data_5OWY # _model_server_result.job_id NuuTlTbCyKDul9dv95P2Kw _model_server_result.datetime_utc '2024-11-13 06:53:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5owy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5OWY # _exptl.entry_id 5OWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OWY _cell.length_a 128.46 _cell.length_b 128.46 _cell.length_c 116.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.19 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.411 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 5OWY _atom_sites.fract_transf_matrix[1][1] 0.007785 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007785 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 901 903 PLP PLP . C 3 B0W A 1 902 1 B0W 252 . D 4 IMP A 1 903 920 IMP IMP . E 5 HOH A 1 1001 258 HOH HOH . E 5 HOH A 2 1002 185 HOH HOH . E 5 HOH A 3 1003 42 HOH HOH . E 5 HOH A 4 1004 195 HOH HOH . E 5 HOH A 5 1005 123 HOH HOH . E 5 HOH A 6 1006 210 HOH HOH . E 5 HOH A 7 1007 239 HOH HOH . E 5 HOH A 8 1008 84 HOH HOH . E 5 HOH A 9 1009 49 HOH HOH . E 5 HOH A 10 1010 23 HOH HOH . E 5 HOH A 11 1011 57 HOH HOH . E 5 HOH A 12 1012 19 HOH HOH . E 5 HOH A 13 1013 141 HOH HOH . E 5 HOH A 14 1014 75 HOH HOH . E 5 HOH A 15 1015 146 HOH HOH . E 5 HOH A 16 1016 143 HOH HOH . E 5 HOH A 17 1017 4 HOH HOH . E 5 HOH A 18 1018 86 HOH HOH . E 5 HOH A 19 1019 77 HOH HOH . E 5 HOH A 20 1020 269 HOH HOH . E 5 HOH A 21 1021 59 HOH HOH . E 5 HOH A 22 1022 139 HOH HOH . E 5 HOH A 23 1023 55 HOH HOH . E 5 HOH A 24 1024 13 HOH HOH . E 5 HOH A 25 1025 197 HOH HOH . E 5 HOH A 26 1026 72 HOH HOH . E 5 HOH A 27 1027 217 HOH HOH . E 5 HOH A 28 1028 29 HOH HOH . E 5 HOH A 29 1029 158 HOH HOH . E 5 HOH A 30 1030 153 HOH HOH . E 5 HOH A 31 1031 251 HOH HOH . E 5 HOH A 32 1032 227 HOH HOH . E 5 HOH A 33 1033 238 HOH HOH . E 5 HOH A 34 1034 165 HOH HOH . E 5 HOH A 35 1035 188 HOH HOH . E 5 HOH A 36 1036 162 HOH HOH . E 5 HOH A 37 1037 178 HOH HOH . E 5 HOH A 38 1038 261 HOH HOH . E 5 HOH A 39 1039 206 HOH HOH . E 5 HOH A 40 1040 109 HOH HOH . E 5 HOH A 41 1041 149 HOH HOH . E 5 HOH A 42 1042 22 HOH HOH . E 5 HOH A 43 1043 117 HOH HOH . E 5 HOH A 44 1044 95 HOH HOH . E 5 HOH A 45 1045 134 HOH HOH . E 5 HOH A 46 1046 107 HOH HOH . E 5 HOH A 47 1047 214 HOH HOH . E 5 HOH A 48 1048 88 HOH HOH . E 5 HOH A 49 1049 126 HOH HOH . E 5 HOH A 50 1050 16 HOH HOH . E 5 HOH A 51 1051 56 HOH HOH . E 5 HOH A 52 1052 90 HOH HOH . E 5 HOH A 53 1053 256 HOH HOH . E 5 HOH A 54 1054 166 HOH HOH . E 5 HOH A 55 1055 69 HOH HOH . E 5 HOH A 56 1056 41 HOH HOH . E 5 HOH A 57 1057 46 HOH HOH . E 5 HOH A 58 1058 106 HOH HOH . E 5 HOH A 59 1059 66 HOH HOH . E 5 HOH A 60 1060 112 HOH HOH . E 5 HOH A 61 1061 183 HOH HOH . E 5 HOH A 62 1062 70 HOH HOH . E 5 HOH A 63 1063 120 HOH HOH . E 5 HOH A 64 1064 151 HOH HOH . E 5 HOH A 65 1065 116 HOH HOH . E 5 HOH A 66 1066 119 HOH HOH . E 5 HOH A 67 1067 282 HOH HOH . E 5 HOH A 68 1068 280 HOH HOH . E 5 HOH A 69 1069 202 HOH HOH . E 5 HOH A 70 1070 76 HOH HOH . E 5 HOH A 71 1071 231 HOH HOH . E 5 HOH A 72 1072 131 HOH HOH . E 5 HOH A 73 1073 184 HOH HOH . E 5 HOH A 74 1074 211 HOH HOH . E 5 HOH A 75 1075 7 HOH HOH . E 5 HOH A 76 1076 182 HOH HOH . E 5 HOH A 77 1077 257 HOH HOH . E 5 HOH A 78 1078 128 HOH HOH . E 5 HOH A 79 1079 21 HOH HOH . E 5 HOH A 80 1080 209 HOH HOH . E 5 HOH A 81 1081 10 HOH HOH . E 5 HOH A 82 1082 285 HOH HOH . E 5 HOH A 83 1083 169 HOH HOH . E 5 HOH A 84 1084 50 HOH HOH . E 5 HOH A 85 1085 144 HOH HOH . E 5 HOH A 86 1086 186 HOH HOH . E 5 HOH A 87 1087 80 HOH HOH . E 5 HOH A 88 1088 173 HOH HOH . E 5 HOH A 89 1089 176 HOH HOH . E 5 HOH A 90 1090 26 HOH HOH . E 5 HOH A 91 1091 244 HOH HOH . E 5 HOH A 92 1092 105 HOH HOH . E 5 HOH A 93 1093 254 HOH HOH . E 5 HOH A 94 1094 1 HOH HOH . E 5 HOH A 95 1095 136 HOH HOH . E 5 HOH A 96 1096 215 HOH HOH . E 5 HOH A 97 1097 263 HOH HOH . E 5 HOH A 98 1098 71 HOH HOH . E 5 HOH A 99 1099 135 HOH HOH . E 5 HOH A 100 1100 216 HOH HOH . E 5 HOH A 101 1101 34 HOH HOH . E 5 HOH A 102 1102 226 HOH HOH . E 5 HOH A 103 1103 43 HOH HOH . E 5 HOH A 104 1104 32 HOH HOH . E 5 HOH A 105 1105 96 HOH HOH . E 5 HOH A 106 1106 133 HOH HOH . E 5 HOH A 107 1107 18 HOH HOH . E 5 HOH A 108 1108 45 HOH HOH . E 5 HOH A 109 1109 259 HOH HOH . E 5 HOH A 110 1110 6 HOH HOH . E 5 HOH A 111 1111 191 HOH HOH . E 5 HOH A 112 1112 233 HOH HOH . E 5 HOH A 113 1113 98 HOH HOH . E 5 HOH A 114 1114 129 HOH HOH . E 5 HOH A 115 1115 273 HOH HOH . E 5 HOH A 116 1116 281 HOH HOH . E 5 HOH A 117 1117 163 HOH HOH . E 5 HOH A 118 1118 17 HOH HOH . E 5 HOH A 119 1119 3 HOH HOH . E 5 HOH A 120 1120 142 HOH HOH . E 5 HOH A 121 1121 250 HOH HOH . E 5 HOH A 122 1122 11 HOH HOH . E 5 HOH A 123 1123 79 HOH HOH . E 5 HOH A 124 1124 290 HOH HOH . E 5 HOH A 125 1125 27 HOH HOH . E 5 HOH A 126 1126 115 HOH HOH . E 5 HOH A 127 1127 44 HOH HOH . E 5 HOH A 128 1128 65 HOH HOH . E 5 HOH A 129 1129 74 HOH HOH . E 5 HOH A 130 1130 52 HOH HOH . E 5 HOH A 131 1131 14 HOH HOH . E 5 HOH A 132 1132 159 HOH HOH . E 5 HOH A 133 1133 82 HOH HOH . E 5 HOH A 134 1134 31 HOH HOH . E 5 HOH A 135 1135 271 HOH HOH . E 5 HOH A 136 1136 87 HOH HOH . E 5 HOH A 137 1137 68 HOH HOH . E 5 HOH A 138 1138 229 HOH HOH . E 5 HOH A 139 1139 121 HOH HOH . E 5 HOH A 140 1140 28 HOH HOH . E 5 HOH A 141 1141 122 HOH HOH . E 5 HOH A 142 1142 147 HOH HOH . E 5 HOH A 143 1143 148 HOH HOH . E 5 HOH A 144 1144 33 HOH HOH . E 5 HOH A 145 1145 223 HOH HOH . E 5 HOH A 146 1146 140 HOH HOH . E 5 HOH A 147 1147 164 HOH HOH . E 5 HOH A 148 1148 85 HOH HOH . E 5 HOH A 149 1149 81 HOH HOH . E 5 HOH A 150 1150 193 HOH HOH . E 5 HOH A 151 1151 35 HOH HOH . E 5 HOH A 152 1152 60 HOH HOH . E 5 HOH A 153 1153 104 HOH HOH . E 5 HOH A 154 1154 274 HOH HOH . E 5 HOH A 155 1155 260 HOH HOH . E 5 HOH A 156 1156 181 HOH HOH . E 5 HOH A 157 1157 150 HOH HOH . E 5 HOH A 158 1158 83 HOH HOH . E 5 HOH A 159 1159 113 HOH HOH . E 5 HOH A 160 1160 99 HOH HOH . E 5 HOH A 161 1161 15 HOH HOH . E 5 HOH A 162 1162 220 HOH HOH . E 5 HOH A 163 1163 175 HOH HOH . E 5 HOH A 164 1164 110 HOH HOH . E 5 HOH A 165 1165 132 HOH HOH . E 5 HOH A 166 1166 277 HOH HOH . E 5 HOH A 167 1167 218 HOH HOH . E 5 HOH A 168 1168 228 HOH HOH . E 5 HOH A 169 1169 264 HOH HOH . E 5 HOH A 170 1170 245 HOH HOH . E 5 HOH A 171 1171 203 HOH HOH . E 5 HOH A 172 1172 145 HOH HOH . E 5 HOH A 173 1173 161 HOH HOH . E 5 HOH A 174 1174 138 HOH HOH . E 5 HOH A 175 1175 67 HOH HOH . E 5 HOH A 176 1176 267 HOH HOH . E 5 HOH A 177 1177 221 HOH HOH . E 5 HOH A 178 1178 100 HOH HOH . E 5 HOH A 179 1179 53 HOH HOH . E 5 HOH A 180 1180 225 HOH HOH . E 5 HOH A 181 1181 97 HOH HOH . E 5 HOH A 182 1182 240 HOH HOH . E 5 HOH A 183 1183 278 HOH HOH . E 5 HOH A 184 1184 9 HOH HOH . E 5 HOH A 185 1185 167 HOH HOH . E 5 HOH A 186 1186 232 HOH HOH . E 5 HOH A 187 1187 204 HOH HOH . E 5 HOH A 188 1188 51 HOH HOH . E 5 HOH A 189 1189 249 HOH HOH . E 5 HOH A 190 1190 30 HOH HOH . E 5 HOH A 191 1191 73 HOH HOH . E 5 HOH A 192 1192 64 HOH HOH . E 5 HOH A 193 1193 94 HOH HOH . E 5 HOH A 194 1194 38 HOH HOH . E 5 HOH A 195 1195 242 HOH HOH . E 5 HOH A 196 1196 130 HOH HOH . E 5 HOH A 197 1197 47 HOH HOH . E 5 HOH A 198 1198 103 HOH HOH . E 5 HOH A 199 1199 189 HOH HOH . E 5 HOH A 200 1200 118 HOH HOH . E 5 HOH A 201 1201 102 HOH HOH . E 5 HOH A 202 1202 265 HOH HOH . E 5 HOH A 203 1203 172 HOH HOH . E 5 HOH A 204 1204 243 HOH HOH . E 5 HOH A 205 1205 124 HOH HOH . E 5 HOH A 206 1206 37 HOH HOH . E 5 HOH A 207 1207 187 HOH HOH . E 5 HOH A 208 1208 127 HOH HOH . E 5 HOH A 209 1209 207 HOH HOH . E 5 HOH A 210 1210 114 HOH HOH . E 5 HOH A 211 1211 152 HOH HOH . E 5 HOH A 212 1212 275 HOH HOH . E 5 HOH A 213 1213 39 HOH HOH . E 5 HOH A 214 1214 54 HOH HOH . E 5 HOH A 215 1215 198 HOH HOH . E 5 HOH A 216 1216 108 HOH HOH . E 5 HOH A 217 1217 25 HOH HOH . E 5 HOH A 218 1218 8 HOH HOH . E 5 HOH A 219 1219 154 HOH HOH . E 5 HOH A 220 1220 48 HOH HOH . E 5 HOH A 221 1221 137 HOH HOH . E 5 HOH A 222 1222 268 HOH HOH . E 5 HOH A 223 1223 40 HOH HOH . E 5 HOH A 224 1224 155 HOH HOH . E 5 HOH A 225 1225 255 HOH HOH . E 5 HOH A 226 1226 101 HOH HOH . E 5 HOH A 227 1227 247 HOH HOH . E 5 HOH A 228 1228 224 HOH HOH . E 5 HOH A 229 1229 171 HOH HOH . E 5 HOH A 230 1230 58 HOH HOH . E 5 HOH A 231 1231 283 HOH HOH . E 5 HOH A 232 1232 196 HOH HOH . E 5 HOH A 233 1233 199 HOH HOH . E 5 HOH A 234 1234 236 HOH HOH . E 5 HOH A 235 1235 63 HOH HOH . E 5 HOH A 236 1236 61 HOH HOH . E 5 HOH A 237 1237 20 HOH HOH . E 5 HOH A 238 1238 92 HOH HOH . E 5 HOH A 239 1239 179 HOH HOH . E 5 HOH A 240 1240 270 HOH HOH . E 5 HOH A 241 1241 180 HOH HOH . E 5 HOH A 242 1242 156 HOH HOH . E 5 HOH A 243 1243 2 HOH HOH . E 5 HOH A 244 1244 24 HOH HOH . E 5 HOH A 245 1245 12 HOH HOH . E 5 HOH A 246 1246 157 HOH HOH . E 5 HOH A 247 1247 5 HOH HOH . E 5 HOH A 248 1248 284 HOH HOH . E 5 HOH A 249 1249 272 HOH HOH . E 5 HOH A 250 1250 289 HOH HOH . E 5 HOH A 251 1251 200 HOH HOH . E 5 HOH A 252 1252 219 HOH HOH . E 5 HOH A 253 1253 111 HOH HOH . E 5 HOH A 254 1254 36 HOH HOH . E 5 HOH A 255 1255 168 HOH HOH . E 5 HOH A 256 1256 78 HOH HOH . E 5 HOH A 257 1257 160 HOH HOH . E 5 HOH A 258 1258 235 HOH HOH . E 5 HOH A 259 1259 237 HOH HOH . E 5 HOH A 260 1260 287 HOH HOH . E 5 HOH A 261 1261 286 HOH HOH . E 5 HOH A 262 1262 266 HOH HOH . E 5 HOH A 263 1263 291 HOH HOH . E 5 HOH A 264 1264 292 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 24.661 25.703 30.309 1 12.35 ? N1 PLP 901 A 1 HETATM 2 C C2 PLP . . . B 2 23.565 24.979 30.577 1 12.82 ? C2 PLP 901 A 1 HETATM 3 C C2A PLP . . . B 2 22.618 25.374 31.667 1 14.14 ? C2A PLP 901 A 1 HETATM 4 C C3 PLP . . . B 2 23.296 23.762 29.838 1 11.94 ? C3 PLP 901 A 1 HETATM 5 O O3 PLP . . . B 2 22.206 22.996 30.079 1 12.08 ? O3 PLP 901 A 1 HETATM 6 C C4 PLP . . . B 2 24.225 23.386 28.77 1 10.84 ? C4 PLP 901 A 1 HETATM 7 C C4A PLP . . . B 2 24.041 22.155 27.936 1 11.72 ? C4A PLP 901 A 1 HETATM 8 C C5 PLP . . . B 2 25.383 24.236 28.551 1 11.91 ? C5 PLP 901 A 1 HETATM 9 C C6 PLP . . . B 2 25.54 25.371 29.334 1 11.48 ? C6 PLP 901 A 1 HETATM 10 C C5A PLP . . . B 2 26.366 23.914 27.446 1 13.43 ? C5A PLP 901 A 1 HETATM 11 O O4P PLP . . . B 2 25.887 24.509 26.233 1 13.19 ? O4P PLP 901 A 1 HETATM 12 P P PLP . . . B 2 26.934 24.811 25.028 1 13.77 ? P PLP 901 A 1 HETATM 13 O O1P PLP . . . B 2 25.989 25.481 24.059 1 13.52 ? O1P PLP 901 A 1 HETATM 14 O O2P PLP . . . B 2 27.965 25.715 25.629 1 14.1 ? O2P PLP 901 A 1 HETATM 15 O O3P PLP . . . B 2 27.48 23.468 24.626 1 13.49 ? O3P PLP 901 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #