data_5OVZ # _model_server_result.job_id 1HHQTanywvcMkzTtcPrf6A _model_server_result.datetime_utc '2024-11-23 02:41:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ovz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":305}' # _entry.id 5OVZ # _exptl.entry_id 5OVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OVZ _cell.length_a 114.26 _cell.length_b 114.26 _cell.length_c 37.91 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,T 1 1 B,N,O,P,Q,R,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 Q N N ? 5 R N N ? 5 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 143 A GLY 167 1_555 J NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc2 J NA NA . A NA 308 1_555 T O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc3 K NA NA . A NA 309 1_555 T O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc4 L NA NA . A NA 310 1_555 T O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.139 ? metalc ? metalc5 M NA NA . A NA 311 1_555 T O HOH . A HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc6 B O THR 161 B THR 185 1_555 R NA NA . B NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OVZ _atom_sites.fract_transf_matrix[1][1] 0.008752 _atom_sites.fract_transf_matrix[1][2] 0.005053 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2W2 A 1 301 301 2W2 2W2 . D 3 PEG A 1 302 1 PEG PEG . E 3 PEG A 1 303 4 PEG PEG . F 4 EDO A 1 304 3 EDO EDO . G 4 EDO A 1 305 4 EDO EDO . H 4 EDO A 1 306 9 EDO EDO . I 4 EDO A 1 307 10 EDO EDO . J 5 NA A 1 308 2 NA NA . K 5 NA A 1 309 3 NA NA . L 5 NA A 1 310 8 NA NA . M 5 NA A 1 311 9 NA NA . N 2 2W2 B 1 301 301 2W2 2W2 . O 4 EDO B 1 302 7 EDO EDO . P 4 EDO B 1 303 8 EDO EDO . Q 5 NA B 1 304 5 NA NA . R 5 NA B 1 305 6 NA NA . S 5 NA B 1 306 7 NA NA . T 6 HOH A 1 401 187 HOH HOH . T 6 HOH A 2 402 48 HOH HOH . T 6 HOH A 3 403 65 HOH HOH . T 6 HOH A 4 404 111 HOH HOH . T 6 HOH A 5 405 459 HOH HOH . T 6 HOH A 6 406 107 HOH HOH . T 6 HOH A 7 407 429 HOH HOH . T 6 HOH A 8 408 77 HOH HOH . T 6 HOH A 9 409 437 HOH HOH . T 6 HOH A 10 410 419 HOH HOH . T 6 HOH A 11 411 416 HOH HOH . T 6 HOH A 12 412 78 HOH HOH . T 6 HOH A 13 413 50 HOH HOH . T 6 HOH A 14 414 86 HOH HOH . T 6 HOH A 15 415 68 HOH HOH . T 6 HOH A 16 416 9 HOH HOH . T 6 HOH A 17 417 112 HOH HOH . T 6 HOH A 18 418 427 HOH HOH . T 6 HOH A 19 419 239 HOH HOH . T 6 HOH A 20 420 46 HOH HOH . T 6 HOH A 21 421 18 HOH HOH . T 6 HOH A 22 422 104 HOH HOH . T 6 HOH A 23 423 127 HOH HOH . T 6 HOH A 24 424 177 HOH HOH . T 6 HOH A 25 425 30 HOH HOH . T 6 HOH A 26 426 53 HOH HOH . T 6 HOH A 27 427 433 HOH HOH . T 6 HOH A 28 428 226 HOH HOH . T 6 HOH A 29 429 37 HOH HOH . T 6 HOH A 30 430 45 HOH HOH . T 6 HOH A 31 431 84 HOH HOH . T 6 HOH A 32 432 414 HOH HOH . T 6 HOH A 33 433 425 HOH HOH . T 6 HOH A 34 434 413 HOH HOH . T 6 HOH A 35 435 27 HOH HOH . T 6 HOH A 36 436 409 HOH HOH . T 6 HOH A 37 437 66 HOH HOH . T 6 HOH A 38 438 23 HOH HOH . T 6 HOH A 39 439 282 HOH HOH . T 6 HOH A 40 440 172 HOH HOH . T 6 HOH A 41 441 463 HOH HOH . T 6 HOH A 42 442 220 HOH HOH . T 6 HOH A 43 443 105 HOH HOH . T 6 HOH A 44 444 212 HOH HOH . T 6 HOH A 45 445 6 HOH HOH . T 6 HOH A 46 446 35 HOH HOH . T 6 HOH A 47 447 228 HOH HOH . T 6 HOH A 48 448 71 HOH HOH . T 6 HOH A 49 449 122 HOH HOH . T 6 HOH A 50 450 51 HOH HOH . T 6 HOH A 51 451 418 HOH HOH . T 6 HOH A 52 452 449 HOH HOH . T 6 HOH A 53 453 41 HOH HOH . T 6 HOH A 54 454 42 HOH HOH . T 6 HOH A 55 455 117 HOH HOH . T 6 HOH A 56 456 178 HOH HOH . T 6 HOH A 57 457 221 HOH HOH . T 6 HOH A 58 458 69 HOH HOH . T 6 HOH A 59 459 54 HOH HOH . T 6 HOH A 60 460 32 HOH HOH . T 6 HOH A 61 461 412 HOH HOH . T 6 HOH A 62 462 218 HOH HOH . T 6 HOH A 63 463 114 HOH HOH . T 6 HOH A 64 464 67 HOH HOH . T 6 HOH A 65 465 133 HOH HOH . T 6 HOH A 66 466 415 HOH HOH . T 6 HOH A 67 467 186 HOH HOH . T 6 HOH A 68 468 73 HOH HOH . T 6 HOH A 69 469 188 HOH HOH . T 6 HOH A 70 470 40 HOH HOH . T 6 HOH A 71 471 403 HOH HOH . T 6 HOH A 72 472 421 HOH HOH . T 6 HOH A 73 473 410 HOH HOH . T 6 HOH A 74 474 70 HOH HOH . T 6 HOH A 75 475 173 HOH HOH . T 6 HOH A 76 476 49 HOH HOH . T 6 HOH A 77 477 20 HOH HOH . T 6 HOH A 78 478 38 HOH HOH . T 6 HOH A 79 479 31 HOH HOH . T 6 HOH A 80 480 215 HOH HOH . T 6 HOH A 81 481 428 HOH HOH . T 6 HOH A 82 482 405 HOH HOH . T 6 HOH A 83 483 407 HOH HOH . T 6 HOH A 84 484 28 HOH HOH . T 6 HOH A 85 485 411 HOH HOH . T 6 HOH A 86 486 458 HOH HOH . T 6 HOH A 87 487 8 HOH HOH . T 6 HOH A 88 488 119 HOH HOH . T 6 HOH A 89 489 402 HOH HOH . T 6 HOH A 90 490 21 HOH HOH . T 6 HOH A 91 491 420 HOH HOH . T 6 HOH A 92 492 36 HOH HOH . T 6 HOH A 93 493 85 HOH HOH . T 6 HOH A 94 494 431 HOH HOH . T 6 HOH A 95 495 7 HOH HOH . T 6 HOH A 96 496 99 HOH HOH . T 6 HOH A 97 497 205 HOH HOH . T 6 HOH A 98 498 75 HOH HOH . T 6 HOH A 99 499 134 HOH HOH . T 6 HOH A 100 500 93 HOH HOH . T 6 HOH A 101 501 55 HOH HOH . T 6 HOH A 102 502 444 HOH HOH . T 6 HOH A 103 503 146 HOH HOH . T 6 HOH A 104 504 219 HOH HOH . T 6 HOH A 105 505 106 HOH HOH . T 6 HOH A 106 506 79 HOH HOH . T 6 HOH A 107 507 29 HOH HOH . T 6 HOH A 108 508 422 HOH HOH . T 6 HOH A 109 509 100 HOH HOH . T 6 HOH A 110 510 211 HOH HOH . T 6 HOH A 111 511 426 HOH HOH . T 6 HOH A 112 512 147 HOH HOH . T 6 HOH A 113 513 90 HOH HOH . T 6 HOH A 114 514 457 HOH HOH . T 6 HOH A 115 515 16 HOH HOH . T 6 HOH A 116 516 145 HOH HOH . T 6 HOH A 117 517 432 HOH HOH . T 6 HOH A 118 518 452 HOH HOH . T 6 HOH A 119 519 406 HOH HOH . T 6 HOH A 120 520 442 HOH HOH . T 6 HOH A 121 521 136 HOH HOH . T 6 HOH A 122 522 182 HOH HOH . T 6 HOH A 123 523 57 HOH HOH . T 6 HOH A 124 524 448 HOH HOH . T 6 HOH A 125 525 80 HOH HOH . T 6 HOH A 126 526 61 HOH HOH . T 6 HOH A 127 527 124 HOH HOH . T 6 HOH A 128 528 467 HOH HOH . T 6 HOH A 129 529 109 HOH HOH . T 6 HOH A 130 530 408 HOH HOH . T 6 HOH A 131 531 189 HOH HOH . T 6 HOH A 132 532 56 HOH HOH . T 6 HOH A 133 533 11 HOH HOH . T 6 HOH A 134 534 460 HOH HOH . T 6 HOH A 135 535 207 HOH HOH . T 6 HOH A 136 536 276 HOH HOH . T 6 HOH A 137 537 417 HOH HOH . T 6 HOH A 138 538 201 HOH HOH . T 6 HOH A 139 539 139 HOH HOH . T 6 HOH A 140 540 140 HOH HOH . T 6 HOH A 141 541 404 HOH HOH . T 6 HOH A 142 542 183 HOH HOH . T 6 HOH A 143 543 210 HOH HOH . T 6 HOH A 144 544 108 HOH HOH . T 6 HOH A 145 545 39 HOH HOH . T 6 HOH A 146 546 445 HOH HOH . T 6 HOH A 147 547 14 HOH HOH . T 6 HOH A 148 548 1 HOH HOH . T 6 HOH A 149 549 234 HOH HOH . T 6 HOH A 150 550 60 HOH HOH . T 6 HOH A 151 551 462 HOH HOH . T 6 HOH A 152 552 250 HOH HOH . T 6 HOH A 153 553 141 HOH HOH . T 6 HOH A 154 554 281 HOH HOH . T 6 HOH A 155 555 468 HOH HOH . T 6 HOH A 156 556 435 HOH HOH . T 6 HOH A 157 557 116 HOH HOH . T 6 HOH A 158 558 461 HOH HOH . T 6 HOH A 159 559 227 HOH HOH . T 6 HOH A 160 560 142 HOH HOH . T 6 HOH A 161 561 203 HOH HOH . T 6 HOH A 162 562 451 HOH HOH . T 6 HOH A 163 563 225 HOH HOH . T 6 HOH A 164 564 216 HOH HOH . T 6 HOH A 165 565 248 HOH HOH . T 6 HOH A 166 566 229 HOH HOH . T 6 HOH A 167 567 424 HOH HOH . T 6 HOH A 168 568 275 HOH HOH . T 6 HOH A 169 569 15 HOH HOH . T 6 HOH A 170 570 125 HOH HOH . T 6 HOH A 171 571 259 HOH HOH . T 6 HOH A 172 572 82 HOH HOH . T 6 HOH A 173 573 192 HOH HOH . T 6 HOH A 174 574 33 HOH HOH . T 6 HOH A 175 575 148 HOH HOH . T 6 HOH A 176 576 447 HOH HOH . T 6 HOH A 177 577 121 HOH HOH . T 6 HOH A 178 578 456 HOH HOH . T 6 HOH A 179 579 10 HOH HOH . T 6 HOH A 180 580 135 HOH HOH . T 6 HOH A 181 581 92 HOH HOH . T 6 HOH A 182 582 267 HOH HOH . T 6 HOH A 183 583 277 HOH HOH . T 6 HOH A 184 584 137 HOH HOH . T 6 HOH A 185 585 268 HOH HOH . T 6 HOH A 186 586 2 HOH HOH . T 6 HOH A 187 587 249 HOH HOH . T 6 HOH A 188 588 280 HOH HOH . T 6 HOH A 189 589 434 HOH HOH . T 6 HOH A 190 590 423 HOH HOH . T 6 HOH A 191 591 144 HOH HOH . T 6 HOH A 192 592 91 HOH HOH . T 6 HOH A 193 593 438 HOH HOH . T 6 HOH A 194 594 138 HOH HOH . T 6 HOH A 195 595 89 HOH HOH . T 6 HOH A 196 596 143 HOH HOH . T 6 HOH A 197 597 19 HOH HOH . T 6 HOH A 198 598 256 HOH HOH . T 6 HOH A 199 599 81 HOH HOH . T 6 HOH A 200 600 58 HOH HOH . T 6 HOH A 201 601 278 HOH HOH . T 6 HOH A 202 602 255 HOH HOH . T 6 HOH A 203 603 279 HOH HOH . U 6 HOH B 1 401 423 HOH HOH . U 6 HOH B 2 402 4 HOH HOH . U 6 HOH B 3 403 170 HOH HOH . U 6 HOH B 4 404 110 HOH HOH . U 6 HOH B 5 405 265 HOH HOH . U 6 HOH B 6 406 5 HOH HOH . U 6 HOH B 7 407 150 HOH HOH . U 6 HOH B 8 408 115 HOH HOH . U 6 HOH B 9 409 411 HOH HOH . U 6 HOH B 10 410 113 HOH HOH . U 6 HOH B 11 411 43 HOH HOH . U 6 HOH B 12 412 131 HOH HOH . U 6 HOH B 13 413 129 HOH HOH . U 6 HOH B 14 414 240 HOH HOH . U 6 HOH B 15 415 161 HOH HOH . U 6 HOH B 16 416 102 HOH HOH . U 6 HOH B 17 417 130 HOH HOH . U 6 HOH B 18 418 180 HOH HOH . U 6 HOH B 19 419 152 HOH HOH . U 6 HOH B 20 420 165 HOH HOH . U 6 HOH B 21 421 13 HOH HOH . U 6 HOH B 22 422 223 HOH HOH . U 6 HOH B 23 423 88 HOH HOH . U 6 HOH B 24 424 3 HOH HOH . U 6 HOH B 25 425 272 HOH HOH . U 6 HOH B 26 426 17 HOH HOH . U 6 HOH B 27 427 401 HOH HOH . U 6 HOH B 28 428 206 HOH HOH . U 6 HOH B 29 429 428 HOH HOH . U 6 HOH B 30 430 402 HOH HOH . U 6 HOH B 31 431 209 HOH HOH . U 6 HOH B 32 432 59 HOH HOH . U 6 HOH B 33 433 22 HOH HOH . U 6 HOH B 34 434 193 HOH HOH . U 6 HOH B 35 435 47 HOH HOH . U 6 HOH B 36 436 425 HOH HOH . U 6 HOH B 37 437 128 HOH HOH . U 6 HOH B 38 438 168 HOH HOH . U 6 HOH B 39 439 74 HOH HOH . U 6 HOH B 40 440 34 HOH HOH . U 6 HOH B 41 441 154 HOH HOH . U 6 HOH B 42 442 195 HOH HOH . U 6 HOH B 43 443 24 HOH HOH . U 6 HOH B 44 444 52 HOH HOH . U 6 HOH B 45 445 26 HOH HOH . U 6 HOH B 46 446 409 HOH HOH . U 6 HOH B 47 447 101 HOH HOH . U 6 HOH B 48 448 159 HOH HOH . U 6 HOH B 49 449 44 HOH HOH . U 6 HOH B 50 450 83 HOH HOH . U 6 HOH B 51 451 222 HOH HOH . U 6 HOH B 52 452 181 HOH HOH . U 6 HOH B 53 453 214 HOH HOH . U 6 HOH B 54 454 404 HOH HOH . U 6 HOH B 55 455 164 HOH HOH . U 6 HOH B 56 456 153 HOH HOH . U 6 HOH B 57 457 184 HOH HOH . U 6 HOH B 58 458 174 HOH HOH . U 6 HOH B 59 459 407 HOH HOH . U 6 HOH B 60 460 270 HOH HOH . U 6 HOH B 61 461 424 HOH HOH . U 6 HOH B 62 462 197 HOH HOH . U 6 HOH B 63 463 97 HOH HOH . U 6 HOH B 64 464 414 HOH HOH . U 6 HOH B 65 465 415 HOH HOH . U 6 HOH B 66 466 95 HOH HOH . U 6 HOH B 67 467 160 HOH HOH . U 6 HOH B 68 468 246 HOH HOH . U 6 HOH B 69 469 273 HOH HOH . U 6 HOH B 70 470 202 HOH HOH . U 6 HOH B 71 471 263 HOH HOH . U 6 HOH B 72 472 283 HOH HOH . U 6 HOH B 73 473 149 HOH HOH . U 6 HOH B 74 474 422 HOH HOH . U 6 HOH B 75 475 98 HOH HOH . U 6 HOH B 76 476 413 HOH HOH . U 6 HOH B 77 477 194 HOH HOH . U 6 HOH B 78 478 274 HOH HOH . U 6 HOH B 79 479 266 HOH HOH . U 6 HOH B 80 480 264 HOH HOH . U 6 HOH B 81 481 96 HOH HOH . U 6 HOH B 82 482 132 HOH HOH . U 6 HOH B 83 483 157 HOH HOH . U 6 HOH B 84 484 190 HOH HOH . U 6 HOH B 85 485 271 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 5 _atom_site.Cartn_x -24.948 _atom_site.Cartn_y 4.249 _atom_site.Cartn_z -16.859 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 82.6 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 305 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #