data_5OWQ # _model_server_result.job_id Ixsq0OIfjhzhTY-u7W3Oww _model_server_result.datetime_utc '2024-11-15 20:33:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5owq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 5OWQ # _exptl.entry_id 5OWQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.6 _cell.angle_gamma 90 _cell.entry_id 5OWQ _cell.length_a 57.57 _cell.length_b 50.4 _cell.length_c 114.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OWQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 A,B,C,D 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 191 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 206 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 191 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 206 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.055 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H21 F N6 O' _chem_comp.formula_weight 392.429 _chem_comp.id 38O _chem_comp.mon_nstd_flag . _chem_comp.name 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dovitinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 38O sing 1 n n C4 N5 38O sing 2 n n C3 N2 38O sing 3 n n F22 C21 38O sing 4 n n N2 C1 38O sing 5 n n N2 C7 38O sing 6 n n N5 C6 38O sing 7 n n N5 C8 38O sing 8 n n N19 C18 38O sing 9 n n C6 C7 38O sing 10 n n C9 C8 38O doub 11 n y C9 C10 38O sing 12 n y C8 C16 38O sing 13 n y C21 C23 38O doub 14 n y C21 C20 38O sing 15 n y N11 C10 38O sing 16 n y N11 C12 38O doub 17 n y C10 C14 38O doub 18 n y C23 C24 38O sing 19 n y C18 C20 38O sing 20 n n C18 C17 38O doub 21 n n C16 C15 38O doub 22 n y C20 C26 38O doub 23 n y C12 C17 38O sing 24 n n C12 N13 38O sing 25 n y C14 C15 38O sing 26 n y C14 N13 38O sing 27 n y C17 C28 38O sing 28 n n C24 C25 38O doub 29 n y C26 C25 38O sing 30 n y C26 N27 38O sing 31 n n C28 N27 38O sing 32 n n C28 O29 38O doub 33 n n C1 H1 38O sing 34 n n C1 H2 38O sing 35 n n C1 H3 38O sing 36 n n C3 H4 38O sing 37 n n C3 H5 38O sing 38 n n C4 H6 38O sing 39 n n C4 H7 38O sing 40 n n C6 H8 38O sing 41 n n C6 H9 38O sing 42 n n C7 H10 38O sing 43 n n C7 H11 38O sing 44 n n N13 H12 38O sing 45 n n C15 H13 38O sing 46 n n C16 H14 38O sing 47 n n C23 H15 38O sing 48 n n C24 H16 38O sing 49 n n C9 H18 38O sing 50 n n N19 H20 38O sing 51 n n N19 H21 38O sing 52 n n C25 H22 38O sing 53 n n N27 H23 38O sing 54 n n # _atom_sites.entry_id 5OWQ _atom_sites.fract_transf_matrix[1][1] 0.01737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00201 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 38O A 1 600 600 38O dov . D 2 38O B 1 600 600 38O dov . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 38O . . . D 2 27.558 54.231 10.851 1 112.72 ? C1 38O 600 B 1 HETATM 2 C C3 38O . . . D 2 26.096 52.827 12.171 1 107.81 ? C3 38O 600 B 1 HETATM 3 C C4 38O . . . D 2 27.214 52.22 13.006 1 106.77 ? C4 38O 600 B 1 HETATM 4 C C6 38O . . . D 2 28.221 51.339 10.984 1 105.24 ? C6 38O 600 B 1 HETATM 5 C C7 38O . . . D 2 27.091 51.946 10.174 1 109.28 ? C7 38O 600 B 1 HETATM 6 C C8 38O . . . D 2 27.683 49.797 12.85 1 96.49 ? C8 38O 600 B 1 HETATM 7 C C12 38O . . . D 2 28.862 45.667 14.229 1 84.2 ? C12 38O 600 B 1 HETATM 8 N N13 38O . . . D 2 27.593 45.981 14.378 1 92.85 ? N13 38O 600 B 1 HETATM 9 C C15 38O . . . D 2 26.326 48.084 13.842 1 96.5 ? C15 38O 600 B 1 HETATM 10 C C16 38O . . . D 2 26.454 49.348 13.305 1 97.26 ? C16 38O 600 B 1 HETATM 11 C C17 38O . . . D 2 29.35 44.333 14.604 1 78.78 ? C17 38O 600 B 1 HETATM 12 C C18 38O . . . D 2 28.595 43.536 15.546 1 75.25 ? C18 38O 600 B 1 HETATM 13 C C21 38O . . . D 2 28.322 41.408 16.813 1 74.24 ? C21 38O 600 B 1 HETATM 14 C C23 38O . . . D 2 28.742 40.146 17.107 1 71.65 ? C23 38O 600 B 1 HETATM 15 C C24 38O . . . D 2 29.876 39.64 16.48 1 72.45 ? C24 38O 600 B 1 HETATM 16 O O29 38O . . . D 2 31.213 44.333 13.145 1 76.12 ? O29 38O 600 B 1 HETATM 17 N N2 38O . . . D 2 26.562 53.154 10.823 1 112.63 ? N2 38O 600 B 1 HETATM 18 N N5 38O . . . D 2 27.757 51.037 12.336 1 103.34 ? N5 38O 600 B 1 HETATM 19 C C9 38O . . . D 2 28.809 48.993 12.911 1 90.66 ? C9 38O 600 B 1 HETATM 20 C C10 38O . . . D 2 28.689 47.73 13.436 1 89.94 ? C10 38O 600 B 1 HETATM 21 N N11 38O . . . D 2 29.574 46.678 13.648 1 86.63 ? N11 38O 600 B 1 HETATM 22 C C14 38O . . . D 2 27.458 47.271 13.9 1 94.18 ? C14 38O 600 B 1 HETATM 23 N N19 38O . . . D 2 27.479 44.039 16.128 1 73.12 ? N19 38O 600 B 1 HETATM 24 C C20 38O . . . D 2 29.018 42.216 15.882 1 75.33 ? C20 38O 600 B 1 HETATM 25 F F22 38O . . . D 2 27.206 41.879 17.433 1 72.06 ? F22 38O 600 B 1 HETATM 26 C C25 38O . . . D 2 30.596 40.398 15.57 1 72.05 ? C25 38O 600 B 1 HETATM 27 C C26 38O . . . D 2 30.168 41.691 15.256 1 72.83 ? C26 38O 600 B 1 HETATM 28 N N27 38O . . . D 2 30.86 42.474 14.337 1 70.68 ? N27 38O 600 B 1 HETATM 29 C C28 38O . . . D 2 30.51 43.744 13.974 1 75 ? C28 38O 600 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 29 #