data_5OVI # _model_server_result.job_id aCU5VjlGqxTFVIrfDqcFDw _model_server_result.datetime_utc '2024-11-26 00:03:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ovi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2003}' # _entry.id 5OVI # _exptl.entry_id 5OVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OVI _cell.length_a 39.476 _cell.length_b 84.281 _cell.length_c 175.285 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 146 n n C1 C2 EDO sing 147 n n C1 H11 EDO sing 148 n n C1 H12 EDO sing 149 n n O1 HO1 EDO sing 150 n n C2 O2 EDO sing 151 n n C2 H21 EDO sing 152 n n C2 H22 EDO sing 153 n n O2 HO2 EDO sing 154 n n # _atom_sites.entry_id 5OVI _atom_sites.fract_transf_matrix[1][1] 0.025332 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011865 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AXH A 1 2001 2001 AXH LIG . C 3 EDO A 1 2002 1 EDO EDO . D 3 EDO A 1 2003 2 EDO EDO . E 3 EDO A 1 2004 3 EDO EDO . F 4 HOH A 1 2101 291 HOH HOH . F 4 HOH A 2 2102 80 HOH HOH . F 4 HOH A 3 2103 127 HOH HOH . F 4 HOH A 4 2104 82 HOH HOH . F 4 HOH A 5 2105 170 HOH HOH . F 4 HOH A 6 2106 10 HOH HOH . F 4 HOH A 7 2107 99 HOH HOH . F 4 HOH A 8 2108 67 HOH HOH . F 4 HOH A 9 2109 113 HOH HOH . F 4 HOH A 10 2110 64 HOH HOH . F 4 HOH A 11 2111 59 HOH HOH . F 4 HOH A 12 2112 22 HOH HOH . F 4 HOH A 13 2113 15 HOH HOH . F 4 HOH A 14 2114 160 HOH HOH . F 4 HOH A 15 2115 89 HOH HOH . F 4 HOH A 16 2116 1 HOH HOH . F 4 HOH A 17 2117 256 HOH HOH . F 4 HOH A 18 2118 35 HOH HOH . F 4 HOH A 19 2119 273 HOH HOH . F 4 HOH A 20 2120 179 HOH HOH . F 4 HOH A 21 2121 285 HOH HOH . F 4 HOH A 22 2122 149 HOH HOH . F 4 HOH A 23 2123 101 HOH HOH . F 4 HOH A 24 2124 129 HOH HOH . F 4 HOH A 25 2125 7 HOH HOH . F 4 HOH A 26 2126 23 HOH HOH . F 4 HOH A 27 2127 150 HOH HOH . F 4 HOH A 28 2128 261 HOH HOH . F 4 HOH A 29 2129 216 HOH HOH . F 4 HOH A 30 2130 167 HOH HOH . F 4 HOH A 31 2131 120 HOH HOH . F 4 HOH A 32 2132 195 HOH HOH . F 4 HOH A 33 2133 13 HOH HOH . F 4 HOH A 34 2134 86 HOH HOH . F 4 HOH A 35 2135 152 HOH HOH . F 4 HOH A 36 2136 284 HOH HOH . F 4 HOH A 37 2137 28 HOH HOH . F 4 HOH A 38 2138 33 HOH HOH . F 4 HOH A 39 2139 104 HOH HOH . F 4 HOH A 40 2140 202 HOH HOH . F 4 HOH A 41 2141 29 HOH HOH . F 4 HOH A 42 2142 288 HOH HOH . F 4 HOH A 43 2143 4 HOH HOH . F 4 HOH A 44 2144 6 HOH HOH . F 4 HOH A 45 2145 77 HOH HOH . F 4 HOH A 46 2146 296 HOH HOH . F 4 HOH A 47 2147 96 HOH HOH . F 4 HOH A 48 2148 293 HOH HOH . F 4 HOH A 49 2149 180 HOH HOH . F 4 HOH A 50 2150 92 HOH HOH . F 4 HOH A 51 2151 40 HOH HOH . F 4 HOH A 52 2152 118 HOH HOH . F 4 HOH A 53 2153 173 HOH HOH . F 4 HOH A 54 2154 218 HOH HOH . F 4 HOH A 55 2155 168 HOH HOH . F 4 HOH A 56 2156 209 HOH HOH . F 4 HOH A 57 2157 11 HOH HOH . F 4 HOH A 58 2158 42 HOH HOH . F 4 HOH A 59 2159 253 HOH HOH . F 4 HOH A 60 2160 46 HOH HOH . F 4 HOH A 61 2161 119 HOH HOH . F 4 HOH A 62 2162 78 HOH HOH . F 4 HOH A 63 2163 39 HOH HOH . F 4 HOH A 64 2164 3 HOH HOH . F 4 HOH A 65 2165 81 HOH HOH . F 4 HOH A 66 2166 200 HOH HOH . F 4 HOH A 67 2167 215 HOH HOH . F 4 HOH A 68 2168 5 HOH HOH . F 4 HOH A 69 2169 227 HOH HOH . F 4 HOH A 70 2170 123 HOH HOH . F 4 HOH A 71 2171 297 HOH HOH . F 4 HOH A 72 2172 136 HOH HOH . F 4 HOH A 73 2173 191 HOH HOH . F 4 HOH A 74 2174 57 HOH HOH . F 4 HOH A 75 2175 53 HOH HOH . F 4 HOH A 76 2176 74 HOH HOH . F 4 HOH A 77 2177 100 HOH HOH . F 4 HOH A 78 2178 292 HOH HOH . F 4 HOH A 79 2179 286 HOH HOH . F 4 HOH A 80 2180 207 HOH HOH . F 4 HOH A 81 2181 266 HOH HOH . F 4 HOH A 82 2182 31 HOH HOH . F 4 HOH A 83 2183 58 HOH HOH . F 4 HOH A 84 2184 206 HOH HOH . F 4 HOH A 85 2185 294 HOH HOH . F 4 HOH A 86 2186 144 HOH HOH . F 4 HOH A 87 2187 140 HOH HOH . F 4 HOH A 88 2188 106 HOH HOH . F 4 HOH A 89 2189 25 HOH HOH . F 4 HOH A 90 2190 128 HOH HOH . F 4 HOH A 91 2191 51 HOH HOH . F 4 HOH A 92 2192 87 HOH HOH . F 4 HOH A 93 2193 103 HOH HOH . F 4 HOH A 94 2194 62 HOH HOH . F 4 HOH A 95 2195 32 HOH HOH . F 4 HOH A 96 2196 295 HOH HOH . F 4 HOH A 97 2197 30 HOH HOH . F 4 HOH A 98 2198 108 HOH HOH . F 4 HOH A 99 2199 151 HOH HOH . F 4 HOH A 100 2200 158 HOH HOH . F 4 HOH A 101 2201 155 HOH HOH . F 4 HOH A 102 2202 41 HOH HOH . F 4 HOH A 103 2203 26 HOH HOH . F 4 HOH A 104 2204 142 HOH HOH . F 4 HOH A 105 2205 178 HOH HOH . F 4 HOH A 106 2206 147 HOH HOH . F 4 HOH A 107 2207 19 HOH HOH . F 4 HOH A 108 2208 17 HOH HOH . F 4 HOH A 109 2209 107 HOH HOH . F 4 HOH A 110 2210 65 HOH HOH . F 4 HOH A 111 2211 153 HOH HOH . F 4 HOH A 112 2212 201 HOH HOH . F 4 HOH A 113 2213 91 HOH HOH . F 4 HOH A 114 2214 176 HOH HOH . F 4 HOH A 115 2215 115 HOH HOH . F 4 HOH A 116 2216 72 HOH HOH . F 4 HOH A 117 2217 235 HOH HOH . F 4 HOH A 118 2218 159 HOH HOH . F 4 HOH A 119 2219 61 HOH HOH . F 4 HOH A 120 2220 270 HOH HOH . F 4 HOH A 121 2221 268 HOH HOH . F 4 HOH A 122 2222 94 HOH HOH . F 4 HOH A 123 2223 132 HOH HOH . F 4 HOH A 124 2224 203 HOH HOH . F 4 HOH A 125 2225 232 HOH HOH . F 4 HOH A 126 2226 43 HOH HOH . F 4 HOH A 127 2227 148 HOH HOH . F 4 HOH A 128 2228 289 HOH HOH . F 4 HOH A 129 2229 134 HOH HOH . F 4 HOH A 130 2230 172 HOH HOH . F 4 HOH A 131 2231 145 HOH HOH . F 4 HOH A 132 2232 162 HOH HOH . F 4 HOH A 133 2233 275 HOH HOH . F 4 HOH A 134 2234 52 HOH HOH . F 4 HOH A 135 2235 222 HOH HOH . F 4 HOH A 136 2236 79 HOH HOH . F 4 HOH A 137 2237 38 HOH HOH . F 4 HOH A 138 2238 109 HOH HOH . F 4 HOH A 139 2239 166 HOH HOH . F 4 HOH A 140 2240 254 HOH HOH . F 4 HOH A 141 2241 124 HOH HOH . F 4 HOH A 142 2242 267 HOH HOH . F 4 HOH A 143 2243 2 HOH HOH . F 4 HOH A 144 2244 247 HOH HOH . F 4 HOH A 145 2245 12 HOH HOH . F 4 HOH A 146 2246 177 HOH HOH . F 4 HOH A 147 2247 146 HOH HOH . F 4 HOH A 148 2248 102 HOH HOH . F 4 HOH A 149 2249 98 HOH HOH . F 4 HOH A 150 2250 18 HOH HOH . F 4 HOH A 151 2251 93 HOH HOH . F 4 HOH A 152 2252 250 HOH HOH . F 4 HOH A 153 2253 154 HOH HOH . F 4 HOH A 154 2254 48 HOH HOH . F 4 HOH A 155 2255 238 HOH HOH . F 4 HOH A 156 2256 141 HOH HOH . F 4 HOH A 157 2257 73 HOH HOH . F 4 HOH A 158 2258 265 HOH HOH . F 4 HOH A 159 2259 143 HOH HOH . F 4 HOH A 160 2260 45 HOH HOH . F 4 HOH A 161 2261 54 HOH HOH . F 4 HOH A 162 2262 66 HOH HOH . F 4 HOH A 163 2263 95 HOH HOH . F 4 HOH A 164 2264 157 HOH HOH . F 4 HOH A 165 2265 135 HOH HOH . F 4 HOH A 166 2266 24 HOH HOH . F 4 HOH A 167 2267 112 HOH HOH . F 4 HOH A 168 2268 60 HOH HOH . F 4 HOH A 169 2269 181 HOH HOH . F 4 HOH A 170 2270 133 HOH HOH . F 4 HOH A 171 2271 16 HOH HOH . F 4 HOH A 172 2272 241 HOH HOH . F 4 HOH A 173 2273 71 HOH HOH . F 4 HOH A 174 2274 84 HOH HOH . F 4 HOH A 175 2275 164 HOH HOH . F 4 HOH A 176 2276 37 HOH HOH . F 4 HOH A 177 2277 175 HOH HOH . F 4 HOH A 178 2278 34 HOH HOH . F 4 HOH A 179 2279 36 HOH HOH . F 4 HOH A 180 2280 137 HOH HOH . F 4 HOH A 181 2281 252 HOH HOH . F 4 HOH A 182 2282 44 HOH HOH . F 4 HOH A 183 2283 27 HOH HOH . F 4 HOH A 184 2284 75 HOH HOH . F 4 HOH A 185 2285 114 HOH HOH . F 4 HOH A 186 2286 165 HOH HOH . F 4 HOH A 187 2287 111 HOH HOH . F 4 HOH A 188 2288 236 HOH HOH . F 4 HOH A 189 2289 9 HOH HOH . F 4 HOH A 190 2290 130 HOH HOH . F 4 HOH A 191 2291 281 HOH HOH . F 4 HOH A 192 2292 234 HOH HOH . F 4 HOH A 193 2293 257 HOH HOH . F 4 HOH A 194 2294 163 HOH HOH . F 4 HOH A 195 2295 21 HOH HOH . F 4 HOH A 196 2296 298 HOH HOH . F 4 HOH A 197 2297 245 HOH HOH . F 4 HOH A 198 2298 97 HOH HOH . F 4 HOH A 199 2299 161 HOH HOH . F 4 HOH A 200 2300 212 HOH HOH . F 4 HOH A 201 2301 262 HOH HOH . F 4 HOH A 202 2302 8 HOH HOH . F 4 HOH A 203 2303 169 HOH HOH . F 4 HOH A 204 2304 287 HOH HOH . F 4 HOH A 205 2305 246 HOH HOH . F 4 HOH A 206 2306 117 HOH HOH . F 4 HOH A 207 2307 20 HOH HOH . F 4 HOH A 208 2308 220 HOH HOH . F 4 HOH A 209 2309 274 HOH HOH . F 4 HOH A 210 2310 125 HOH HOH . F 4 HOH A 211 2311 76 HOH HOH . F 4 HOH A 212 2312 217 HOH HOH . F 4 HOH A 213 2313 85 HOH HOH . F 4 HOH A 214 2314 105 HOH HOH . F 4 HOH A 215 2315 131 HOH HOH . F 4 HOH A 216 2316 56 HOH HOH . F 4 HOH A 217 2317 197 HOH HOH . F 4 HOH A 218 2318 243 HOH HOH . F 4 HOH A 219 2319 221 HOH HOH . F 4 HOH A 220 2320 116 HOH HOH . F 4 HOH A 221 2321 280 HOH HOH . F 4 HOH A 222 2322 121 HOH HOH . F 4 HOH A 223 2323 228 HOH HOH . F 4 HOH A 224 2324 224 HOH HOH . F 4 HOH A 225 2325 283 HOH HOH . F 4 HOH A 226 2326 230 HOH HOH . F 4 HOH A 227 2327 90 HOH HOH . F 4 HOH A 228 2328 214 HOH HOH . F 4 HOH A 229 2329 264 HOH HOH . F 4 HOH A 230 2330 186 HOH HOH . F 4 HOH A 231 2331 156 HOH HOH . F 4 HOH A 232 2332 50 HOH HOH . F 4 HOH A 233 2333 110 HOH HOH . F 4 HOH A 234 2334 199 HOH HOH . F 4 HOH A 235 2335 278 HOH HOH . F 4 HOH A 236 2336 248 HOH HOH . F 4 HOH A 237 2337 122 HOH HOH . F 4 HOH A 238 2338 183 HOH HOH . F 4 HOH A 239 2339 208 HOH HOH . F 4 HOH A 240 2340 188 HOH HOH . F 4 HOH A 241 2341 138 HOH HOH . F 4 HOH A 242 2342 88 HOH HOH . F 4 HOH A 243 2343 240 HOH HOH . F 4 HOH A 244 2344 290 HOH HOH . F 4 HOH A 245 2345 244 HOH HOH . F 4 HOH A 246 2346 251 HOH HOH . F 4 HOH A 247 2347 210 HOH HOH . F 4 HOH A 248 2348 83 HOH HOH . F 4 HOH A 249 2349 69 HOH HOH . F 4 HOH A 250 2350 171 HOH HOH . F 4 HOH A 251 2351 233 HOH HOH . F 4 HOH A 252 2352 55 HOH HOH . F 4 HOH A 253 2353 47 HOH HOH . F 4 HOH A 254 2354 70 HOH HOH . F 4 HOH A 255 2355 14 HOH HOH . F 4 HOH A 256 2356 204 HOH HOH . F 4 HOH A 257 2357 255 HOH HOH . F 4 HOH A 258 2358 193 HOH HOH . F 4 HOH A 259 2359 139 HOH HOH . F 4 HOH A 260 2360 258 HOH HOH . F 4 HOH A 261 2361 226 HOH HOH . F 4 HOH A 262 2362 211 HOH HOH . F 4 HOH A 263 2363 239 HOH HOH . F 4 HOH A 264 2364 49 HOH HOH . F 4 HOH A 265 2365 194 HOH HOH . F 4 HOH A 266 2366 259 HOH HOH . F 4 HOH A 267 2367 205 HOH HOH . F 4 HOH A 268 2368 182 HOH HOH . F 4 HOH A 269 2369 277 HOH HOH . F 4 HOH A 270 2370 276 HOH HOH . F 4 HOH A 271 2371 126 HOH HOH . F 4 HOH A 272 2372 249 HOH HOH . F 4 HOH A 273 2373 231 HOH HOH . F 4 HOH A 274 2374 282 HOH HOH . F 4 HOH A 275 2375 242 HOH HOH . F 4 HOH A 276 2376 272 HOH HOH . F 4 HOH A 277 2377 219 HOH HOH . F 4 HOH A 278 2378 237 HOH HOH . F 4 HOH A 279 2379 174 HOH HOH . F 4 HOH A 280 2380 187 HOH HOH . F 4 HOH A 281 2381 198 HOH HOH . F 4 HOH A 282 2382 184 HOH HOH . F 4 HOH A 283 2383 192 HOH HOH . F 4 HOH A 284 2384 229 HOH HOH . F 4 HOH A 285 2385 225 HOH HOH . F 4 HOH A 286 2386 263 HOH HOH . F 4 HOH A 287 2387 213 HOH HOH . F 4 HOH A 288 2388 190 HOH HOH . F 4 HOH A 289 2389 63 HOH HOH . F 4 HOH A 290 2390 260 HOH HOH . F 4 HOH A 291 2391 185 HOH HOH . F 4 HOH A 292 2392 189 HOH HOH . F 4 HOH A 293 2393 269 HOH HOH . F 4 HOH A 294 2394 271 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 6.267 -39.605 20.37 1 53.96 ? C1 EDO 2003 A 1 HETATM 2 O O1 EDO . . . D 3 7.034 -39.846 19.183 1 60.36 ? O1 EDO 2003 A 1 HETATM 3 C C2 EDO . . . D 3 5.798 -38.155 20.393 1 47.9 ? C2 EDO 2003 A 1 HETATM 4 O O2 EDO . . . D 3 4.78 -37.96 19.405 1 42.22 ? O2 EDO 2003 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #