data_5OWP # _model_server_result.job_id U0cAG63ZlYk_Koi1Mzr2CQ _model_server_result.datetime_utc '2024-11-13 07:36:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5owp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 5OWP # _exptl.entry_id 5OWP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OWP _cell.length_a 35.399 _cell.length_b 68.151 _cell.length_c 90.358 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OWP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf2 A SG CYS 156 H CYS 1029 1_555 A SG CYS 224 H CYS 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 B C ALA 2 D ALA 2 1_555 B N 4FB 3 D 4FB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale2 B C 4FB 3 D 4FB 3 1_555 B N ASP 4 D ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale3 B OG1 THR 5 D THR 5 1_555 F C1 A2G . D A2G 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id A2G _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-galactopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-galactosamine;2-acetamido-2-deoxy-alpha-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C5 A2G sing 18 n n C1 O5 A2G sing 19 n n C1 C2 A2G sing 20 n n C1 H1 A2G sing 21 n n O1 C1 A2G sing 22 n n O1 HO1 A2G sing 23 n n C2 C3 A2G sing 24 n n C2 H2 A2G sing 25 n n N2 C2 A2G sing 26 n n N2 HN2 A2G sing 27 n n C3 C4 A2G sing 28 n n C3 O3 A2G sing 29 n n C3 H3 A2G sing 30 n n O3 HO3 A2G sing 31 n n C4 O4 A2G sing 32 n n C4 H4 A2G sing 33 n n O4 HO4 A2G sing 34 n n C5 C4 A2G sing 35 n n C5 C6 A2G sing 36 n n C5 H5 A2G sing 37 n n C6 O6 A2G sing 38 n n C6 H61 A2G sing 39 n n C7 N2 A2G sing 40 n n O7 C7 A2G doub 41 n n C8 C7 A2G sing 42 n n C8 H81 A2G sing 43 n n C8 H82 A2G sing 44 n n C8 H83 A2G sing 45 n n C6 H62 A2G sing 46 n n O6 HO6 A2G sing 47 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version A2G DGalpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 A2G N-acetyl-a-D-galactopyranosamine 'COMMON NAME' GMML 1 A2G a-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 A2G GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5OWP _atom_sites.fract_transf_matrix[1][1] 0.028249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO H 1 1201 1 EDO EDO . D 3 EDO H 1 1202 2 EDO EDO . E 3 EDO H 1 1203 3 EDO EDO . F 4 A2G D 1 101 10 A2G A2G . G 5 HOH H 1 1301 173 HOH HOH . G 5 HOH H 2 1302 32 HOH HOH . G 5 HOH H 3 1303 72 HOH HOH . G 5 HOH H 4 1304 99 HOH HOH . G 5 HOH H 5 1305 39 HOH HOH . G 5 HOH H 6 1306 81 HOH HOH . G 5 HOH H 7 1307 31 HOH HOH . G 5 HOH H 8 1308 189 HOH HOH . G 5 HOH H 9 1309 32 HOH HOH . G 5 HOH H 10 1310 74 HOH HOH . G 5 HOH H 11 1311 43 HOH HOH . G 5 HOH H 12 1312 195 HOH HOH . G 5 HOH H 13 1313 14 HOH HOH . G 5 HOH H 14 1314 20 HOH HOH . G 5 HOH H 15 1315 45 HOH HOH . G 5 HOH H 16 1316 38 HOH HOH . G 5 HOH H 17 1317 14 HOH HOH . G 5 HOH H 18 1318 11 HOH HOH . G 5 HOH H 19 1319 1 HOH HOH . G 5 HOH H 20 1320 12 HOH HOH . G 5 HOH H 21 1321 27 HOH HOH . G 5 HOH H 22 1322 19 HOH HOH . G 5 HOH H 23 1323 48 HOH HOH . G 5 HOH H 24 1324 13 HOH HOH . G 5 HOH H 25 1325 90 HOH HOH . G 5 HOH H 26 1326 108 HOH HOH . G 5 HOH H 27 1327 76 HOH HOH . G 5 HOH H 28 1328 34 HOH HOH . G 5 HOH H 29 1329 62 HOH HOH . G 5 HOH H 30 1330 75 HOH HOH . G 5 HOH H 31 1331 61 HOH HOH . G 5 HOH H 32 1332 30 HOH HOH . G 5 HOH H 33 1333 10 HOH HOH . G 5 HOH H 34 1334 40 HOH HOH . G 5 HOH H 35 1335 18 HOH HOH . G 5 HOH H 36 1336 176 HOH HOH . G 5 HOH H 37 1337 184 HOH HOH . G 5 HOH H 38 1338 16 HOH HOH . G 5 HOH H 39 1339 68 HOH HOH . G 5 HOH H 40 1340 149 HOH HOH . G 5 HOH H 41 1341 33 HOH HOH . G 5 HOH H 42 1342 20 HOH HOH . G 5 HOH H 43 1343 146 HOH HOH . G 5 HOH H 44 1344 3 HOH HOH . G 5 HOH H 45 1345 29 HOH HOH . G 5 HOH H 46 1346 60 HOH HOH . G 5 HOH H 47 1347 12 HOH HOH . G 5 HOH H 48 1348 115 HOH HOH . G 5 HOH H 49 1349 17 HOH HOH . G 5 HOH H 50 1350 49 HOH HOH . G 5 HOH H 51 1351 200 HOH HOH . G 5 HOH H 52 1352 130 HOH HOH . G 5 HOH H 53 1353 79 HOH HOH . G 5 HOH H 54 1354 26 HOH HOH . G 5 HOH H 55 1355 63 HOH HOH . G 5 HOH H 56 1356 56 HOH HOH . G 5 HOH H 57 1357 24 HOH HOH . G 5 HOH H 58 1358 25 HOH HOH . G 5 HOH H 59 1359 37 HOH HOH . G 5 HOH H 60 1360 89 HOH HOH . G 5 HOH H 61 1361 190 HOH HOH . G 5 HOH H 62 1362 82 HOH HOH . G 5 HOH H 63 1363 188 HOH HOH . G 5 HOH H 64 1364 37 HOH HOH . G 5 HOH H 65 1365 5 HOH HOH . G 5 HOH H 66 1366 35 HOH HOH . G 5 HOH H 67 1367 134 HOH HOH . G 5 HOH H 68 1368 9 HOH HOH . G 5 HOH H 69 1369 17 HOH HOH . G 5 HOH H 70 1370 10 HOH HOH . G 5 HOH H 71 1371 64 HOH HOH . G 5 HOH H 72 1372 86 HOH HOH . G 5 HOH H 73 1373 23 HOH HOH . G 5 HOH H 74 1374 35 HOH HOH . G 5 HOH H 75 1375 7 HOH HOH . G 5 HOH H 76 1376 172 HOH HOH . G 5 HOH H 77 1377 40 HOH HOH . G 5 HOH H 78 1378 91 HOH HOH . G 5 HOH H 79 1379 9 HOH HOH . G 5 HOH H 80 1380 22 HOH HOH . G 5 HOH H 81 1381 199 HOH HOH . G 5 HOH H 82 1382 59 HOH HOH . G 5 HOH H 83 1383 148 HOH HOH . G 5 HOH H 84 1384 136 HOH HOH . G 5 HOH H 85 1385 11 HOH HOH . G 5 HOH H 86 1386 58 HOH HOH . G 5 HOH H 87 1387 128 HOH HOH . G 5 HOH H 88 1388 194 HOH HOH . G 5 HOH H 89 1389 47 HOH HOH . G 5 HOH H 90 1390 6 HOH HOH . G 5 HOH H 91 1391 6 HOH HOH . G 5 HOH H 92 1392 22 HOH HOH . G 5 HOH H 93 1393 25 HOH HOH . G 5 HOH H 94 1394 198 HOH HOH . G 5 HOH H 95 1395 41 HOH HOH . G 5 HOH H 96 1396 36 HOH HOH . G 5 HOH H 97 1397 21 HOH HOH . G 5 HOH H 98 1398 15 HOH HOH . G 5 HOH H 99 1399 179 HOH HOH . G 5 HOH H 100 1400 36 HOH HOH . G 5 HOH H 101 1401 13 HOH HOH . G 5 HOH H 102 1402 140 HOH HOH . G 5 HOH H 103 1403 104 HOH HOH . G 5 HOH H 104 1404 185 HOH HOH . G 5 HOH H 105 1405 50 HOH HOH . G 5 HOH H 106 1406 71 HOH HOH . G 5 HOH H 107 1407 3 HOH HOH . G 5 HOH H 108 1408 44 HOH HOH . G 5 HOH H 109 1409 102 HOH HOH . G 5 HOH H 110 1410 100 HOH HOH . G 5 HOH H 111 1411 118 HOH HOH . G 5 HOH H 112 1412 87 HOH HOH . G 5 HOH H 113 1413 4 HOH HOH . G 5 HOH H 114 1414 96 HOH HOH . G 5 HOH H 115 1415 110 HOH HOH . G 5 HOH H 116 1416 171 HOH HOH . G 5 HOH H 117 1417 178 HOH HOH . G 5 HOH H 118 1418 42 HOH HOH . G 5 HOH H 119 1419 180 HOH HOH . G 5 HOH H 120 1420 70 HOH HOH . G 5 HOH H 121 1421 50 HOH HOH . G 5 HOH H 122 1422 196 HOH HOH . G 5 HOH H 123 1423 193 HOH HOH . G 5 HOH H 124 1424 88 HOH HOH . G 5 HOH H 125 1425 165 HOH HOH . G 5 HOH H 126 1426 186 HOH HOH . G 5 HOH H 127 1427 192 HOH HOH . G 5 HOH H 128 1428 181 HOH HOH . G 5 HOH H 129 1429 139 HOH HOH . G 5 HOH H 130 1430 183 HOH HOH . G 5 HOH H 131 1431 187 HOH HOH . G 5 HOH H 132 1432 141 HOH HOH . G 5 HOH H 133 1433 174 HOH HOH . G 5 HOH H 134 1434 170 HOH HOH . G 5 HOH H 135 1435 191 HOH HOH . G 5 HOH H 136 1436 94 HOH HOH . G 5 HOH H 137 1437 163 HOH HOH . G 5 HOH H 138 1438 67 HOH HOH . G 5 HOH H 139 1439 167 HOH HOH . G 5 HOH H 140 1440 112 HOH HOH . G 5 HOH H 141 1441 197 HOH HOH . H 5 HOH D 1 201 2 HOH HOH . H 5 HOH D 2 202 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 A2G . . . F 4 19.645 13.361 0.119 1 77.53 ? O5 A2G 101 D 1 HETATM 2 C C1 A2G . . . F 4 19.83 13.54 1.527 1 73.91 ? C1 A2G 101 D 1 HETATM 3 C C2 A2G . . . F 4 19.894 15.016 1.939 1 74.03 ? C2 A2G 101 D 1 HETATM 4 N N2 A2G . . . F 4 19.712 15.133 3.388 1 75.42 ? N2 A2G 101 D 1 HETATM 5 C C3 A2G . . . F 4 18.843 15.88 1.222 1 76.16 ? C3 A2G 101 D 1 HETATM 6 O O3 A2G . . . F 4 19.207 17.263 1.36 1 73.74 ? O3 A2G 101 D 1 HETATM 7 C C4 A2G . . . F 4 18.645 15.511 -0.255 1 78.21 ? C4 A2G 101 D 1 HETATM 8 O O4 A2G . . . F 4 19.755 15.935 -1.051 1 78.85 ? O4 A2G 101 D 1 HETATM 9 C C5 A2G . . . F 4 18.466 14.001 -0.381 1 79.99 ? C5 A2G 101 D 1 HETATM 10 C C6 A2G . . . F 4 18.206 13.532 -1.806 1 81.1 ? C6 A2G 101 D 1 HETATM 11 O O6 A2G . . . F 4 17.551 12.259 -1.73 1 79.62 ? O6 A2G 101 D 1 HETATM 12 C C7 A2G . . . F 4 20.598 14.713 4.296 1 71.88 ? C7 A2G 101 D 1 HETATM 13 O O7 A2G . . . F 4 21.676 14.219 4 1 75.08 ? O7 A2G 101 D 1 HETATM 14 C C8 A2G . . . F 4 20.172 14.878 5.726 1 70.5 ? C8 A2G 101 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #