data_5OVG
#
_model_server_result.job_id            WN8sRlCrogH0NzYpLKs7hQ 
_model_server_result.datetime_utc      '2024-10-16 08:24:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ovg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1103}' 
#
_entry.id    5OVG 
#
_exptl.entry_id    5OVG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OVG 
_cell.length_a            40.984 
_cell.length_b            85.671 
_cell.length_c            176.79 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OVG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 143 n n 
C1 C2 EDO sing 144 n n 
C1 H11 EDO sing 145 n n 
C1 H12 EDO sing 146 n n 
O1 HO1 EDO sing 147 n n 
C2 O2 EDO sing 148 n n 
C2 H21 EDO sing 149 n n 
C2 H22 EDO sing 150 n n 
O2 HO2 EDO sing 151 n n 
#
_atom_sites.entry_id                     5OVG 
_atom_sites.fract_transf_matrix[1][1]    0.0244 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011673 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AWZ A 1 1101 1101 AWZ DRG . 
C 3 EDO A 1 1102 1 EDO EDO . 
D 3 EDO A 1 1103 2 EDO EDO . 
E 4 HOH A 1 1201 16 HOH HOH . 
E 4 HOH A 2 1202 26 HOH HOH . 
E 4 HOH A 3 1203 175 HOH HOH . 
E 4 HOH A 4 1204 23 HOH HOH . 
E 4 HOH A 5 1205 47 HOH HOH . 
E 4 HOH A 6 1206 2 HOH HOH . 
E 4 HOH A 7 1207 20 HOH HOH . 
E 4 HOH A 8 1208 115 HOH HOH . 
E 4 HOH A 9 1209 164 HOH HOH . 
E 4 HOH A 10 1210 229 HOH HOH . 
E 4 HOH A 11 1211 185 HOH HOH . 
E 4 HOH A 12 1212 3 HOH HOH . 
E 4 HOH A 13 1213 22 HOH HOH . 
E 4 HOH A 14 1214 150 HOH HOH . 
E 4 HOH A 15 1215 31 HOH HOH . 
E 4 HOH A 16 1216 236 HOH HOH . 
E 4 HOH A 17 1217 190 HOH HOH . 
E 4 HOH A 18 1218 30 HOH HOH . 
E 4 HOH A 19 1219 21 HOH HOH . 
E 4 HOH A 20 1220 62 HOH HOH . 
E 4 HOH A 21 1221 103 HOH HOH . 
E 4 HOH A 22 1222 171 HOH HOH . 
E 4 HOH A 23 1223 136 HOH HOH . 
E 4 HOH A 24 1224 237 HOH HOH . 
E 4 HOH A 25 1225 7 HOH HOH . 
E 4 HOH A 26 1226 27 HOH HOH . 
E 4 HOH A 27 1227 80 HOH HOH . 
E 4 HOH A 28 1228 60 HOH HOH . 
E 4 HOH A 29 1229 156 HOH HOH . 
E 4 HOH A 30 1230 1 HOH HOH . 
E 4 HOH A 31 1231 128 HOH HOH . 
E 4 HOH A 32 1232 225 HOH HOH . 
E 4 HOH A 33 1233 19 HOH HOH . 
E 4 HOH A 34 1234 151 HOH HOH . 
E 4 HOH A 35 1235 54 HOH HOH . 
E 4 HOH A 36 1236 170 HOH HOH . 
E 4 HOH A 37 1237 102 HOH HOH . 
E 4 HOH A 38 1238 44 HOH HOH . 
E 4 HOH A 39 1239 59 HOH HOH . 
E 4 HOH A 40 1240 45 HOH HOH . 
E 4 HOH A 41 1241 71 HOH HOH . 
E 4 HOH A 42 1242 148 HOH HOH . 
E 4 HOH A 43 1243 63 HOH HOH . 
E 4 HOH A 44 1244 25 HOH HOH . 
E 4 HOH A 45 1245 147 HOH HOH . 
E 4 HOH A 46 1246 5 HOH HOH . 
E 4 HOH A 47 1247 144 HOH HOH . 
E 4 HOH A 48 1248 230 HOH HOH . 
E 4 HOH A 49 1249 53 HOH HOH . 
E 4 HOH A 50 1250 74 HOH HOH . 
E 4 HOH A 51 1251 92 HOH HOH . 
E 4 HOH A 52 1252 72 HOH HOH . 
E 4 HOH A 53 1253 29 HOH HOH . 
E 4 HOH A 54 1254 52 HOH HOH . 
E 4 HOH A 55 1255 17 HOH HOH . 
E 4 HOH A 56 1256 107 HOH HOH . 
E 4 HOH A 57 1257 37 HOH HOH . 
E 4 HOH A 58 1258 201 HOH HOH . 
E 4 HOH A 59 1259 94 HOH HOH . 
E 4 HOH A 60 1260 82 HOH HOH . 
E 4 HOH A 61 1261 38 HOH HOH . 
E 4 HOH A 62 1262 43 HOH HOH . 
E 4 HOH A 63 1263 68 HOH HOH . 
E 4 HOH A 64 1264 39 HOH HOH . 
E 4 HOH A 65 1265 28 HOH HOH . 
E 4 HOH A 66 1266 215 HOH HOH . 
E 4 HOH A 67 1267 91 HOH HOH . 
E 4 HOH A 68 1268 24 HOH HOH . 
E 4 HOH A 69 1269 86 HOH HOH . 
E 4 HOH A 70 1270 198 HOH HOH . 
E 4 HOH A 71 1271 113 HOH HOH . 
E 4 HOH A 72 1272 141 HOH HOH . 
E 4 HOH A 73 1273 55 HOH HOH . 
E 4 HOH A 74 1274 69 HOH HOH . 
E 4 HOH A 75 1275 46 HOH HOH . 
E 4 HOH A 76 1276 67 HOH HOH . 
E 4 HOH A 77 1277 202 HOH HOH . 
E 4 HOH A 78 1278 222 HOH HOH . 
E 4 HOH A 79 1279 149 HOH HOH . 
E 4 HOH A 80 1280 176 HOH HOH . 
E 4 HOH A 81 1281 4 HOH HOH . 
E 4 HOH A 82 1282 73 HOH HOH . 
E 4 HOH A 83 1283 83 HOH HOH . 
E 4 HOH A 84 1284 207 HOH HOH . 
E 4 HOH A 85 1285 78 HOH HOH . 
E 4 HOH A 86 1286 32 HOH HOH . 
E 4 HOH A 87 1287 204 HOH HOH . 
E 4 HOH A 88 1288 42 HOH HOH . 
E 4 HOH A 89 1289 61 HOH HOH . 
E 4 HOH A 90 1290 50 HOH HOH . 
E 4 HOH A 91 1291 10 HOH HOH . 
E 4 HOH A 92 1292 220 HOH HOH . 
E 4 HOH A 93 1293 34 HOH HOH . 
E 4 HOH A 94 1294 64 HOH HOH . 
E 4 HOH A 95 1295 199 HOH HOH . 
E 4 HOH A 96 1296 132 HOH HOH . 
E 4 HOH A 97 1297 124 HOH HOH . 
E 4 HOH A 98 1298 159 HOH HOH . 
E 4 HOH A 99 1299 12 HOH HOH . 
E 4 HOH A 100 1300 58 HOH HOH . 
E 4 HOH A 101 1301 163 HOH HOH . 
E 4 HOH A 102 1302 93 HOH HOH . 
E 4 HOH A 103 1303 110 HOH HOH . 
E 4 HOH A 104 1304 81 HOH HOH . 
E 4 HOH A 105 1305 18 HOH HOH . 
E 4 HOH A 106 1306 192 HOH HOH . 
E 4 HOH A 107 1307 217 HOH HOH . 
E 4 HOH A 108 1308 13 HOH HOH . 
E 4 HOH A 109 1309 165 HOH HOH . 
E 4 HOH A 110 1310 33 HOH HOH . 
E 4 HOH A 111 1311 40 HOH HOH . 
E 4 HOH A 112 1312 41 HOH HOH . 
E 4 HOH A 113 1313 135 HOH HOH . 
E 4 HOH A 114 1314 173 HOH HOH . 
E 4 HOH A 115 1315 180 HOH HOH . 
E 4 HOH A 116 1316 116 HOH HOH . 
E 4 HOH A 117 1317 11 HOH HOH . 
E 4 HOH A 118 1318 208 HOH HOH . 
E 4 HOH A 119 1319 56 HOH HOH . 
E 4 HOH A 120 1320 218 HOH HOH . 
E 4 HOH A 121 1321 119 HOH HOH . 
E 4 HOH A 122 1322 178 HOH HOH . 
E 4 HOH A 123 1323 8 HOH HOH . 
E 4 HOH A 124 1324 227 HOH HOH . 
E 4 HOH A 125 1325 234 HOH HOH . 
E 4 HOH A 126 1326 109 HOH HOH . 
E 4 HOH A 127 1327 96 HOH HOH . 
E 4 HOH A 128 1328 189 HOH HOH . 
E 4 HOH A 129 1329 157 HOH HOH . 
E 4 HOH A 130 1330 196 HOH HOH . 
E 4 HOH A 131 1331 122 HOH HOH . 
E 4 HOH A 132 1332 49 HOH HOH . 
E 4 HOH A 133 1333 98 HOH HOH . 
E 4 HOH A 134 1334 228 HOH HOH . 
E 4 HOH A 135 1335 226 HOH HOH . 
E 4 HOH A 136 1336 75 HOH HOH . 
E 4 HOH A 137 1337 200 HOH HOH . 
E 4 HOH A 138 1338 188 HOH HOH . 
E 4 HOH A 139 1339 183 HOH HOH . 
E 4 HOH A 140 1340 206 HOH HOH . 
E 4 HOH A 141 1341 177 HOH HOH . 
E 4 HOH A 142 1342 194 HOH HOH . 
E 4 HOH A 143 1343 203 HOH HOH . 
E 4 HOH A 144 1344 146 HOH HOH . 
E 4 HOH A 145 1345 223 HOH HOH . 
E 4 HOH A 146 1346 134 HOH HOH . 
E 4 HOH A 147 1347 169 HOH HOH . 
E 4 HOH A 148 1348 195 HOH HOH . 
E 4 HOH A 149 1349 209 HOH HOH . 
E 4 HOH A 150 1350 210 HOH HOH . 
E 4 HOH A 151 1351 48 HOH HOH . 
E 4 HOH A 152 1352 125 HOH HOH . 
E 4 HOH A 153 1353 9 HOH HOH . 
E 4 HOH A 154 1354 187 HOH HOH . 
E 4 HOH A 155 1355 221 HOH HOH . 
E 4 HOH A 156 1356 129 HOH HOH . 
E 4 HOH A 157 1357 137 HOH HOH . 
E 4 HOH A 158 1358 36 HOH HOH . 
E 4 HOH A 159 1359 168 HOH HOH . 
E 4 HOH A 160 1360 120 HOH HOH . 
E 4 HOH A 161 1361 238 HOH HOH . 
E 4 HOH A 162 1362 212 HOH HOH . 
E 4 HOH A 163 1363 6 HOH HOH . 
E 4 HOH A 164 1364 145 HOH HOH . 
E 4 HOH A 165 1365 224 HOH HOH . 
E 4 HOH A 166 1366 51 HOH HOH . 
E 4 HOH A 167 1367 161 HOH HOH . 
E 4 HOH A 168 1368 191 HOH HOH . 
E 4 HOH A 169 1369 79 HOH HOH . 
E 4 HOH A 170 1370 89 HOH HOH . 
E 4 HOH A 171 1371 130 HOH HOH . 
E 4 HOH A 172 1372 211 HOH HOH . 
E 4 HOH A 173 1373 112 HOH HOH . 
E 4 HOH A 174 1374 213 HOH HOH . 
E 4 HOH A 175 1375 197 HOH HOH . 
E 4 HOH A 176 1376 184 HOH HOH . 
E 4 HOH A 177 1377 15 HOH HOH . 
E 4 HOH A 178 1378 126 HOH HOH . 
E 4 HOH A 179 1379 219 HOH HOH . 
E 4 HOH A 180 1380 158 HOH HOH . 
E 4 HOH A 181 1381 99 HOH HOH . 
E 4 HOH A 182 1382 232 HOH HOH . 
E 4 HOH A 183 1383 104 HOH HOH . 
E 4 HOH A 184 1384 84 HOH HOH . 
E 4 HOH A 185 1385 127 HOH HOH . 
E 4 HOH A 186 1386 57 HOH HOH . 
E 4 HOH A 187 1387 14 HOH HOH . 
E 4 HOH A 188 1388 97 HOH HOH . 
E 4 HOH A 189 1389 111 HOH HOH . 
E 4 HOH A 190 1390 216 HOH HOH . 
E 4 HOH A 191 1391 160 HOH HOH . 
E 4 HOH A 192 1392 181 HOH HOH . 
E 4 HOH A 193 1393 139 HOH HOH . 
E 4 HOH A 194 1394 231 HOH HOH . 
E 4 HOH A 195 1395 153 HOH HOH . 
E 4 HOH A 196 1396 123 HOH HOH . 
E 4 HOH A 197 1397 66 HOH HOH . 
E 4 HOH A 198 1398 105 HOH HOH . 
E 4 HOH A 199 1399 166 HOH HOH . 
E 4 HOH A 200 1400 205 HOH HOH . 
E 4 HOH A 201 1401 88 HOH HOH . 
E 4 HOH A 202 1402 154 HOH HOH . 
E 4 HOH A 203 1403 77 HOH HOH . 
E 4 HOH A 204 1404 76 HOH HOH . 
E 4 HOH A 205 1405 108 HOH HOH . 
E 4 HOH A 206 1406 121 HOH HOH . 
E 4 HOH A 207 1407 239 HOH HOH . 
E 4 HOH A 208 1408 117 HOH HOH . 
E 4 HOH A 209 1409 65 HOH HOH . 
E 4 HOH A 210 1410 214 HOH HOH . 
E 4 HOH A 211 1411 186 HOH HOH . 
E 4 HOH A 212 1412 101 HOH HOH . 
E 4 HOH A 213 1413 87 HOH HOH . 
E 4 HOH A 214 1414 85 HOH HOH . 
E 4 HOH A 215 1415 114 HOH HOH . 
E 4 HOH A 216 1416 70 HOH HOH . 
E 4 HOH A 217 1417 167 HOH HOH . 
E 4 HOH A 218 1418 95 HOH HOH . 
E 4 HOH A 219 1419 182 HOH HOH . 
E 4 HOH A 220 1420 138 HOH HOH . 
E 4 HOH A 221 1421 193 HOH HOH . 
E 4 HOH A 222 1422 35 HOH HOH . 
E 4 HOH A 223 1423 172 HOH HOH . 
E 4 HOH A 224 1424 233 HOH HOH . 
E 4 HOH A 225 1425 162 HOH HOH . 
E 4 HOH A 226 1426 235 HOH HOH . 
E 4 HOH A 227 1427 174 HOH HOH . 
E 4 HOH A 228 1428 179 HOH HOH . 
E 4 HOH A 229 1429 140 HOH HOH . 
E 4 HOH A 230 1430 142 HOH HOH . 
E 4 HOH A 231 1431 152 HOH HOH . 
E 4 HOH A 232 1432 143 HOH HOH . 
E 4 HOH A 233 1433 90 HOH HOH . 
E 4 HOH A 234 1434 106 HOH HOH . 
E 4 HOH A 235 1435 100 HOH HOH . 
E 4 HOH A 236 1436 133 HOH HOH . 
E 4 HOH A 237 1437 131 HOH HOH . 
E 4 HOH A 238 1438 155 HOH HOH . 
E 4 HOH A 239 1439 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 -11.127 -45.244 30.95 1 54.87 ? C1 EDO 1103 A 1 
HETATM 2 O O1 EDO . . . D 3 -9.91 -45.817 30.444 1 43.92 ? O1 EDO 1103 A 1 
HETATM 3 C C2 EDO . . . D 3 -12.287 -45.424 29.977 1 53.87 ? C2 EDO 1103 A 1 
HETATM 4 O O2 EDO . . . D 3 -12.423 -46.799 29.611 1 51.93 ? O2 EDO 1103 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#