data_5OVU
#
_model_server_result.job_id            6Hzc-Sb3Njb5B0Bh4m1GeA 
_model_server_result.datetime_utc      '2024-12-26 18:38:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ovu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":202}' 
#
_entry.id    5OVU 
#
_exptl.entry_id    5OVU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OVU 
_cell.length_a            96.496 
_cell.length_b            96.496 
_cell.length_c            75.894 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OVU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        168 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 5_555 y,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 0 0 0 
6 'crystal symmetry operation' 6_555 x-y,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 237 n n 
C1 C3 MLI sing 238 n n 
C1 H11 MLI sing 239 n n 
C1 H12 MLI sing 240 n n 
C2 O6 MLI doub 241 n n 
C2 O7 MLI sing 242 n n 
C3 O8 MLI doub 243 n n 
C3 O9 MLI sing 244 n n 
#
_atom_sites.entry_id                     5OVU 
_atom_sites.fract_transf_matrix[1][1]    0.010363 
_atom_sites.fract_transf_matrix[1][2]    0.005983 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011966 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013176 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MLI A 1 201 1 MLI MLI . 
D 2 MLI A 1 202 4 MLI MLI . 
E 2 MLI B 1 201 2 MLI MLI . 
F 2 MLI B 1 202 3 MLI MLI . 
G 3 HOH A 1 301 63 HOH HOH . 
G 3 HOH A 2 302 46 HOH HOH . 
G 3 HOH A 3 303 85 HOH HOH . 
G 3 HOH A 4 304 69 HOH HOH . 
G 3 HOH A 5 305 115 HOH HOH . 
G 3 HOH A 6 306 103 HOH HOH . 
G 3 HOH A 7 307 104 HOH HOH . 
G 3 HOH A 8 308 67 HOH HOH . 
G 3 HOH A 9 309 59 HOH HOH . 
G 3 HOH A 10 310 97 HOH HOH . 
G 3 HOH A 11 311 76 HOH HOH . 
G 3 HOH A 12 312 105 HOH HOH . 
G 3 HOH A 13 313 110 HOH HOH . 
G 3 HOH A 14 314 121 HOH HOH . 
G 3 HOH A 15 315 74 HOH HOH . 
G 3 HOH A 16 316 86 HOH HOH . 
G 3 HOH A 17 317 77 HOH HOH . 
G 3 HOH A 18 318 41 HOH HOH . 
G 3 HOH A 19 319 5 HOH HOH . 
G 3 HOH A 20 320 14 HOH HOH . 
G 3 HOH A 21 321 82 HOH HOH . 
G 3 HOH A 22 322 109 HOH HOH . 
G 3 HOH A 23 323 81 HOH HOH . 
G 3 HOH A 24 324 31 HOH HOH . 
G 3 HOH A 25 325 29 HOH HOH . 
G 3 HOH A 26 326 78 HOH HOH . 
G 3 HOH A 27 327 50 HOH HOH . 
G 3 HOH A 28 328 30 HOH HOH . 
G 3 HOH A 29 329 1 HOH HOH . 
G 3 HOH A 30 330 116 HOH HOH . 
G 3 HOH A 31 331 84 HOH HOH . 
G 3 HOH A 32 332 55 HOH HOH . 
G 3 HOH A 33 333 23 HOH HOH . 
G 3 HOH A 34 334 71 HOH HOH . 
G 3 HOH A 35 335 113 HOH HOH . 
G 3 HOH A 36 336 45 HOH HOH . 
G 3 HOH A 37 337 93 HOH HOH . 
G 3 HOH A 38 338 70 HOH HOH . 
G 3 HOH A 39 339 68 HOH HOH . 
G 3 HOH A 40 340 40 HOH HOH . 
G 3 HOH A 41 341 87 HOH HOH . 
G 3 HOH A 42 342 4 HOH HOH . 
G 3 HOH A 43 343 80 HOH HOH . 
G 3 HOH A 44 344 9 HOH HOH . 
G 3 HOH A 45 345 60 HOH HOH . 
G 3 HOH A 46 346 21 HOH HOH . 
G 3 HOH A 47 347 35 HOH HOH . 
G 3 HOH A 48 348 42 HOH HOH . 
G 3 HOH A 49 349 122 HOH HOH . 
G 3 HOH A 50 350 32 HOH HOH . 
G 3 HOH A 51 351 127 HOH HOH . 
G 3 HOH A 52 352 28 HOH HOH . 
G 3 HOH A 53 353 91 HOH HOH . 
G 3 HOH A 54 354 12 HOH HOH . 
G 3 HOH A 55 355 10 HOH HOH . 
G 3 HOH A 56 356 47 HOH HOH . 
G 3 HOH A 57 357 117 HOH HOH . 
G 3 HOH A 58 358 75 HOH HOH . 
G 3 HOH A 59 359 92 HOH HOH . 
G 3 HOH A 60 360 33 HOH HOH . 
G 3 HOH A 61 361 64 HOH HOH . 
G 3 HOH A 62 362 73 HOH HOH . 
G 3 HOH A 63 363 57 HOH HOH . 
G 3 HOH A 64 364 27 HOH HOH . 
G 3 HOH A 65 365 11 HOH HOH . 
G 3 HOH A 66 366 90 HOH HOH . 
H 3 HOH B 1 301 43 HOH HOH . 
H 3 HOH B 2 302 99 HOH HOH . 
H 3 HOH B 3 303 38 HOH HOH . 
H 3 HOH B 4 304 54 HOH HOH . 
H 3 HOH B 5 305 48 HOH HOH . 
H 3 HOH B 6 306 22 HOH HOH . 
H 3 HOH B 7 307 62 HOH HOH . 
H 3 HOH B 8 308 123 HOH HOH . 
H 3 HOH B 9 309 24 HOH HOH . 
H 3 HOH B 10 310 88 HOH HOH . 
H 3 HOH B 11 311 44 HOH HOH . 
H 3 HOH B 12 312 13 HOH HOH . 
H 3 HOH B 13 313 25 HOH HOH . 
H 3 HOH B 14 314 8 HOH HOH . 
H 3 HOH B 15 315 3 HOH HOH . 
H 3 HOH B 16 316 118 HOH HOH . 
H 3 HOH B 17 317 58 HOH HOH . 
H 3 HOH B 18 318 72 HOH HOH . 
H 3 HOH B 19 319 65 HOH HOH . 
H 3 HOH B 20 320 20 HOH HOH . 
H 3 HOH B 21 321 52 HOH HOH . 
H 3 HOH B 22 322 94 HOH HOH . 
H 3 HOH B 23 323 102 HOH HOH . 
H 3 HOH B 24 324 125 HOH HOH . 
H 3 HOH B 25 325 112 HOH HOH . 
H 3 HOH B 26 326 98 HOH HOH . 
H 3 HOH B 27 327 111 HOH HOH . 
H 3 HOH B 28 328 26 HOH HOH . 
H 3 HOH B 29 329 7 HOH HOH . 
H 3 HOH B 30 330 36 HOH HOH . 
H 3 HOH B 31 331 120 HOH HOH . 
H 3 HOH B 32 332 16 HOH HOH . 
H 3 HOH B 33 333 19 HOH HOH . 
H 3 HOH B 34 334 101 HOH HOH . 
H 3 HOH B 35 335 119 HOH HOH . 
H 3 HOH B 36 336 39 HOH HOH . 
H 3 HOH B 37 337 2 HOH HOH . 
H 3 HOH B 38 338 126 HOH HOH . 
H 3 HOH B 39 339 107 HOH HOH . 
H 3 HOH B 40 340 37 HOH HOH . 
H 3 HOH B 41 341 56 HOH HOH . 
H 3 HOH B 42 342 6 HOH HOH . 
H 3 HOH B 43 343 34 HOH HOH . 
H 3 HOH B 44 344 15 HOH HOH . 
H 3 HOH B 45 345 114 HOH HOH . 
H 3 HOH B 46 346 18 HOH HOH . 
H 3 HOH B 47 347 83 HOH HOH . 
H 3 HOH B 48 348 124 HOH HOH . 
H 3 HOH B 49 349 108 HOH HOH . 
H 3 HOH B 50 350 61 HOH HOH . 
H 3 HOH B 51 351 17 HOH HOH . 
H 3 HOH B 52 352 51 HOH HOH . 
H 3 HOH B 53 353 100 HOH HOH . 
H 3 HOH B 54 354 66 HOH HOH . 
H 3 HOH B 55 355 53 HOH HOH . 
H 3 HOH B 56 356 96 HOH HOH . 
H 3 HOH B 57 357 95 HOH HOH . 
H 3 HOH B 58 358 79 HOH HOH . 
H 3 HOH B 59 359 106 HOH HOH . 
H 3 HOH B 60 360 49 HOH HOH . 
H 3 HOH B 61 361 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . F 2 -17.951 -21.798 -31.555 1 36.27 ? C1 MLI 202 B 1 
HETATM 2 C C2 MLI . . . F 2 -17.282 -21.199 -30.333 1 36.06 ? C2 MLI 202 B 1 
HETATM 3 C C3 MLI . . . F 2 -17.336 -21.372 -32.873 1 36.83 ? C3 MLI 202 B 1 
HETATM 4 O O6 MLI . . . F 2 -16.314 -20.416 -30.462 1 35.69 ? O6 MLI 202 B 1 
HETATM 5 O O7 MLI . . . F 2 -17.738 -21.523 -29.211 1 35.66 ? O7 MLI 202 B 1 
HETATM 6 O O8 MLI . . . F 2 -17.655 -22.011 -33.898 1 37.87 ? O8 MLI 202 B 1 
HETATM 7 O O9 MLI . . . F 2 -16.545 -20.408 -32.916 1 36.97 ? O9 MLI 202 B 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#