data_5OX1 # _model_server_result.job_id rCFN4ExY83AiGN6EcWtCPg _model_server_result.datetime_utc '2025-08-03 19:12:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ox1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 5OX1 # _exptl.entry_id 5OX1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OX1 _cell.length_a 128.66 _cell.length_b 128.66 _cell.length_c 116.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 116.21 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 681 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 680 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 903 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.409 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 128 n n S C1 DMS sing 129 n n S C2 DMS sing 130 n n C1 H11 DMS sing 131 n n C1 H12 DMS sing 132 n n C1 H13 DMS sing 133 n n C2 H21 DMS sing 134 n n C2 H22 DMS sing 135 n n C2 H23 DMS sing 136 n n # _atom_sites.entry_id 5OX1 _atom_sites.fract_transf_matrix[1][1] 0.007772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B1K A 1 901 1 B1K 270 . C 3 DMS A 1 902 2 DMS DMS . D 4 PLP A 1 903 903 PLP PLP . E 5 HOH A 1 1001 187 HOH HOH . E 5 HOH A 2 1002 276 HOH HOH . E 5 HOH A 3 1003 286 HOH HOH . E 5 HOH A 4 1004 123 HOH HOH . E 5 HOH A 5 1005 42 HOH HOH . E 5 HOH A 6 1006 140 HOH HOH . E 5 HOH A 7 1007 282 HOH HOH . E 5 HOH A 8 1008 218 HOH HOH . E 5 HOH A 9 1009 78 HOH HOH . E 5 HOH A 10 1010 200 HOH HOH . E 5 HOH A 11 1011 85 HOH HOH . E 5 HOH A 12 1012 11 HOH HOH . E 5 HOH A 13 1013 71 HOH HOH . E 5 HOH A 14 1014 156 HOH HOH . E 5 HOH A 15 1015 76 HOH HOH . E 5 HOH A 16 1016 209 HOH HOH . E 5 HOH A 17 1017 302 HOH HOH . E 5 HOH A 18 1018 90 HOH HOH . E 5 HOH A 19 1019 191 HOH HOH . E 5 HOH A 20 1020 57 HOH HOH . E 5 HOH A 21 1021 222 HOH HOH . E 5 HOH A 22 1022 186 HOH HOH . E 5 HOH A 23 1023 20 HOH HOH . E 5 HOH A 24 1024 55 HOH HOH . E 5 HOH A 25 1025 179 HOH HOH . E 5 HOH A 26 1026 152 HOH HOH . E 5 HOH A 27 1027 165 HOH HOH . E 5 HOH A 28 1028 213 HOH HOH . E 5 HOH A 29 1029 17 HOH HOH . E 5 HOH A 30 1030 94 HOH HOH . E 5 HOH A 31 1031 261 HOH HOH . E 5 HOH A 32 1032 248 HOH HOH . E 5 HOH A 33 1033 66 HOH HOH . E 5 HOH A 34 1034 29 HOH HOH . E 5 HOH A 35 1035 145 HOH HOH . E 5 HOH A 36 1036 162 HOH HOH . E 5 HOH A 37 1037 190 HOH HOH . E 5 HOH A 38 1038 289 HOH HOH . E 5 HOH A 39 1039 142 HOH HOH . E 5 HOH A 40 1040 273 HOH HOH . E 5 HOH A 41 1041 244 HOH HOH . E 5 HOH A 42 1042 59 HOH HOH . E 5 HOH A 43 1043 49 HOH HOH . E 5 HOH A 44 1044 3 HOH HOH . E 5 HOH A 45 1045 14 HOH HOH . E 5 HOH A 46 1046 296 HOH HOH . E 5 HOH A 47 1047 115 HOH HOH . E 5 HOH A 48 1048 8 HOH HOH . E 5 HOH A 49 1049 5 HOH HOH . E 5 HOH A 50 1050 166 HOH HOH . E 5 HOH A 51 1051 205 HOH HOH . E 5 HOH A 52 1052 81 HOH HOH . E 5 HOH A 53 1053 21 HOH HOH . E 5 HOH A 54 1054 125 HOH HOH . E 5 HOH A 55 1055 148 HOH HOH . E 5 HOH A 56 1056 118 HOH HOH . E 5 HOH A 57 1057 70 HOH HOH . E 5 HOH A 58 1058 133 HOH HOH . E 5 HOH A 59 1059 127 HOH HOH . E 5 HOH A 60 1060 89 HOH HOH . E 5 HOH A 61 1061 178 HOH HOH . E 5 HOH A 62 1062 87 HOH HOH . E 5 HOH A 63 1063 46 HOH HOH . E 5 HOH A 64 1064 128 HOH HOH . E 5 HOH A 65 1065 104 HOH HOH . E 5 HOH A 66 1066 266 HOH HOH . E 5 HOH A 67 1067 106 HOH HOH . E 5 HOH A 68 1068 105 HOH HOH . E 5 HOH A 69 1069 300 HOH HOH . E 5 HOH A 70 1070 116 HOH HOH . E 5 HOH A 71 1071 119 HOH HOH . E 5 HOH A 72 1072 150 HOH HOH . E 5 HOH A 73 1073 176 HOH HOH . E 5 HOH A 74 1074 177 HOH HOH . E 5 HOH A 75 1075 41 HOH HOH . E 5 HOH A 76 1076 111 HOH HOH . E 5 HOH A 77 1077 243 HOH HOH . E 5 HOH A 78 1078 264 HOH HOH . E 5 HOH A 79 1079 108 HOH HOH . E 5 HOH A 80 1080 238 HOH HOH . E 5 HOH A 81 1081 73 HOH HOH . E 5 HOH A 82 1082 43 HOH HOH . E 5 HOH A 83 1083 19 HOH HOH . E 5 HOH A 84 1084 185 HOH HOH . E 5 HOH A 85 1085 182 HOH HOH . E 5 HOH A 86 1086 15 HOH HOH . E 5 HOH A 87 1087 158 HOH HOH . E 5 HOH A 88 1088 56 HOH HOH . E 5 HOH A 89 1089 138 HOH HOH . E 5 HOH A 90 1090 221 HOH HOH . E 5 HOH A 91 1091 132 HOH HOH . E 5 HOH A 92 1092 188 HOH HOH . E 5 HOH A 93 1093 297 HOH HOH . E 5 HOH A 94 1094 294 HOH HOH . E 5 HOH A 95 1095 26 HOH HOH . E 5 HOH A 96 1096 72 HOH HOH . E 5 HOH A 97 1097 253 HOH HOH . E 5 HOH A 98 1098 134 HOH HOH . E 5 HOH A 99 1099 237 HOH HOH . E 5 HOH A 100 1100 130 HOH HOH . E 5 HOH A 101 1101 143 HOH HOH . E 5 HOH A 102 1102 233 HOH HOH . E 5 HOH A 103 1103 196 HOH HOH . E 5 HOH A 104 1104 121 HOH HOH . E 5 HOH A 105 1105 263 HOH HOH . E 5 HOH A 106 1106 170 HOH HOH . E 5 HOH A 107 1107 32 HOH HOH . E 5 HOH A 108 1108 304 HOH HOH . E 5 HOH A 109 1109 120 HOH HOH . E 5 HOH A 110 1110 4 HOH HOH . E 5 HOH A 111 1111 180 HOH HOH . E 5 HOH A 112 1112 184 HOH HOH . E 5 HOH A 113 1113 262 HOH HOH . E 5 HOH A 114 1114 280 HOH HOH . E 5 HOH A 115 1115 33 HOH HOH . E 5 HOH A 116 1116 204 HOH HOH . E 5 HOH A 117 1117 16 HOH HOH . E 5 HOH A 118 1118 60 HOH HOH . E 5 HOH A 119 1119 147 HOH HOH . E 5 HOH A 120 1120 290 HOH HOH . E 5 HOH A 121 1121 169 HOH HOH . E 5 HOH A 122 1122 83 HOH HOH . E 5 HOH A 123 1123 97 HOH HOH . E 5 HOH A 124 1124 12 HOH HOH . E 5 HOH A 125 1125 194 HOH HOH . E 5 HOH A 126 1126 139 HOH HOH . E 5 HOH A 127 1127 31 HOH HOH . E 5 HOH A 128 1128 34 HOH HOH . E 5 HOH A 129 1129 69 HOH HOH . E 5 HOH A 130 1130 9 HOH HOH . E 5 HOH A 131 1131 50 HOH HOH . E 5 HOH A 132 1132 277 HOH HOH . E 5 HOH A 133 1133 198 HOH HOH . E 5 HOH A 134 1134 275 HOH HOH . E 5 HOH A 135 1135 306 HOH HOH . E 5 HOH A 136 1136 95 HOH HOH . E 5 HOH A 137 1137 45 HOH HOH . E 5 HOH A 138 1138 217 HOH HOH . E 5 HOH A 139 1139 235 HOH HOH . E 5 HOH A 140 1140 129 HOH HOH . E 5 HOH A 141 1141 146 HOH HOH . E 5 HOH A 142 1142 28 HOH HOH . E 5 HOH A 143 1143 52 HOH HOH . E 5 HOH A 144 1144 122 HOH HOH . E 5 HOH A 145 1145 77 HOH HOH . E 5 HOH A 146 1146 173 HOH HOH . E 5 HOH A 147 1147 164 HOH HOH . E 5 HOH A 148 1148 288 HOH HOH . E 5 HOH A 149 1149 80 HOH HOH . E 5 HOH A 150 1150 226 HOH HOH . E 5 HOH A 151 1151 86 HOH HOH . E 5 HOH A 152 1152 231 HOH HOH . E 5 HOH A 153 1153 268 HOH HOH . E 5 HOH A 154 1154 103 HOH HOH . E 5 HOH A 155 1155 88 HOH HOH . E 5 HOH A 156 1156 236 HOH HOH . E 5 HOH A 157 1157 65 HOH HOH . E 5 HOH A 158 1158 232 HOH HOH . E 5 HOH A 159 1159 281 HOH HOH . E 5 HOH A 160 1160 35 HOH HOH . E 5 HOH A 161 1161 161 HOH HOH . E 5 HOH A 162 1162 82 HOH HOH . E 5 HOH A 163 1163 27 HOH HOH . E 5 HOH A 164 1164 44 HOH HOH . E 5 HOH A 165 1165 114 HOH HOH . E 5 HOH A 166 1166 38 HOH HOH . E 5 HOH A 167 1167 228 HOH HOH . E 5 HOH A 168 1168 75 HOH HOH . E 5 HOH A 169 1169 99 HOH HOH . E 5 HOH A 170 1170 68 HOH HOH . E 5 HOH A 171 1171 53 HOH HOH . E 5 HOH A 172 1172 149 HOH HOH . E 5 HOH A 173 1173 192 HOH HOH . E 5 HOH A 174 1174 269 HOH HOH . E 5 HOH A 175 1175 144 HOH HOH . E 5 HOH A 176 1176 199 HOH HOH . E 5 HOH A 177 1177 137 HOH HOH . E 5 HOH A 178 1178 13 HOH HOH . E 5 HOH A 179 1179 96 HOH HOH . E 5 HOH A 180 1180 2 HOH HOH . E 5 HOH A 181 1181 141 HOH HOH . E 5 HOH A 182 1182 283 HOH HOH . E 5 HOH A 183 1183 109 HOH HOH . E 5 HOH A 184 1184 98 HOH HOH . E 5 HOH A 185 1185 131 HOH HOH . E 5 HOH A 186 1186 159 HOH HOH . E 5 HOH A 187 1187 7 HOH HOH . E 5 HOH A 188 1188 25 HOH HOH . E 5 HOH A 189 1189 30 HOH HOH . E 5 HOH A 190 1190 61 HOH HOH . E 5 HOH A 191 1191 278 HOH HOH . E 5 HOH A 192 1192 292 HOH HOH . E 5 HOH A 193 1193 227 HOH HOH . E 5 HOH A 194 1194 112 HOH HOH . E 5 HOH A 195 1195 216 HOH HOH . E 5 HOH A 196 1196 254 HOH HOH . E 5 HOH A 197 1197 124 HOH HOH . E 5 HOH A 198 1198 84 HOH HOH . E 5 HOH A 199 1199 51 HOH HOH . E 5 HOH A 200 1200 93 HOH HOH . E 5 HOH A 201 1201 245 HOH HOH . E 5 HOH A 202 1202 58 HOH HOH . E 5 HOH A 203 1203 230 HOH HOH . E 5 HOH A 204 1204 74 HOH HOH . E 5 HOH A 205 1205 101 HOH HOH . E 5 HOH A 206 1206 6 HOH HOH . E 5 HOH A 207 1207 64 HOH HOH . E 5 HOH A 208 1208 102 HOH HOH . E 5 HOH A 209 1209 167 HOH HOH . E 5 HOH A 210 1210 91 HOH HOH . E 5 HOH A 211 1211 37 HOH HOH . E 5 HOH A 212 1212 241 HOH HOH . E 5 HOH A 213 1213 47 HOH HOH . E 5 HOH A 214 1214 223 HOH HOH . E 5 HOH A 215 1215 265 HOH HOH . E 5 HOH A 216 1216 211 HOH HOH . E 5 HOH A 217 1217 126 HOH HOH . E 5 HOH A 218 1218 258 HOH HOH . E 5 HOH A 219 1219 193 HOH HOH . E 5 HOH A 220 1220 252 HOH HOH . E 5 HOH A 221 1221 54 HOH HOH . E 5 HOH A 222 1222 183 HOH HOH . E 5 HOH A 223 1223 189 HOH HOH . E 5 HOH A 224 1224 100 HOH HOH . E 5 HOH A 225 1225 153 HOH HOH . E 5 HOH A 226 1226 151 HOH HOH . E 5 HOH A 227 1227 23 HOH HOH . E 5 HOH A 228 1228 285 HOH HOH . E 5 HOH A 229 1229 171 HOH HOH . E 5 HOH A 230 1230 39 HOH HOH . E 5 HOH A 231 1231 40 HOH HOH . E 5 HOH A 232 1232 18 HOH HOH . E 5 HOH A 233 1233 201 HOH HOH . E 5 HOH A 234 1234 117 HOH HOH . E 5 HOH A 235 1235 113 HOH HOH . E 5 HOH A 236 1236 107 HOH HOH . E 5 HOH A 237 1237 174 HOH HOH . E 5 HOH A 238 1238 154 HOH HOH . E 5 HOH A 239 1239 63 HOH HOH . E 5 HOH A 240 1240 202 HOH HOH . E 5 HOH A 241 1241 62 HOH HOH . E 5 HOH A 242 1242 48 HOH HOH . E 5 HOH A 243 1243 155 HOH HOH . E 5 HOH A 244 1244 181 HOH HOH . E 5 HOH A 245 1245 157 HOH HOH . E 5 HOH A 246 1246 1 HOH HOH . E 5 HOH A 247 1247 305 HOH HOH . E 5 HOH A 248 1248 10 HOH HOH . E 5 HOH A 249 1249 291 HOH HOH . E 5 HOH A 250 1250 135 HOH HOH . E 5 HOH A 251 1251 220 HOH HOH . E 5 HOH A 252 1252 22 HOH HOH . E 5 HOH A 253 1253 293 HOH HOH . E 5 HOH A 254 1254 303 HOH HOH . E 5 HOH A 255 1255 234 HOH HOH . E 5 HOH A 256 1256 203 HOH HOH . E 5 HOH A 257 1257 271 HOH HOH . E 5 HOH A 258 1258 270 HOH HOH . E 5 HOH A 259 1259 287 HOH HOH . E 5 HOH A 260 1260 110 HOH HOH . E 5 HOH A 261 1261 36 HOH HOH . E 5 HOH A 262 1262 168 HOH HOH . E 5 HOH A 263 1263 224 HOH HOH . E 5 HOH A 264 1264 79 HOH HOH . E 5 HOH A 265 1265 240 HOH HOH . E 5 HOH A 266 1266 242 HOH HOH . E 5 HOH A 267 1267 301 HOH HOH . E 5 HOH A 268 1268 299 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 0.123 19.009 35.317 1 102.57 ? S DMS 902 A 1 HETATM 2 O O DMS . . . C 3 0.235 17.95 34.285 1 97.15 ? O DMS 902 A 1 HETATM 3 C C1 DMS . . . C 3 -0.751 20.341 34.693 1 96.93 ? C1 DMS 902 A 1 HETATM 4 C C2 DMS . . . C 3 -0.926 18.481 36.556 1 102.89 ? C2 DMS 902 A 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #