HETATM 9 N N2 NAG . . . B 2 -43.328 33.185 11.152 1 87.58 ? N2 NAG 901 A 1 HETATM 10 O O3 NAG . . . B 2 -45.873 32.215 10.022 1 92.14 ? O3 NAG 901 A 1 HETATM 11 O O4 NAG . . . B 2 -45.459 30.196 7.977 1 91.46 ? O4 NAG 901 A 1 HETATM 12 O O5 NAG . . . B 2 -42.567 32.384 7.634 1 97.16 ? O5 NAG 901 A 1 HETATM 13 O O6 NAG . . . B 2 -42.075 30.741 5.466 1 87.25 ? O6 NAG 901 A 1 HETATM 14 O O7 NAG . . . B 2 -45.41 33.809 11.735 1 81.71 ? O7 NAG 901 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #