data_5OXK
#
_model_server_result.job_id            SjGRRtxBjwTyve37rS9OEg 
_model_server_result.datetime_utc      '2024-11-08 04:02:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oxk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":507}' 
#
_entry.id    5OXK 
#
_exptl.entry_id    5OXK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OXK 
_cell.length_a            100.7 
_cell.length_b            110.2 
_cell.length_c            105.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OXK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 38 n n 
C20 C18 78M sing 39 n n 
C18 O19 78M sing 40 n n 
C18 C17 78M sing 41 n n 
C17 O2 78M sing 42 n n 
O2 C1 78M sing 43 n n 
C1 O1 78M doub 44 n n 
C1 C2 78M sing 45 n n 
C2 C3 78M sing 46 n n 
C3 C4 78M sing 47 n n 
C4 C5 78M sing 48 n n 
C5 C6 78M sing 49 n n 
C6 C7 78M sing 50 n n 
C7 C8 78M doub 51 z n 
C8 C9 78M sing 52 n n 
C9 C10 78M sing 53 n n 
C10 C11 78M sing 54 n n 
C11 C12 78M sing 55 n n 
C12 C13 78M sing 56 n n 
C15 C14 78M sing 57 n n 
C13 C14 78M sing 58 n n 
O21 H21 78M sing 59 n n 
C20 H201 78M sing 60 n n 
C20 H202 78M sing 61 n n 
C18 H18 78M sing 62 n n 
O19 H19 78M sing 63 n n 
C17 H171 78M sing 64 n n 
C17 H172 78M sing 65 n n 
C2 H21C 78M sing 66 n n 
C2 H22C 78M sing 67 n n 
C3 H31C 78M sing 68 n n 
C3 H32C 78M sing 69 n n 
C4 H41C 78M sing 70 n n 
C4 H42C 78M sing 71 n n 
C5 H51C 78M sing 72 n n 
C5 H52C 78M sing 73 n n 
C6 H61C 78M sing 74 n n 
C6 H62C 78M sing 75 n n 
C7 H7 78M sing 76 n n 
C8 H8 78M sing 77 n n 
C9 H91C 78M sing 78 n n 
C9 H92C 78M sing 79 n n 
C10 H101 78M sing 80 n n 
C10 H102 78M sing 81 n n 
C11 H111 78M sing 82 n n 
C11 H112 78M sing 83 n n 
C12 H121 78M sing 84 n n 
C12 H122 78M sing 85 n n 
C13 H131 78M sing 86 n n 
C13 H132 78M sing 87 n n 
C15 H151 78M sing 88 n n 
C15 H152 78M sing 89 n n 
C15 H153 78M sing 90 n n 
C14 H141 78M sing 91 n n 
C14 H142 78M sing 92 n n 
#
_atom_sites.entry_id                     5OXK 
_atom_sites.fract_transf_matrix[1][1]    0.00993 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009074 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009506 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 501 1 PO4 PO4 . 
C 2 PO4 A 1 502 2 PO4 PO4 . 
D 2 PO4 A 1 503 3 PO4 PO4 . 
E 3 1PE A 1 504 4 1PE 1PE . 
F 4 78N A 1 505 1 78N 78N . 
G 4 78N A 1 506 2 78N 78N . 
H 5 78M A 1 507 3 78M 78M . 
I 4 78N A 1 508 4 78N 78N . 
J 4 78N A 1 509 5 78N 78N . 
K 4 78N A 1 510 6 78N 78N . 
L 4 78N A 1 511 7 78N 78N . 
M 4 78N A 1 512 8 78N 78N . 
N 4 78N A 1 513 9 78N 78N . 
O 4 78N A 1 514 10 78N 78N . 
P 4 78N A 1 515 11 78N 78N . 
Q 4 78N A 1 516 12 78N 78N . 
R 4 78N A 1 517 13 78N 78N . 
S 6 ALA A 1 518 1 ALA ALA . 
T 7 GLN A 1 519 2 GLN GLN . 
U 8 HOH A 1 601 47 HOH HOH . 
U 8 HOH A 2 602 20 HOH HOH . 
U 8 HOH A 3 603 39 HOH HOH . 
U 8 HOH A 4 604 32 HOH HOH . 
U 8 HOH A 5 605 28 HOH HOH . 
U 8 HOH A 6 606 29 HOH HOH . 
U 8 HOH A 7 607 23 HOH HOH . 
U 8 HOH A 8 608 33 HOH HOH . 
U 8 HOH A 9 609 5 HOH HOH . 
U 8 HOH A 10 610 10 HOH HOH . 
U 8 HOH A 11 611 15 HOH HOH . 
U 8 HOH A 12 612 6 HOH HOH . 
U 8 HOH A 13 613 4 HOH HOH . 
U 8 HOH A 14 614 8 HOH HOH . 
U 8 HOH A 15 615 21 HOH HOH . 
U 8 HOH A 16 616 17 HOH HOH . 
U 8 HOH A 17 617 11 HOH HOH . 
U 8 HOH A 18 618 22 HOH HOH . 
U 8 HOH A 19 619 18 HOH HOH . 
U 8 HOH A 20 620 45 HOH HOH . 
U 8 HOH A 21 621 12 HOH HOH . 
U 8 HOH A 22 622 36 HOH HOH . 
U 8 HOH A 23 623 7 HOH HOH . 
U 8 HOH A 24 624 9 HOH HOH . 
U 8 HOH A 25 625 42 HOH HOH . 
U 8 HOH A 26 626 13 HOH HOH . 
U 8 HOH A 27 627 14 HOH HOH . 
U 8 HOH A 28 628 26 HOH HOH . 
U 8 HOH A 29 629 1 HOH HOH . 
U 8 HOH A 30 630 41 HOH HOH . 
U 8 HOH A 31 631 27 HOH HOH . 
U 8 HOH A 32 632 34 HOH HOH . 
U 8 HOH A 33 633 3 HOH HOH . 
U 8 HOH A 34 634 24 HOH HOH . 
U 8 HOH A 35 635 25 HOH HOH . 
U 8 HOH A 36 636 19 HOH HOH . 
U 8 HOH A 37 637 16 HOH HOH . 
U 8 HOH A 38 638 2 HOH HOH . 
U 8 HOH A 39 639 35 HOH HOH . 
U 8 HOH A 40 640 31 HOH HOH . 
U 8 HOH A 41 641 37 HOH HOH . 
U 8 HOH A 42 642 30 HOH HOH . 
U 8 HOH A 43 643 43 HOH HOH . 
U 8 HOH A 44 644 44 HOH HOH . 
U 8 HOH A 45 645 46 HOH HOH . 
U 8 HOH A 46 646 38 HOH HOH . 
U 8 HOH A 47 647 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . H 5 6.325 8.957 16.92 1 93.25 ? O21 78M 507 A 1 
HETATM 2 C C20 78M . . . H 5 6.24 9.921 15.841 1 89.66 ? C20 78M 507 A 1 
HETATM 3 C C18 78M . . . H 5 5.955 11.312 16.41 1 89.4 ? C18 78M 507 A 1 
HETATM 4 O O19 78M . . . H 5 4.598 11.442 16.62 1 92.72 ? O19 78M 507 A 1 
HETATM 5 C C17 78M . . . H 5 6.426 12.381 15.441 1 86.95 ? C17 78M 507 A 1 
HETATM 6 O O2 78M . . . H 5 5.998 12.1 14.123 1 82.95 ? O2 78M 507 A 1 
HETATM 7 C C1 78M . . . H 5 5.786 13.268 13.332 1 79.52 ? C1 78M 507 A 1 
HETATM 8 O O1 78M . . . H 5 5.103 14.19 13.776 1 86.18 ? O1 78M 507 A 1 
HETATM 9 C C2 78M . . . H 5 6.397 13.401 11.919 1 71.63 ? C2 78M 507 A 1 
HETATM 10 C C3 78M . . . H 5 5.666 14.5 11.166 1 69.04 ? C3 78M 507 A 1 
HETATM 11 C C4 78M . . . H 5 6.403 14.819 9.821 1 80.36 ? C4 78M 507 A 1 
HETATM 12 C C5 78M . . . H 5 5.668 14.134 8.666 1 81.09 ? C5 78M 507 A 1 
HETATM 13 C C6 78M . . . H 5 5.068 15.194 7.738 1 81.37 ? C6 78M 507 A 1 
HETATM 14 C C7 78M . . . H 5 5.962 15.318 6.466 1 77.77 ? C7 78M 507 A 1 
HETATM 15 C C8 78M . . . H 5 5.394 15.233 5.206 1 78.39 ? C8 78M 507 A 1 
HETATM 16 C C9 78M . . . H 5 6.243 15.349 3.98 1 78.31 ? C9 78M 507 A 1 
HETATM 17 C C10 78M . . . H 5 5.778 14.286 2.942 1 73.74 ? C10 78M 507 A 1 
HETATM 18 C C11 78M . . . H 5 6.167 14.741 1.485 1 72.26 ? C11 78M 507 A 1 
HETATM 19 C C12 78M . . . H 5 6.574 13.521 0.63 1 73.47 ? C12 78M 507 A 1 
HETATM 20 C C13 78M . . . H 5 5.463 12.404 0.69 1 94.63 ? C13 78M 507 A 1 
HETATM 21 C C15 78M . . . H 5 5.055 10.589 2.372 1 94.98 ? C15 78M 507 A 1 
HETATM 22 C C14 78M . . . H 5 6.046 11.129 1.332 1 94.52 ? C14 78M 507 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#